CmoCh19G002350 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002350
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr19: 1647049 .. 1648372 (+)
RNA-Seq Expression	CmoCh19G002350
Synteny	CmoCh19G002350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGGCAATCTCTAGGCTCCCCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCCGATCAACTTCCGACCGGCGATCAAAAGCGCAAGAAGCACTCTCCATCTTCTTCCTCAATTGTCATCTACGACGGACAGGACGACGAGAAAGTCTCTAAATCTTTCCGATTCTCATTTCCATCGCCTTCTCCTCCGCGGCAGGAGAACCTCGTTCACGCCATCCCTATCCTTACCGTTATCTGCTTCCTCATCCTTTACATCTGCTCGCACACTCCTTCGCAGTCAGGTACCTTCAATCGCTCCTTATTTCGCTTTAGTTTCAATCTAATCGATCGTCTAGGTTAATATTCTGTTTCGATTTTTTCAGATTTGGCTCAGTTTCATGGATTCAAACGTCCTTCTGAACAATTAGGTATAATGTTGTAGAGGATTTTGCTAATTGAGGCATTCTCTGTGTAATTTCTGTAATTGAACCTTTGGATTTGGTGTTTTACTAGCAGAAATCAAAGCCGATGGAGACGAACTTATTGTGCCGAAGCAAGGCAACATAATGGCGATTCAGAGTTTCCGTAACCTAAAAGAGATCGAAAAATCATCCTCTCTTAAATCTCGCTCTCCGAGGAAACTCGCGGATTTCTAAACTCCGCATTTCCGATCATCTGAACTTACGGTAAAATCTCACTGACCTCGTTTTCGCCGTACGGCTTCACTCGCCGCCGCGTGTGCTTCTGTACATCAAATACTCCGCCGGATCAAATCGTTTTTATTCCATTTCCTTTTAGTTTTCCAAGTTTTTTTGTTCGCCTCTGCGCTGGCGGCGCTTCTGTAACTTCCGATTAGATACTATAATCTTACTCTAAACAAAGAATGAGTAAATAAATAGTTGATCAGAAAACAGAACCAGTTACCGAAGCACCGATAGTTCACGTGAACTTCCGACGCCGGCGCGGCGGATACGAAAGTGGAATCCAGCTGGAGTATATTTCCTGCTATTTTCGATTTTCCGAATCGGACCGTTACAGAATTGGGAGAAGGGCCAATACGCCAGTTGGAAAATACTGCCGTAGCTGCAGGAGTCAGGTTCTTTCTTGCTATCAAATTTACTTTTAGGCCCTCTATCTATTGCCTATTTATTTTTAGGCCCTCTATCTATTGCCTATTTATCTTTAGACCCTCCGTCTATTGCCTATTTATCTTTAGGCCCTCTGACTATTGCTTATTTATTTTTGTGCCATCTGCTGTGCCGTTTAATTTAATCTCATACCTCACCAATTTTTCTTGATTGCTACCCTTTCAAAAATTGAAATTTTCGAAATTT

mRNA sequence

ATGCAAAGGCAATCTCTAGGCTCCCCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCCGATCAACTTCCGACCGGCGATCAAAAGCGCAAGAAGCACTCTCCATCTTCTTCCTCAATTGTCATCTACGACGGACAGGACGACGAGAAAGTCTCTAAATCTTTCCGATTCTCATTTCCATCGCCTTCTCCTCCGCGGCAGGAGAACCTCGTTCACGCCATCCCTATCCTTACCGTTATCTGCTTCCTCATCCTTTACATCTGCTCGCACACTCCTTCGCAGTCAGGTACCTTCAATCGCTCCTTATTTCGCTTTAGTTTCAATCTAATCGATCGTCTAGATTTGGCTCAGTTTCATGGATTCAAACGTCCTTCTGAACAATTAGAAATCAAAGCCGATGGAGACGAACTTATTGTGCCGAAGCAAGGCAACATAATGGCGATTCAGAGTTTCCGTAACCTAAAAGAGATCGAAAAATCATCCTCTCTTAAATCTCGCTCTCCGAGGAAACTCGCGGATTTCTAAACTCCGCATTTCCGATCATCTGAACTTACGGTAAAATCTCACTGACCTCGTTTTCGCCGTACGGCTTCACTCGCCGCCGCGTGTGCTTCTGTACATCAAATACTCCGCCGGATCAAATCGTTTTTATTCCATTTCCTTTTAGTTTTCCAAGTTTTTTTGTTCGCCTCTGCGCTGGCGGCGCTTCTGTAACTTCCGATTAGATACTATAATCTTACTCTAAACAAAGAATGAGTAAATAAATAGTTGATCAGAAAACAGAACCAGTTACCGAAGCACCGATAGTTCACGTGAACTTCCGACGCCGGCGCGGCGGATACGAAAGTGGAATCCAGCTGGAGTATATTTCCTGCTATTTTCGATTTTCCGAATCGGACCGTTACAGAATTGGGAGAAGGGCCAATACGCCAGTTGGAAAATACTGCCGTAGCTGCAGGAGTCAGGTTCTTTCTTGCTATCAAATTTACTTTTAGGCCCTCTATCTATTGCCTATTTATTTTTAGGCCCTCTATCTATTGCCTATTTATCTTTAGACCCTCCGTCTATTGCCTATTTATCTTTAGGCCCTCTGACTATTGCTTATTTATTTTTGTGCCATCTGCTGTGCCGTTTAATTTAATCTCATACCTCACCAATTTTTCTTGATTGCTACCCTTTCAAAAATTGAAATTTTCGAAATTT

Coding sequence (CDS)

ATGCAAAGGCAATCTCTAGGCTCCCCAGTTTCCAAGCTCCACGGCCATGGCGCCGGAGCCAAATCCGATCAACTTCCGACCGGCGATCAAAAGCGCAAGAAGCACTCTCCATCTTCTTCCTCAATTGTCATCTACGACGGACAGGACGACGAGAAAGTCTCTAAATCTTTCCGATTCTCATTTCCATCGCCTTCTCCTCCGCGGCAGGAGAACCTCGTTCACGCCATCCCTATCCTTACCGTTATCTGCTTCCTCATCCTTTACATCTGCTCGCACACTCCTTCGCAGTCAGGTACCTTCAATCGCTCCTTATTTCGCTTTAGTTTCAATCTAATCGATCGTCTAGATTTGGCTCAGTTTCATGGATTCAAACGTCCTTCTGAACAATTAGAAATCAAAGCCGATGGAGACGAACTTATTGTGCCGAAGCAAGGCAACATAATGGCGATTCAGAGTTTCCGTAACCTAAAAGAGATCGAAAAATCATCCTCTCTTAAATCTCGCTCTCCGAGGAAACTCGCGGATTTCTAA

Protein sequence

MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFSFPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQSGTFNRSLFRFSFNLIDRLDLAQFHGFKRPSEQLEIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF

Homology

[Close]

BLAST of CmoCh19G002350 vs. ExPASy TrEMBL
Match: A0A6J1HKI9 (uncharacterized protein LOC111463852 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463852 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.8e-78
Identity = 158/176 (89.77%), Postives = 158/176 (89.77%), Query Frame = 0


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS 60

Query: 61  FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQSGTFNRSLFRFSFNLIDRLDLAQF 120
           FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQS                  DLAQF
Sbjct: 61  FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQS------------------DLAQF 120

Query: 121 HGFKRPSEQLEIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF 177
           HGFKRPSEQLEIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF
Sbjct: 121 HGFKRPSEQLEIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF 158

[Close]

BLAST of CmoCh19G002350 vs. ExPASy TrEMBL
Match: A0A6J1HI49 (uncharacterized protein LOC111463852 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463852 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.9e-77
Identity = 158/177 (89.27%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS 60

Query: 61  FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQSGTFNRSLFRFSFNLIDRLDLAQF 120
           FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQS                  DLAQF
Sbjct: 61  FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQS------------------DLAQF 120

Query: 121 HGFKRPSEQL-EIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF 177
           HGFKRPSEQL EIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF
Sbjct: 121 HGFKRPSEQLAEIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF 159

[Close]

BLAST of CmoCh19G002350 vs. ExPASy TrEMBL
Match: A0A6J1HQJ6 (uncharacterized protein LOC111466893 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466893 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.6e-73
Identity = 149/176 (84.66%), Postives = 153/176 (86.93%), Query Frame = 0


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD LP  DQKRKKHSPSSSSIVIYDGQDD+KVSKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDGLPADDQKRKKHSPSSSSIVIYDGQDDDKVSKSFRFS 60

Query: 61  FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQSGTFNRSLFRFSFNLIDRLDLAQF 120
           FPSPSPPRQENLVHAIPILT+ICFLILYICSHTPSQS                  DLAQF
Sbjct: 61  FPSPSPPRQENLVHAIPILTIICFLILYICSHTPSQS------------------DLAQF 120

Query: 121 HGFKRPSEQLEIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF 177
           H FKRPSEQLEIKADGDELIVPKQGNI+AIQSFR L+EIEKSSSLKSRSPRKLADF
Sbjct: 121 HRFKRPSEQLEIKADGDELIVPKQGNILAIQSFRKLEEIEKSSSLKSRSPRKLADF 158

[Close]

BLAST of CmoCh19G002350 vs. ExPASy TrEMBL
Match: A0A6J1HRQ8 (uncharacterized protein LOC111466893 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466893 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 8.7e-72
Identity = 149/177 (84.18%), Postives = 153/177 (86.44%), Query Frame = 0


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD LP  DQKRKKHSPSSSSIVIYDGQDD+KVSKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDGLPADDQKRKKHSPSSSSIVIYDGQDDDKVSKSFRFS 60

Query: 61  FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQSGTFNRSLFRFSFNLIDRLDLAQF 120
           FPSPSPPRQENLVHAIPILT+ICFLILYICSHTPSQS                  DLAQF
Sbjct: 61  FPSPSPPRQENLVHAIPILTIICFLILYICSHTPSQS------------------DLAQF 120

Query: 121 HGFKRPSEQL-EIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF 177
           H FKRPSEQL EIKADGDELIVPKQGNI+AIQSFR L+EIEKSSSLKSRSPRKLADF
Sbjct: 121 HRFKRPSEQLAEIKADGDELIVPKQGNILAIQSFRKLEEIEKSSSLKSRSPRKLADF 159

[Close]

BLAST of CmoCh19G002350 vs. ExPASy TrEMBL
Match: A0A0A0LE94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901050 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.1e-66
Identity = 138/176 (78.41%), Postives = 147/176 (83.52%), Query Frame = 0


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVIYDGQDDEKVSKSFRFS 60
           MQRQSLGSPVSKLHGHGAGAKSD+ P  DQKRKKHSPSSSSI+ Y GQDD+K SKSFRFS
Sbjct: 1   MQRQSLGSPVSKLHGHGAGAKSDEDPADDQKRKKHSPSSSSILNYGGQDDDKSSKSFRFS 60

Query: 61  FPSPSPPRQENLVHAIPILTVICFLILYICSHTPSQSGTFNRSLFRFSFNLIDRLDLAQF 120
           FPSPSPPRQE LVHAIPILT+ICFLILYI SH+PSQS                  DLAQF
Sbjct: 61  FPSPSPPRQEKLVHAIPILTIICFLILYIFSHSPSQS------------------DLAQF 120

Query: 121 HGFKRPSEQLEIKADGDELIVPKQGNIMAIQSFRNLKEIEKSSSLKSRSPRKLADF 177
           HGFK PS+QLEIKADGDELI+PK+GNI+AIQSFRNLKEIEKS SLKSR PRKLADF
Sbjct: 121 HGFKHPSQQLEIKADGDELILPKKGNILAIQSFRNLKEIEKSYSLKSRPPRKLADF 158

[Close]

BLAST of CmoCh19G002350 vs. TAIR 10
Match: AT2G35470.1 (unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-20
Identity = 78/186 (41.94%), Postives = 99/186 (53.23%), Query Frame = 0


Query: 1   MQRQSLGSPVSKLHGHGAGAKSDQLPTGDQKRKKHSPSSSSIVI-YDGQDDEKVSKSFRF 60
           MQR SL S  SKLH +G G K D     D K    SPSSSS  + YD  + +        
Sbjct: 1   MQRISLDSSASKLHSYG-GRKDDTYDIDDLKPASSSPSSSSSAVDYDDHELKDFKPRRLS 60

Query: 61  SFPSP---SPPRQENLVHAIPILTVICFLILYICSHTPSQSGTFNRSLFRFSFNLIDRLD 120
           S  SP   +  +QE LVH IPILT+ICF+ILY+ S+ PSQS                  D
Sbjct: 61  SLQSPFVTTNQKQEKLVHFIPILTLICFIILYLTSYAPSQS------------------D 120

Query: 121 LAQFHGFKRPSEQLEIK-ADGDELIVPKQGNIMAIQ-SFRNLKEIE----KSSSLKSRSP 177
           LAQF+GF RPS+ LE    +GDE+    + + ++I+ S RNL+E E    KS   +  S 
Sbjct: 121 LAQFNGFMRPSKHLESSDENGDEISGFIRADTLSIRSSVRNLQETESFTTKSLPRRRTSH 167

The following BLAST results are available for this feature:

BLAST of CmoCh19G002350 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HKI9	2.8e-78	89.77	uncharacterized protein LOC111463852 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HI49	6.9e-77	89.27	uncharacterized protein LOC111463852 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HQJ6	3.6e-73	84.66	uncharacterized protein LOC111466893 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HRQ8	8.7e-72	84.18	uncharacterized protein LOC111466893 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LE94	1.1e-66	78.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G901050 PE=4 SV=1	[more]

BLAST of CmoCh19G002350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35470.1	2.0e-20	41.94	unknown protein; Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR35297:SF2	PROTEIN, PUTATIVE-RELATED	coord: 1..176
None	No IPR available	PANTHER	PTHR35297	PROTEIN, PUTATIVE-RELATED	coord: 1..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002350.1	CmoCh19G002350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane