CmoCh19G002110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh19G002110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NAC domain-containing protein
Location	Cmo_Chr19: 1410004 .. 1410660 (-)
RNA-Seq Expression	CmoCh19G002110
Synteny	CmoCh19G002110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATCTGGCTACGTTTTGGACTCATCGACGCAAACATCTCTATTTCTTCATCAAACTCAAGTGCCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAATGATACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCAGCTATCGCAAGTGCTTCAGGTTCGTTCTATGATTTTGATTTCAATTTTCGTTAGAATCTTTAACCTTTTGTTTGTATTCTTGGAACATTTTAGGTACAAGAATGTCCAATTGTCGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGATACACCAAATTGAAGATTCGAATTACATTTTATGTCGACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGGCCTAGATCGACCATTGAACAAGACACTATGTCTGACGTGACCATCGATGAAGATATGAGTTCATAATTTTGACAATGAATGGAACTTTTGCATTTTTTTTTCTTTTTCCGTTTATTAGAATGCAAACGTGACCATATTTTCCATGGCTCCATTTCTCCATAAAGATAACAGTCCGAGACTGCACCTTTGA

mRNA sequence

ATGAAAAATCTGGCTACGTTTTGGACTCATCGACGCAAACATCTCTATTTCTTCATCAAACTCAAGTGCCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAATGATACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCAGCTATCGCAAGTGCTTCAGGTACAAGAATGTCCAATTGTCGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGATACACCAAATTGAAGATTCGAATTACATTTTATGTCGACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGGCCTAGATCGACCATTGAACAAGACACTATGTCTGACAATGCAAACGTGACCATATTTTCCATGGCTCCATTTCTCCATAAAGATAACAGTCCGAGACTGCACCTTTGA

Coding sequence (CDS)

ATGAAAAATCTGGCTACGTTTTGGACTCATCGACGCAAACATCTCTATTTCTTCATCAAACTCAAGTGCCTGACCAATAACTCCGAACATCTGTGGGCCCATATCAACAGCAAGATTGGCTTGGCCAATGATACATGGAGTGGCGAGAACCTGGTCAAACCAATTTTTGCTACCAAGACCGATAAACAAATAATCAGCTATCGCAAGTGCTTCAGGTACAAGAATGTCCAATTGTCGGAGCATCATGGCGAATGGATTATGCATGAAGATTCGATACACCAAATTGAAGATTCGAATTACATTTTATGTCGACTTAGCAAGAATGAAAGACTTAAAAGAAAATTAGGAAAAAATCTTGAGCTACAGCGACATAGCAAGAAAAGAATAACGGGGCCTAGATCGACCATTGAACAAGACACTATGTCTGACAATGCAAACGTGACCATATTTTCCATGGCTCCATTTCTCCATAAAGATAACAGTCCGAGACTGCACCTTTGA

Protein sequence

MKNLATFWTHRRKHLYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYKNVQLSEHHGEWIMHEDSIHQIEDSNYILCRLSKNERLKRKLGKNLELQRHSKKRITGPRSTIEQDTMSDNANVTIFSMAPFLHKDNSPRLHL

Homology

[Close]

BLAST of CmoCh19G002110 vs. ExPASy TrEMBL
Match: A0A6J1HJD2 (uncharacterized protein LOC111464082 OS=Cucurbita moschata OX=3662 GN=LOC111464082 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 6.1e-51
Identity = 105/134 (78.36%), Postives = 113/134 (84.33%), Query Frame = 0


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK LTNNSEHLWA+IN KIGLAN TWSGEN   PIFATKTDKQII Y KCFRY+
Sbjct: 18  LYFFTKLKRLTNNSEHLWAYINRKIGLANGTWSGENSASPIFATKTDKQIIGYFKCFRYE 77

Query: 75  NVQLSEHHGEWIMHE-----DSIHQIEDSNYILCRLSKNERLKRKLGKNLELQRHSKKRI 134
           NVQL EHHGEW MHE     DSIHQ+ DS+Y+LCRLSKNER++RKL KNLELQ+HSKKRI
Sbjct: 78  NVQLPEHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKNERVERKLPKNLELQQHSKKRI 137

Query: 135 TGPRSTIEQDTMSD 144
           T P STI QDTMSD
Sbjct: 138 TAPGSTIGQDTMSD 151

[Close]

BLAST of CmoCh19G002110 vs. ExPASy TrEMBL
Match: A0A6J1HXC3 (NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 9.2e-47
Identity = 102/142 (71.83%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 13  KHLYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFR 72
           +HLYFF KLK  TNNS  L AHIN K+GLAN TWSGEN   PIFATKTDKQII Y KCFR
Sbjct: 64  EHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSGSPIFATKTDKQIIGYCKCFR 123

