![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh19G001060 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCTCATGTTCTCGAATTCCTCAGGTACCGAACAAAGAAGTAATTTTAAAAAAAAGGGCACCGATTGCCTTTATCTGGTGTCAAAATTTTCTAGTTCGATCGATCGATCGATCGACTTGTGCGTATATCCAAAAATCTTTCTCGTTTGTAGGTATTTGGATCAATTTGGAAAGACGAAAGTGCACACAGCTATTTGCCCTTTCTATGGACTTCTGAACCCTCCCGCGCCATGCCCGTGCCCTCTACGACAAGCGTGGGGTAGTCTCGACGCGTTGGTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTCAAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAAAAGATGCAAACTTTCAAAGGGAAATAACGAACACAACAAATTCACCAATTGGGTATTGCTCTAAACCTAATTATAAATCATGGGTTTTGCTTAATTTTTCATTTTCTTTTTTTTTTCTTGAATAAATTAAGGGTTTTTACTCTCTCTATTTCCTCTAGGGTTTGGTAAATTTCAAGCATTTTTTACCCTCTTTTCTTTGCTATGGTGAATAAATTTTTCTGAAAAAGCTTCTAAGAAGACTGTGAAAAGGTGTAAATCTCTGCTTTTGATGCAAATACTATCAGTGTTACTATTTGTGCACTTATGCTCAACGTTTGTAAATCTTGTTCATGTTTGTATTTAAATTAATCATCATTTTGTTGTCTTAATTTTAG ATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCTCATGTTCTCGAATTCCTCAGGTACCGAACAAAGAAGTAATTTTAAAAAAAAGGGCACCGATTGCCTTTATCTGGTGTCAAAATTTTCTAGTTCGATCGATCGATCGATCGACTTGTATTTGGATCAATTTGGAAAGACGAAAGTGCACACAGCTATTTGCCCTTTCTATGGACTTCTGAACCCTCCCGCGCCATGCCCGTGCCCTCTACGACAAGCGTGGGGTAGTCTCGACGCGTTGGTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTCAAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAAAAGATGCAAACTTTCAAAGGGAAATAACGAACACAACAAATTCACCAATTGGGTATTGCTCTAAACCTAATTATAAATCATGGGTTTTGCTTAATTTTTCATTTTCTTTTTTTTTTCTTGAATAAATTAAGGGTTTTTACTCTCTCTATTTCCTCTAGGGTTTGGTAAATTTCAAGCATTTTTTACCCTCTTTTCTTTGCTATGGTGAATAAATTTTTCTGAAAAAGCTTCTAAGAAGACTGTGAAAAGGTGTAAATCTCTGCTTTTGATGCAAATACTATCAGTGTTACTATTTGTGCACTTATGCTCAACGTTTGTAAATCTTGTTCATGTTTGTATTTAAATTAATCATCATTTTGTTGTCTTAATTTTAG ATGAGAATCAAAAGCGTCGCGATTGGAAAACTTTCGGTCAATATCTCAACAATCATCGCCCTCCGCTCGCTCTCTCGAGATGCAGCGGTGCTCATGTTCTCGAATTCCTCAGGTACCGAACAAAGAAGTAATTTTAAAAAAAAGGGCACCGATTGCCTTTATCTGGTGTCAAAATTTTCTAGTTCGATCGATCGATCGATCGACTTGTATTTGGATCAATTTGGAAAGACGAAAGTGCACACAGCTATTTGCCCTTTCTATGGACTTCTGAACCCTCCCGCGCCATGCCCGTGCCCTCTACGACAAGCGTGGGGTAGTCTCGACGCGTTGGTTGGCCGCCTTCGAGCCGCTTTCGAAGAGAATGGTGGGAAGCCTGAAGCCAATCCATTTGGGGCTAGAGCTGTGAGGCTCTATCTTCGTGAAGTTCGTGATTTGCAGTCAAAAGCTAGAGGGATTAGCTATGAGAAGAAAAGAAAGCGCCCACAAGCACCTCATGGTGCACCAAGATCATCATAA MRIKSVAIGKLSVNISTIIALRSLSRDAAVLMFSNSSGTEQRSNFKKKGTDCLYLVSKFSSSIDRSIDLYLDQFGKTKVHTAICPFYGLLNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKRKRPQAPHGAPRSS Homology
BLAST of CmoCh19G001060 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 2.1e-43 Identity = 83/102 (81.37%), Postives = 90/102 (88.24%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.5e-41 Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.5e-41 Identity = 77/98 (78.57%), Postives = 88/98 (89.80%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.0e-41 Identity = 95/167 (56.89%), Postives = 111/167 (66.47%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy Swiss-Prot
Match: A2YG32 (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 4.4e-41 Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy TrEMBL
Match: A0A6J1HV32 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111466976 PE=3 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 3.4e-52 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy TrEMBL
Match: A0A6J1HJE1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111464090 PE=3 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 3.4e-52 Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy TrEMBL
Match: A0A5D3DAV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001490 PE=3 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 8.0e-46 Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy TrEMBL
Match: A0A1S3BGU6 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489867 PE=3 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 8.0e-46 Identity = 92/94 (97.87%), Postives = 92/94 (97.87%), Query Frame = 0
BLAST of CmoCh19G001060 vs. ExPASy TrEMBL
Match: A0A0A0L7E1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383760 PE=3 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 1.0e-45 Identity = 95/106 (89.62%), Postives = 95/106 (89.62%), Query Frame = 0
BLAST of CmoCh19G001060 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 176.8 bits (447), Expect = 1.5e-44 Identity = 83/102 (81.37%), Postives = 90/102 (88.24%), Query Frame = 0
BLAST of CmoCh19G001060 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) ) HSP 1 Score: 170.2 bits (430), Expect = 1.4e-42 Identity = 95/167 (56.89%), Postives = 111/167 (66.47%), Query Frame = 0
BLAST of CmoCh19G001060 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 168.3 bits (425), Expect = 5.3e-42 Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0
BLAST of CmoCh19G001060 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40 Identity = 84/138 (60.87%), Postives = 102/138 (73.91%), Query Frame = 0
BLAST of CmoCh19G001060 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 156.4 bits (394), Expect = 2.1e-38 Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|