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CmoCh19G001050 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTCAATAATCCCTGAATTTGAAGGTCTCAACAACACCCAACAATTTGGAGTGTCAAATCTTCAAAATTTAGGTATTGGGTCATCTTCATCTTCATCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTTAAAAATCACCGACCGCCATTAGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGTAAGACCAAAGTGCATACTCCGATCTGCCCTTTCTATGGCCATCCTAACCCACCAGCTCCATGTCCTTGCCCTCTACGCCAAGCTTGGGGTAGCCTTGATGCCCTTATTGGCCGCCTTCGAGCTGCCTTTGAAGAGAATGGTGGGATGCCTGAAGCTAACCCTTTTGGTGCTCGTGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGATTTGCAGTCTAAAGCAAGAGGAATTAGCTATGAAAAGAAGAAACGAAAGCGCCCTCAACAACAACGACAACAACAACAGCTCCCTCAACCTTCCAATGGAGCTTAA ATGGATTCAATAATCCCTGAATTTGAAGGTATTGGGTCATCTTCATCTTCATCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTTAAAAATCACCGACCGCCATTAGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGTAAGACCAAAGTGCATACTCCGATCTGCCCTTTCTATGGCCATCCTAACCCACCAGCTCCATGTCCTTGCCCTCTACGCCAAGCTTGGGGTAGCCTTGATGCCCTTATTGGCCGCCTTCGAGCTGCCTTTGAAGAGAATGGTGGGATGCCTGAAGCTAACCCTTTTGGTGCTCGTGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGATTTGCAGTCTAAAGCAAGAGGAATTAGCTATGAAAAGAAGAAACGAAAGCGCCCTCAACAACAACGACAACAACAACAGCTCCCTCAACCTTCCAATGGAGCTTAA ATGGATTCAATAATCCCTGAATTTGAAGGTATTGGGTCATCTTCATCTTCATCAAACAGCCGCTATGAGAATCAAAAACGGCGAGATTGGAACACATTTTGCCAATACCTTAAAAATCACCGACCGCCATTAGCTCTTTCAAGGTGTAGTGGAGCTCATGTTCTTGAATTCCTTCGCTATTTGGACCAATTTGGTAAGACCAAAGTGCATACTCCGATCTGCCCTTTCTATGGCCATCCTAACCCACCAGCTCCATGTCCTTGCCCTCTACGCCAAGCTTGGGGTAGCCTTGATGCCCTTATTGGCCGCCTTCGAGCTGCCTTTGAAGAGAATGGTGGGATGCCTGAAGCTAACCCTTTTGGTGCTCGTGCTGTTAGGCTTTATCTTCGTGAGGTTCGTGATTTGCAGTCTAAAGCAAGAGGAATTAGCTATGAAAAGAAGAAACGAAAGCGCCCTCAACAACAACGACAACAACAACAGCTCCCTCAACCTTCCAATGGAGCTTAA MDSIIPEFEGIGSSSSSSNSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQRQQQQLPQPSNGA Homology
BLAST of CmoCh19G001050 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 1.4e-71 Identity = 127/140 (90.71%), Postives = 134/140 (95.71%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 2.0e-70 Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1) HSP 1 Score: 266.5 bits (680), Expect = 2.0e-70 Identity = 123/140 (87.86%), Postives = 134/140 (95.71%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1) HSP 1 Score: 264.2 bits (674), Expect = 9.8e-70 Identity = 124/141 (87.94%), Postives = 131/141 (92.91%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 2.7e-67 Identity = 119/148 (80.41%), Postives = 136/148 (91.89%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy TrEMBL
Match: A0A6J1HQU3 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111466975 PE=3 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88 Identity = 168/184 (91.30%), Postives = 168/184 (91.30%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy TrEMBL
Match: A0A6J1HLN0 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111464089 PE=3 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.3e-88 Identity = 168/184 (91.30%), Postives = 168/184 (91.30%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy TrEMBL
Match: A0A5D3BLY0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31142G00010 PE=3 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 3.5e-78 Identity = 154/193 (79.79%), Postives = 158/193 (81.87%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy TrEMBL
Match: A0A0A0LB62 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 3.5e-78 Identity = 154/193 (79.79%), Postives = 158/193 (81.87%), Query Frame = 0
BLAST of CmoCh19G001050 vs. ExPASy TrEMBL
Match: A0A1S3BHE8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489869 PE=3 SV=1) HSP 1 Score: 300.8 bits (769), Expect = 3.5e-78 Identity = 154/193 (79.79%), Postives = 158/193 (81.87%), Query Frame = 0
BLAST of CmoCh19G001050 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 270.4 bits (690), Expect = 9.7e-73 Identity = 127/140 (90.71%), Postives = 134/140 (95.71%), Query Frame = 0
BLAST of CmoCh19G001050 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) ) HSP 1 Score: 264.2 bits (674), Expect = 7.0e-71 Identity = 124/141 (87.94%), Postives = 131/141 (92.91%), Query Frame = 0
BLAST of CmoCh19G001050 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 247.7 bits (631), Expect = 6.8e-66 Identity = 122/155 (78.71%), Postives = 135/155 (87.10%), Query Frame = 0
BLAST of CmoCh19G001050 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 241.1 bits (614), Expect = 6.3e-64 Identity = 110/140 (78.57%), Postives = 126/140 (90.00%), Query Frame = 0
BLAST of CmoCh19G001050 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) ) HSP 1 Score: 237.3 bits (604), Expect = 9.1e-63 Identity = 114/163 (69.94%), Postives = 133/163 (81.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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