Query: 73  YKNVQLSEHHGEWIMHE-----DSIHQIEDSNYILCRLSKNERLKRKLGKNLELQRHSKK 132
           Y+N+QL +HHGEW MHE     DSIHQ+ DS+Y+LCRLSK+ RLKRKL KNLELQ+HSKK
Sbjct: 124 YENIQLPQHHGEWFMHEYSLHQDSIHQVVDSDYVLCRLSKHGRLKRKLPKNLELQQHSKK 183

Query: 133 RITGPRSTIEQDTMSDNANVTI 150
           RIT PRSTI QD MS   N+TI
Sbjct: 184 RITAPRSTIGQDIMS---NMTI 202

[Close]

BLAST of CmoCh19G002110 vs. ExPASy TrEMBL
Match: A0A6J1HSR6 (NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC111467095 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 9.5e-36
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 13  KHLYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFR 72
           +HLYFF KLK  TNNS  L AHIN K+GLAN TWSGEN   PIFATKTD  II Y K FR
Sbjct: 64  EHLYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASPIFATKTDNTIIGYCKRFR 123

Query: 73  YKNVQLSEHHGEWIMHE-----DSIHQIEDSNYILCRLSKNERLKRKLGKNLELQRHSKK 131
           Y+NVQL E HGEWIMHE     DSI Q  D +Y+LCR  KNERLKRKL K+LE Q+HSK+
Sbjct: 124 YENVQLPERHGEWIMHEYSLHQDSIQQAVDLDYVLCRFKKNERLKRKLQKDLEEQQHSKR 183

[Close]

BLAST of CmoCh19G002110 vs. ExPASy TrEMBL
Match: A0A6J1HH13 (NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463973 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 83/121 (68.60%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  TNNS  L AHIN K+GLAN TWSGEN    IFATKTDK II Y K FRY+
Sbjct: 66  LYFFTKLKRSTNNSGRLSAHINRKVGLANGTWSGENSASSIFATKTDKTIIGYCKRFRYE 125

Query: 75  NVQLSEHHGEWIMHE-----DSIHQIEDSNYILCRLSKNERLKRKLGKNLELQRHSKKRI 131
           N QL EHHGEWIMHE     DSI Q  DSNY+LCR  KNER KRKL K+LE Q+ SKKR+
Sbjct: 126 NAQLPEHHGEWIMHEYSLHQDSIQQAVDSNYVLCRFKKNERFKRKLQKDLEEQQLSKKRM 185

[Close]

BLAST of CmoCh19G002110 vs. ExPASy TrEMBL
Match: A0A5D3CNQ3 (NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00810 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 75/125 (60.00%), Postives = 88/125 (70.40%), Query Frame = 0


Query: 15  LYFFIKLKCLTNNSEHLWAHINSKIGLANDTWSGENLVKPIFATKTDKQIISYRKCFRYK 74
           LYFF KLK  T N   L AHI+ KIGLAN TWSGEN   PIFA + D+QII YRK FRY+
Sbjct: 71  LYFFTKLKRSTKNCGQLSAHISRKIGLANGTWSGENSATPIFANEDDEQIIGYRKRFRYE 130

Query: 75  NVQLSEHHGEWIMHEDSIHQI------EDSNYILCRLSKNERLKRKLGKNLELQRHSKKR 134
           N Q+ EHHGEWIMHE  +HQ        D NY+LCR+ KNER KRKL +  ELQ+ +KKR
Sbjct: 131 NDQVEEHHGEWIMHEYRLHQSYLAYQDVDHNYVLCRIRKNERAKRKL-EIRELQQPNKKR 190

The following BLAST results are available for this feature:

BLAST of CmoCh19G002110 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh19G002110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJD2	6.1e-51	78.36	uncharacterized protein LOC111464082 OS=Cucurbita moschata OX=3662 GN=LOC1114640...	[more]
A0A6J1HXC3	9.2e-47	71.83	NAC transcription factor 25-like OS=Cucurbita maxima OX=3661 GN=LOC111467099 PE=...	[more]
A0A6J1HSR6	9.5e-36	67.48	NAC domain-containing protein 72-like OS=Cucurbita maxima OX=3661 GN=LOC11146709...	[more]
A0A6J1HH13	1.1e-34	68.60	NAC domain-containing protein 30-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A5D3CNQ3	1.0e-29	60.00	NAC domain-containing protein 83-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of CmoCh19G002110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 2..112 e-value: 3.9E-8 score: 35.3
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 8..106
None	No IPR available	PANTHER	PTHR31989:SF220	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	coord: 13..142
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 13..142
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 1..108 score: 10.072023

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G002110.1	CmoCh19G002110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding