CmoCh19G001100 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh19G001100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNucleolar protein 10
LocationCmo_Chr19: 646440 .. 650595 (-)
RNA-Seq ExpressionCmoCh19G001100
SyntenyCmoCh19G001100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAGTGTTTAGCAACGATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGGTTTGTCTTTCTTGTTCGTTTTTTTATTTTATTTTATTTTATTTGCTCTTTGTTTAAAAGTTCATCGACATCACATCAATTGCTTAGCGGCGTTGAGTCCTTTGAAAAAAAAAAAATAAAAAAAATCTTAAATGCATGAACTGTGTCTGCCGCGTCTCAGATAAGCTGTGTTGTATGTACTCTCTGATTTTGAAGATAATGAAGGTTTATTTAGTCACTGACTATAAGTTTTGGAGATAGGATATTTGTGCAGGTCATCCTTAAAAGATTAGAGCTAGATCTCACTTGATATTGAAGTAGGCTACCATCATTAAGTGCGAGTCATTTGTGCAGTTGCATTTTCGTTGTTGTACCCATTAAATGATTGCCTAAATTTATAGTGCACCCTTACTTAGAATATCCAATTCTCCAAAAAGTTCACGGTAAGGTTTTGAGCTTTGTCTTATGAATTTCAAATCCTCCTTTCTTTTCTTCACCATTTCATGATGGCAGATTAGAGTTACCTTGGTCCCTTCCTTTGACCATGGAGGAGGAGAGGCTTTAGAGTTTAGAGTTTAGACGCCGTTCTTTCTCTACTGTCCGGGCTGGTAGAGATTTTAGCTATATTCTTATTGGGACTTTGTTTCTGCTTATATCGAAGCTGGTAGACATGGATAGATCTGTTTTGAGGCTGAGAAGTTCTTCAATGGCTTGCCAAATGGATTATCAGGGAGAGTTTGTTTTTTTTTTATAAGAGACAATTTCATTGATGAGTGAAATTTACAAGAGGGATCCATGATGTTTACGAAAGACCTTCCCAATTTGCAATGAGGGAGGTATAACTATAGGAAGTAAAAATATCAGACAGTTTACACCAAGATATAGCTTGGTAAACAACATTGTCGAAAAGTTTTGTGTAGGTTTGTGTCGTTTCTGCAAATATTCTCTGATTTCTTTCTTTCCACAGATTCCAAAAGAAAGCCATGATGAGGTTTTTCCATAATAGGGTTTTTGCGTTCTTGAAAGGGTGGTACGTTAAGGTCATATCCAAAAAATCCTTTACCTCCCTTGGAAATGTGAGATGCCATCCGAATATATTAAGAATCGTTGTCCAGAAATTTTGAGTGTATGTGCATTGCATAAACAAGTGACTTTGTGATTCATTTGCTTTCTTGCATAGTGGACACCAATTTTGAGAGAGAGTGATGTAAGGCATTCTTTTTTTGAAGATTTTCACTTGTGTTGATGGCTTTATGCACTATTTCCCAAAGGAAGAACTTCACCCTGATGTCCTTTCCATATTGTCTTTGCTAGCGTGAGATTTATTGCTTCTACTTTTTCCCCCATGTCCATCATCAAGGATTTTGTAGAAAAGACCCCGTCAGCGCTGTTAAGGATTTATTGCTTCTACTTTTTCCCCCTTGAAGAGAGTTTGTTAAGACAGTCCAAATATGTCAAGCAAATATGGTGTCTGGATAGGGTAAGCGCCCACCTGGCAAGAAAAAGGGATGGATGAAATAAGGTCCTAGAGCTTCATTGCTACTGTTATGTAATCCTTCCCACTTGCTAATTCAAACCATATAATTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNGTGGTGACAAGGTGCCAATGGAAGTTGAAACCTTTTAAGTTCAAGAATTTTTCAATGATTGGGACCCAAATAGGAGTTTATAGCCTTTCTTTGACAAACTAGCTACTCGTCTCAGTCAGAACTCTTATGACAAGCTAGTTACTCATCTGCAGAGAATAACTCTTGATGTGGGGACTCTCTTGGGGTCTTTGGCTTTACTCATTTAGGGCTTGCTTGACCCATCAATTTTTTGTGGTAAATTGGGCGGGGCAATCATATGCTCCATTTGGAAAGCGCTTTAGGAGATATAAGGACTACGATCTCTTAGAACTATTTTTTTTTTCTTTCATCCTACAAAAGGGGGGGAAAAAGAAAAAATCCTTGGAAAAGCCGAGAGACTTTAGAGGCCTCTCTTCCCATATATCTGACTGACAGAGGGAAGAGAGCAACCATCTAATCTATTCCTTGCCTTGCTTAGCTTACAGCCCATATATTTGACTGACAGAGGAAAGAGAGCAACCATCTAATCTATTCCTTGCCTTGCTTAGCTTACAGCCCATATATTTGACTGACAGAGGAAAGAGAGCAACCATCTAATCTATTCCTTGCCTTGCTTAGCTTACAGCCCATATATCTGACTGACAGAGGGAAGAGAGCAACCATCTAATCTATTCCTTGCCTTGCTTAGCTTACAGTCTGGTATGGGCTACCCACTCAAGATCAATGTGCAAGGTGTAGATAACTGGGATCAGTTTTCTTGGCATCCAAGTTAGTGATTGTTTCTCCTGGAAGGTGTTATTTGGTTAGCTTATTTATGGAGATCAATGCCTTTCTCATTTATCAAGTTTTTCAAGATCTTGTGGAGTCTCAAAATCCCAAAAGAACTCAGAACTTTTGGCTGGGCCTTCGCTTTTTGAGGATTGAGCTCTGCTAGTACTTTCCAAAGAGAGAAGTAAGATAGCAGGCATTGTTTCCTGTATAGTGTGAAGCTGTTGATGATCGTTTGAACATCTTTAGCCTCAAGTGATGCTCTCCCAAATTGTTTCCTGAAACTTTAGATAAAATTTTATGAATGTCTCATTTCTCCGAAAGTTCTTTTCATCGATATAAATGATGAAAATATTGTGGAAGCTGGGGTTGGAGATGGAATTGGAGGCCCTTTAAAATTCATATGTCATTAGAGTCTTTTGAAATATTGCAGGGGCCTGTGTAATTTACCCTGATTCTAATTATATCAACTTATTTTCCTGAATACACCATAATTGCCAAAGTTGTCCTGTTATGAAGCAACAAGAAAATATGTCTGATGCAATTCCACTTTGATTAGACAATTATCTAGAATGGTAAAACTCTAATATTGTAACCAAAAGATATGTAAGTCATAGTGCTGTAAGATATACAACAGGACTTTCATCGGAAAAATCTCCAAAGTTACTTTTACACACTCCACTGACGTGTGATTTCCCACGTCCAATTTCTTTCGATGGTATGGAGCCAGACCTGTTCTTGTGTTACTCTCTTTTCTCTCCCTCCTAGGGCATTTTTGTCTTCCTCCATGACATCAATTGACAACTAGAACACAGTACCATTGTGCTCTGCCAGTTTTGAGGCAGAGACAACATACTTATTGTTCAGGTTGCAATGATTCTGGATTTTATCAGCACCAAGTTGTATGTAACGGATTTGTACCAAGTTTTTAGAGTCGGTAGACTTCTTTTATTTTCCTTTTTGGTAGAATTGTACATTTTAAAATGCAAACCATTGTGCCACAAAATACAAATGAATTAATCCCTGCACACACATTTCAACTGGCTTGATAAAACATTGCTAATTCCCCCGCACTGTTTGTACTTTTTCTTGTGCTGATATCTAATTTATGCTAACGTATCTAGTTTGCATTTTCCTTTTTCTTGTACAGAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGGTAAAATTCTTTGCATTATCTTGCTAGTTTTCGGCCATCTCGTTTCCCTTATTTGCAGATTTAGAAATATCAATAATCTTGGTTGGGAGAAAGGCCATGCTGTAAAATCTGTGCTGTCATTCTTGTAATATGGGGATTGATTGAAACGATATATGTGGTCGATTTCAGTTGTTATTTTCACTGTGGCTGAGCCTATTGTGAAGATTGCAATTATACACTCTTGAGAATGGATTTAGGCTGTCGATATATATGCAGGCAACATTTATCATTGGTTGACATGTAGAAGAGGATAATGTCGTTGTTCACCTTTCTCCTTAGAGATGTCATCATTTGTTCTCTATATTGATTGAATTAATTCAGATAGTGCCCTCTATACCACCCCTTCGATGCGGTCATGGTTTTAGCAGTTTCGAACTCCTGATAACCTGTTGTACATTTTCTGTCTGCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCGAAGTACTGA

mRNA sequence

GTTGAGTGTTTAGCAACGATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGGTTTGTCTTTCTTATAAGCTGTGTTGTATGTACTCTCTGATTTTGAAGATAATGAAGTGTGAAGCTGTTGATGATCGTTTGAACATCTTTAGCCTCAAGGGCCTGTGTTGCAATGATTCTGGATTTTATCAGCACCAAGTTAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCGAAGTACTGA

Coding sequence (CDS)

GTTGAGTGTTTAGCAACGATGTATCTTATGTATTACATAAACGACAATGGTGACAAAGTCTACACCACAAAGGTTTGTCTTTCTTATAAGCTGTGTTGTATGTACTCTCTGATTTTGAAGATAATGAAGTGTGAAGCTGTTGATGATCGTTTGAACATCTTTAGCCTCAAGGGCCTGTGTTGCAATGATTCTGGATTTTATCAGCACCAAGTTAAAGAATCGCCTCTAGGTTTGGTCGCACAATCTGCTCATCCAGCTCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACACAGCAGCCGCCTCCGAAGTACTGA

Protein sequence

VECLATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Homology
[Close]
BLAST of CmoCh19G001100 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 8.8e-17
Identity = 51/111 (45.95%), Postives = 56/111 (50.45%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           MYL  YIN+ G+KVYTTK                                          
Sbjct: 1   MYLQCYINEKGEKVYTTK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Sbjct: 61  -----KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]
BLAST of CmoCh19G001100 vs. ExPASy Swiss-Prot
Match: Q9V5P6 (H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=CG7637 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-11
Identity = 44/111 (39.64%), Postives = 51/111 (45.95%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           MYLMY IN+NGD+VYT K                                          
Sbjct: 1   MYLMYTINENGDRVYTLK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                K +  G    SAHPARFSP+DKYSRQR+ +KKRFGLL TQ+P P Y
Sbjct: 61  -----KRTEDGRPTLSAHPARFSPEDKYSRQRLTIKKRFGLLLTQKPEPIY 64

[Close]
BLAST of CmoCh19G001100 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-11
Identity = 41/109 (37.61%), Postives = 49/109 (44.95%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           M+L +Y+N+NG++VYT K                                          
Sbjct: 1   MFLQFYLNENGERVYTLK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP 116
                K  P G    SAHPARFSPDDK+SR RV +KKRFGLL TQQP P
Sbjct: 61  -----KVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62

[Close]
BLAST of CmoCh19G001100 vs. ExPASy Swiss-Prot
Match: Q9P7M5 (H/ACA ribonucleoprotein complex subunit nop10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop10 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 9.4e-11
Identity = 43/111 (38.74%), Postives = 49/111 (44.14%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           M+LMYY+ND G +VYT K                                          
Sbjct: 1   MHLMYYLNDEGKRVYTLK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                K SP G V +S+HPARFSPDDKYSRQR  LKKRF +L TQ P   Y
Sbjct: 61  -----KVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64

[Close]
BLAST of CmoCh19G001100 vs. ExPASy Swiss-Prot
Match: Q9NPE3 (H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10
Identity = 40/109 (36.70%), Postives = 48/109 (44.04%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           M+L YY+N+ GD+VYT K                                          
Sbjct: 1   MFLQYYLNEQGDRVYTLK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPP 116
                K  P+G    SAHPARFSPDDKYSR R+ +KKRF +L TQQP P
Sbjct: 61  -----KFDPMGQQTCSAHPARFSPDDKYSRHRITIKKRFKVLMTQQPRP 62

[Close]
BLAST of CmoCh19G001100 vs. ExPASy TrEMBL
Match: A0A6J1HVE0 (Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111467025 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 64/111 (57.66%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           MYLMYYINDNGDKVYTTK                                          
Sbjct: 1   MYLMYYINDNGDKVYTTK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Sbjct: 61  -----KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]
BLAST of CmoCh19G001100 vs. ExPASy TrEMBL
Match: A0A6J1HGJ4 (Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111464097 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.2e-22
Identity = 64/111 (57.66%), Postives = 64/111 (57.66%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           MYLMYYINDNGDKVYTTK                                          
Sbjct: 1   MYLMYYINDNGDKVYTTK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Sbjct: 61  -----KESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]
BLAST of CmoCh19G001100 vs. ExPASy TrEMBL
Match: A0A443NZR2 (Nucleolar protein 10 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01276300 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 60/113 (53.10%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 5   ATMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDS 64
           A MYL YYIN+NGDKVYTTK                                        
Sbjct: 60  AAMYLQYYINENGDKVYTTK---------------------------------------- 119

Query: 65  GFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                  KESPLG+  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Sbjct: 120 -------KESPLGVATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 125

[Close]
BLAST of CmoCh19G001100 vs. ExPASy TrEMBL
Match: A0A1S3BHD2 (Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 60/111 (54.05%), Postives = 61/111 (54.95%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           MYL +YINDNGDKVYTTK                                          
Sbjct: 1   MYLQFYINDNGDKVYTTK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                KESPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Sbjct: 61  -----KESPLGLATQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 64

[Close]
BLAST of CmoCh19G001100 vs. ExPASy TrEMBL
Match: K7MYQ3 (Nucleolar protein 10 OS=Glycine max OX=3847 GN=GLYMA_19G165900 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 60/112 (53.57%), Postives = 62/112 (55.36%), Query Frame = 0 

Query: 6   TMYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSG 65
           TMYL +YINDNGDKVYTTK                                         
Sbjct: 56  TMYLQFYINDNGDKVYTTK----------------------------------------- 115

Query: 66  FYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                 K+SPLGL  QSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY
Sbjct: 116 ------KDSPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 120

[Close]
BLAST of CmoCh19G001100 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 87.8 bits (216), Expect = 6.2e-18
Identity = 51/111 (45.95%), Postives = 56/111 (50.45%), Query Frame = 0 

Query: 7   MYLMYYINDNGDKVYTTKVCLSYKLCCMYSLILKIMKCEAVDDRLNIFSLKGLCCNDSGF 66
           MYL  YIN+ G+KVYTTK                                          
Sbjct: 1   MYLQCYINEKGEKVYTTK------------------------------------------ 60

Query: 67  YQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
                KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Sbjct: 61  -----KESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]
BLAST of CmoCh19G001100 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-17
Identity = 40/56 (71.43%), Postives = 45/56 (80.36%), Query Frame = 0 

Query: 62  NDSGFYQHQVKESPLGLVAQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 118
           N+ G   +  KESPLGL  +SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ  P +Y
Sbjct: 8   NEKGEKVYTTKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 63

The following BLAST results are available for this feature:
BLAST of CmoCh19G001100 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93XX88.8e-1745.95H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O... [more]
Q9V5P61.1e-1139.64H/ACA ribonucleoprotein complex subunit 3 OS=Drosophila melanogaster OX=7227 GN=... [more]
Q6DRH53.2e-1137.61H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S... [more]
Q9P7M59.4e-1138.74H/ACA ribonucleoprotein complex subunit nop10 OS=Schizosaccharomyces pombe (stra... [more]
Q9NPE31.2e-1036.70H/ACA ribonucleoprotein complex subunit 3 OS=Homo sapiens OX=9606 GN=NOP10 PE=1 ... [more]
BLAST of CmoCh19G001100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HVE03.2e-2257.66Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111467025 PE=3 SV=1[more]
A0A6J1HGJ43.2e-2257.66Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111464097 PE=3 SV=1[more]
A0A443NZR22.3e-2053.10Nucleolar protein 10 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_012... [more]
A0A1S3BHD23.0e-2054.05Nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103489864 PE=3 SV=1[more]
K7MYQ33.0e-2053.57Nucleolar protein 10 OS=Glycine max OX=3847 GN=GLYMA_19G165900 PE=3 SV=1[more]
BLAST of CmoCh19G001100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G20490.16.2e-1845.95nucleolar RNA-binding Nop10p family protein [more]
AT2G20490.23.1e-1771.43nucleolar RNA-binding Nop10p family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PFAMPF04135Nop10pcoord: 75..105
e-value: 1.2E-12
score: 47.6
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 71..117
IPR007264H/ACA ribonucleoprotein complex, subunit Nop10PANTHERPTHR13305RIBOSOME BIOGENESIS PROTEIN NOP10coord: 7..24
NoneNo IPR availableGENE3D4.10.80.300coord: 7..28
e-value: 1.0E-5
score: 27.1
NoneNo IPR availableGENE3D2.20.28.40H/ACA ribonucleoprotein complex, subunit Nop10coord: 34..107
e-value: 4.0E-10
score: 41.5
NoneNo IPR availablePANTHERPTHR13305:SF2H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3-LIKE PROTEINcoord: 71..117
NoneNo IPR availablePANTHERPTHR13305:SF2H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3-LIKE PROTEINcoord: 7..24
IPR036756H/ACA ribonucleoprotein complex, subunit Nop10 superfamilySUPERFAMILY144210Nop10-like SnoRNPcoord: 61..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G001100.1CmoCh19G001100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005634 nucleus
molecular_function GO:0030515 snoRNA binding