CmoCh19G002180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NAC domain-containing protein
Location	Cmo_Chr19: 1455009 .. 1455664 (-)
RNA-Seq Expression	CmoCh19G002180
Synteny	CmoCh19G002180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCTCATGATAGCCCTCTCTTGCCTGTCGGAGTGAGATTCAGACCTACTGATCAACAGCTTCTTCAATATTTACATTGGAAGATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGAAATGGAACCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGCGCATATCAACCGTAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCGGCCGATCCAATTTTTGCTGCCAAAACCGATAAAACAATAATCGGCTATCGCAAACGCTTTAGGTTCGTTCTGTCATTTTGATTTCAATTTTTGTTAGAATCTTTAACCCTATGTCTATGTCCTTGGAACATTTAAGTCATTGAATACATTTTAGGTACGAGAATGCCCAATCGCCGGAGCATCATGGGAAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAATGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGGGCCGGAACTTAGTAAGAGAAGAATGACCACCTGA

mRNA sequence

ATGGATTCTCATGATAGCCCTCTCTTGCCTGTCGGAGTGAGATTCAGACCTACTGATCAACAGCTTCTTCAATATTTACATTGGAAGATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGAAATGGAACCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGCGCATATCAACCGTAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCGGCCGATCCAATTTTTGCTGCCAAAACCGATAAAACAATAATCGGCTATCGCAAACGCTTTAGGTACGAGAATGCCCAATCGCCGGAGCATCATGGGAAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAATGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGGGCCGGAACTTAGTAAGAGAAGAATGACCACCTGA

Coding sequence (CDS)

ATGGATTCTCATGATAGCCCTCTCTTGCCTGTCGGAGTGAGATTCAGACCTACTGATCAACAGCTTCTTCAATATTTACATTGGAAGATTCATGGCCAACCATATTTCAAACGTGCAGTCTTGGACTGTGATCTTTATGGAGAAATGGAACCATGGGAAATCTGGCTACGTTTTGGAGGCACCGACGGCGAAGATCTCTATTTCTTCACCAAACTCAAGAGGTCCACCAATAACTCTGGACGTTTGTCAGCGCATATCAACCGTAAGGTCGGCTTGGCCAACGGTACATGGAGTGGCGAGAACTCGGCCGATCCAATTTTTGCTGCCAAAACCGATAAAACAATAATCGGCTATCGCAAACGCTTTAGGTACGAGAATGCCCAATCGCCGGAGCATCATGGGAAATGGATTATGCATGAATATAGCTTGCATCAAGATTCGATACAACAAGCTGTAGATTCAGATTATGTTTTATGCCGATTCAAAAAGAATGAAAGACTTAAAAGAAAATTACAAAAAAATCTCGAGGGGCCGGAACTTAGTAAGAGAAGAATGACCACCTGA

Protein sequence

MDSHDSPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYENAQSPEHHGKWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPELSKRRMTT

Homology

[Close]

BLAST of CmoCh19G002180 vs. ExPASy Swiss-Prot
Match: Q9C8W9 (NAC domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=NAC030 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.7e-11
Identity = 52/168 (30.95%), Postives = 77/168 (45.83%), Query Frame = 0


Query: 1   MDSHDSPLLPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLR-- 60
           MD+     +P G RF PT+++L+  YL  KI+        +++ DLY +MEPW+I  R  
Sbjct: 1   MDNIMQSSMPPGFRFHPTEEELVGYYLDRKINSMKSALDVIVEIDLY-KMEPWDIQARCK 60

Query: 61  FGGTDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIG 120
            G  +  + YFF+   R      R     NR    A G W          A  +  ++IG
Sbjct: 61  LGYEEQNEWYFFSHKDRKYPTGTR----TNR--ATAAGFWKATGRDK---AVLSKNSVIG 120

Query: 121 YRKRFRYENAQSPE-HHGKWIMHEYSLHQDSIQQAVDSDYVLCR-FKK 164
            RK   Y   ++P      WIMHEY L    +    +  +V+CR F+K
Sbjct: 121 MRKTLVYYKGRAPNGRKSDWIMHEYRLQNSELAPVQEEGWVVCRAFRK 158

[Close]

BLAST of CmoCh19G002180 vs. ExPASy Swiss-Prot
Match: F4JN35 (Protein NTM1-like 9 OS=Arabidopsis thaliana OX=3702 GN=NTL9 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYEN 128
           +FF    R   N  R     NR     +G W        I   K+ KT+IG +K   +  
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKKTLVFYR 128

Query: 129 AQSPE-HHGKWIMHEY--SLHQDSIQQAVDSDYVLCR 161
            ++P+     WIMHEY  +L          S YVLCR
Sbjct: 129 GRAPKGERTNWIMHEYRPTLKDLDGTSPGQSPYVLCR 155

[Close]

BLAST of CmoCh19G002180 vs. ExPASy Swiss-Prot
Match: Q9SCK6 (NAC domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=NAC062 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-09
Identity = 49/165 (29.70%), Postives = 81/165 (49.09%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGEMEPWEI--WLRFGGTDGED 68
           LPVG+RFRPTD++L++ YL  KI+G     +A+ + D+  + EPW++  +      D E 
Sbjct: 13  LPVGLRFRPTDEELIRYYLRRKINGHDDDVKAIREIDIC-KWEPWDLPDFSVIKTKDSEW 72

Query: 69  LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYE 128
           LYF    ++  + S +  A +        G W        I + KT+  IIG ++   + 
Sbjct: 73  LYFCPLDRKYPSGSRQNRATV-------AGYWKATGKDRKIKSGKTN--IIGVKRTLVFH 132

Query: 129 NAQSPE-HHGKWIMHEYSLHQDSIQ--QAVDSDYVLCRFKKNERL 168
             ++P      WI+HEY   +D +       S +V+C+  K E L
Sbjct: 133 AGRAPRGTRTNWIIHEYRATEDDLSGTNPGQSPFVICKLFKKEEL 167

[Close]

BLAST of CmoCh19G002180 vs. ExPASy Swiss-Prot
Match: Q8GY42 (NAC transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=NAC025 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 57/187 (30.48%), Postives = 83/187 (44.39%), Query Frame = 0


Query: 7   PLLPVGVRFRPTDQQL-LQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGTDGE- 66
           P LP G RF PTD++L + YL  K    P     + + DLY + +PWE  L    + GE 
Sbjct: 14  PHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLY-KFDPWE--LPSKASFGEH 73

Query: 67  DLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRY 126
           + YFF+   R   N  R     NR     +G W    +  PIF   + K  +G +K   +
Sbjct: 74  EWYFFSPRDRKYPNGVR----PNR--AATSGYWKATGTDKPIFTCNSHK--VGVKKALVF 133

Query: 127 ENAQSPEH-HGKWIMHEYSLHQDSIQQAVD--------------SDYVLCR-FKKNERLK 176
              + P+     WIMHEY L   ++  A                 D+VLCR +KKN   +
Sbjct: 134 YGGKPPKGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQR 189

[Close]

BLAST of CmoCh19G002180 vs. ExPASy Swiss-Prot
Match: Q52QH4 (NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC068 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-09
Identity = 58/178 (32.58%), Postives = 85/178 (47.75%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQL-LQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLR--FGGTDGED 68
           LP G RF PTD++L + YL  K+  QP     + + DLY +++PW++  +  FG    ++
Sbjct: 21  LPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLY-KLDPWDLPEKALFG---RKE 80

Query: 69  LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYE 128
            YFFT   R   N  R     NR  G   G W    +  P+ A K     +G +K   + 
Sbjct: 81  WYFFTPRDRKYPNGSR----PNRAAG--RGYWKATGADKPV-APKGSARTVGIKKALVFY 140

Query: 129 NAQSPEH-HGKWIMHEYSLHQ-------DSIQQAVDSDYVLCRF--KKNERLKRKLQK 174
           + ++P      WIMHEY L             Q +D ++VLCR   KKN   K KL++
Sbjct: 141 SGKAPRGVKTDWIMHEYRLADADRAPGGKKGSQKLD-EWVLCRLYNKKNNWEKVKLEQ 186

[Close]

BLAST of CmoCh19G002180 vs. ExPASy TrEMBL
Match: A0A6J1HH13 (NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463973 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 5.4e-96
Identity = 171/186 (91.94%), Postives = 176/186 (94.62%), Query Frame = 0


Query: 1   MDSHDSPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHD PLLPVGVRFRPTDQQLLQYL WKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFRPTDQQLLQYLIWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRK 120
           TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSA  IFA KTDKTIIGY K
Sbjct: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCK 120

Query: 121 RFRYENAQSPEHHGKWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPEL 180
           RFRYENAQ PEHHG+WIMHEYSLHQDSIQQAVDS+YVLCRFKKNER KRKLQK+LE  +L
Sbjct: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQAVDSNYVLCRFKKNERFKRKLQKDLEEQQL 180

Query: 181 SKRRMT 187
           SK+RMT
Sbjct: 181 SKKRMT 186

[Close]

BLAST of CmoCh19G002180 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 3.9e-94
Identity = 168/187 (89.84%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 1   MDSHDSPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHD PLLPVGVRF+PTD QLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRK 120
            DGE LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSA PIFA KTD TIIGY K
Sbjct: 61  IDGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCK 120

Query: 121 RFRYENAQSPEHHGKWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPEL 180
           RFRYEN Q PE HG+WIMHEYSLHQDSIQQAVD DYVLCRFKKNERLKRKLQK+LE  + 
Sbjct: 121 RFRYENVQLPERHGEWIMHEYSLHQDSIQQAVDLDYVLCRFKKNERLKRKLQKDLEEQQH 180

Query: 181 SKRRMTT 188
           SKRRMTT
Sbjct: 181 SKRRMTT 187

[Close]

BLAST of CmoCh19G002180 vs. ExPASy TrEMBL
Match: A0A6J1HXC3 (NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.1e-79
Identity = 148/186 (79.57%), Postives = 158/186 (84.95%), Query Frame = 0


Query: 1   MDSHDSPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDS +  LLPVGVRFRPTD QLL+YL++KIHG PYFK AVLD DLYGEMEPWEIWLRFGG
Sbjct: 1   MDSRNHSLLPVGVRFRPTDPQLLRYLNFKIHGLPYFKGAVLDGDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRK 120
             GE LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENS  PIFA KTDK IIGY K
Sbjct: 61  IAGEHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSGSPIFATKTDKQIIGYCK 120

Query: 121 RFRYENAQSPEHHGKWIMHEYSLHQDSIQQAVDSDYVLCRFKKNERLKRKLQKNLEGPEL 180
            FRYEN Q P+HHG+W MHEYSLHQDSI Q VDSDYVLCR  K+ RLKRKL KNLE  + 
Sbjct: 121 CFRYENIQLPQHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKHGRLKRKLPKNLELQQH 180

Query: 181 SKRRMT 187
           SK+R+T
Sbjct: 181 SKKRIT 186

[Close]

BLAST of CmoCh19G002180 vs. ExPASy TrEMBL
Match: A0A6J1HIZ2 (NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 6.0e-79
Identity = 140/151 (92.72%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 1   MDSHDSPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHD PLLPVGVRFRPTDQQLLQYL WKIH QPYFKRAVLDCDLYG+MEPWEIWLRFGG
Sbjct: 1   MDSHDRPLLPVGVRFRPTDQQLLQYLLWKIHDQPYFKRAVLDCDLYGDMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRK 120
           TDGE+LYFFTKLKRSTNNSGRLS HINRKVGL NGTWSGENSA+PIFAAKTDKTIIGY K
Sbjct: 61  TDGENLYFFTKLKRSTNNSGRLSVHINRKVGLTNGTWSGENSANPIFAAKTDKTIIGYCK 120

Query: 121 RFRYENAQSPEHHGKWIMHEYSLHQDSIQQA 152
           RFRYENAQ PEHHG+WIMHEYSLHQDSIQQA
Sbjct: 121 RFRYENAQLPEHHGEWIMHEYSLHQDSIQQA 151

[Close]

BLAST of CmoCh19G002180 vs. ExPASy TrEMBL
Match: A0A6J1HVP9 (NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC111467098 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.3e-75
Identity = 133/148 (89.86%), Postives = 135/148 (91.22%), Query Frame = 0


Query: 1   MDSHDSPLLPVGVRFRPTDQQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60
           MDSHD PLLPVGVRF+PTD QLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG
Sbjct: 1   MDSHDCPLLPVGVRFKPTDPQLLQYLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGG 60

Query: 61  TDGEDLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRK 120
            DGE LYFFTKLKR TNNSGRLSAHINRKVGLANGTWSGENS  PIFA KTD TIIGY K
Sbjct: 61  IDGEHLYFFTKLKRFTNNSGRLSAHINRKVGLANGTWSGENSGSPIFATKTDNTIIGYCK 120

Query: 121 RFRYENAQSPEHHGKWIMHEYSLHQDSI 149
           RFRYEN Q PE HG+WIMHEYSLHQDSI
Sbjct: 121 RFRYENVQLPERHGEWIMHEYSLHQDSI 148

[Close]

BLAST of CmoCh19G002180 vs. TAIR 10
Match: AT2G24430.1 (NAC domain containing protein 38 )

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-13
Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGTDGEDLY 68
           LP G RF PTD++L+  YL  KI  Q +  +A+ D DL  + EPWE+  +     G++ Y
Sbjct: 16  LPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDL-NKSEPWELPEK-AKMGGKEWY 75

Query: 69  FFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYENA 128
           FF+   R      R +   N       G W        IF + T + ++G +K   +   
Sbjct: 76  FFSLRDRKYPTGVRTNRATN------TGYWKTTGKDKEIFNSTTSE-LVGMKKTLVFYRG 135

Query: 129 QSPEHHGK-WIMHEYSLH-QDSIQQAVDSDYVLCR-FKKNERLKR 170
           ++P      W+MHEY LH + S + +   ++V+CR FKK E  K+
Sbjct: 136 RAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKK 171

[Close]

BLAST of CmoCh19G002180 vs. TAIR 10
Match: AT2G24430.2 (NAC domain containing protein 38 )

HSP 1 Score: 72.8 bits (177), Expect = 3.3e-13
Identity = 53/165 (32.12%), Postives = 82/165 (49.70%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLLQ-YLHWKIHGQPYFKRAVLDCDLYGEMEPWEIWLRFGGTDGEDLY 68
           LP G RF PTD++L+  YL  KI  Q +  +A+ D DL  + EPWE+  +     G++ Y
Sbjct: 16  LPPGFRFHPTDEELISYYLVNKIADQNFTGKAIADVDL-NKSEPWELPEK-AKMGGKEWY 75

Query: 69  FFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYENA 128
           FF+   R      R +   N       G W        IF + T + ++G +K   +   
Sbjct: 76  FFSLRDRKYPTGVRTNRATN------TGYWKTTGKDKEIFNSTTSE-LVGMKKTLVFYRG 135

Query: 129 QSPEHHGK-WIMHEYSLH-QDSIQQAVDSDYVLCR-FKKNERLKR 170
           ++P      W+MHEY LH + S + +   ++V+CR FKK E  K+
Sbjct: 136 RAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEATKK 171

[Close]

BLAST of CmoCh19G002180 vs. TAIR 10
Match: AT4G35580.1 (NAC transcription factor-like 9 )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYEN 128
           +FF    R   N  R     NR     +G W        I   K+ KT+IG +K   +  
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKKTLVFYR 128

Query: 129 AQSPE-HHGKWIMHEY--SLHQDSIQQAVDSDYVLCR 161
            ++P+     WIMHEY  +L          S YVLCR
Sbjct: 129 GRAPKGERTNWIMHEYRPTLKDLDGTSPGQSPYVLCR 155

[Close]

BLAST of CmoCh19G002180 vs. TAIR 10
Match: AT4G35580.2 (NAC transcription factor-like 9 )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYEN 128
           +FF    R   N  R     NR     +G W        I   K+ KT+IG +K   +  
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKKTLVFYR 128

Query: 129 AQSPE-HHGKWIMHEY--SLHQDSIQQAVDSDYVLCR 161
            ++P+     WIMHEY  +L          S YVLCR
Sbjct: 129 GRAPKGERTNWIMHEYRPTLKDLDGTSPGQSPYVLCR 155

[Close]

BLAST of CmoCh19G002180 vs. TAIR 10
Match: AT4G35580.3 (NAC transcription factor-like 9 )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 54/157 (34.39%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 9   LPVGVRFRPTDQQLL-QYLHWKIHGQPYFKRAVLDCDLYGEMEPWEI-WLRFGGTDGEDL 68
           LP+G RFRPTD++L+  YL  KI+G+    R + D D+  + EPW++  L    TD  + 
Sbjct: 9   LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDIDVC-KWEPWDLPALSVIKTDDPEW 68

Query: 69  YFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSADPIFAAKTDKTIIGYRKRFRYEN 128
           +FF    R   N  R     NR     +G W        I   K+ KT+IG +K   +  
Sbjct: 69  FFFCPRDRKYPNGHR----SNRATD--SGYWKATGKDRSI---KSKKTLIGMKKTLVFYR 128

Query: 129 AQSPE-HHGKWIMHEY--SLHQDSIQQAVDSDYVLCR 161
            ++P+     WIMHEY  +L          S YVLCR
Sbjct: 129 GRAPKGERTNWIMHEYRPTLKDLDGTSPGQSPYVLCR 155

The following BLAST results are available for this feature:

BLAST of CmoCh19G002180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8W9	6.7e-11	30.95	NAC domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=NAC030 PE=1 ...	[more]
F4JN35	1.5e-10	34.39	Protein NTM1-like 9 OS=Arabidopsis thaliana OX=3702 GN=NTL9 PE=1 SV=1	[more]
Q9SCK6	1.7e-09	29.70	NAC domain-containing protein 62 OS=Arabidopsis thaliana OX=3702 GN=NAC062 PE=1 ...	[more]
Q8GY42	4.8e-09	30.48	NAC transcription factor 25 OS=Arabidopsis thaliana OX=3702 GN=NAC025 PE=2 SV=1	[more]
Q52QH4	4.8e-09	32.58	NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica OX=39947 GN=NAC...	[more]

BLAST of CmoCh19G002180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH13	5.4e-96	91.94	NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A6J1HSR6	3.9e-94	89.84	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HXC3	2.1e-79	79.57	NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=...	[more]
A0A6J1HIZ2	6.0e-79	92.72	NAC transcription factor 25-like OS=Cucurbita moschata OX=3662 GN=LOC111463972 P...	[more]
A0A6J1HVP9	5.3e-75	89.86	NAC domain-containing protein 18-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]

BLAST of CmoCh19G002180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24430.1	3.3e-13	32.12	NAC domain containing protein 38	[more]
AT2G24430.2	3.3e-13	32.12	NAC domain containing protein 38	[more]
AT4G35580.1	1.1e-11	34.39	NAC transcription factor-like 9	[more]
AT4G35580.2	1.1e-11	34.39	NAC transcription factor-like 9	[more]
AT4G35580.3	1.1e-11	34.39	NAC transcription factor-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 10..143 e-value: 1.7E-21 score: 77.5
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 9..164 score: 25.357929
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 18..168 e-value: 1.3E-27 score: 98.5
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 4..162
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 9..172
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 9..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002180.1	CmoCh19G002180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding