CmoCh19G000400 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAATTTACTTCTAAATCTTCATTTCCCTGAAGACTAGCCGTTGCAACCTTCTTCCTCTACCTCATGGAACCGTCTGTGGAGTCTCCATCATCATCTTCACATCCCAACCAGGTTCGTTTACTGGACACCCTTGTCGTGTCGGATTTTCATTTTCTGATGTATTTTCAGCTGATTTCTTAGGGACCGACCAGCTTCATGGGTTCGCCCCCATTGTCCAGCCCTGATTCCGACCAGCGTTTCTGGAGCTCCCTTCTAGGTCGGGTCGACTCGCTCCTTGAGCAACGAAATGCCAAATCTTCAAATCTTGTGAGTGCTTTTCTCTTCGAGTTCTTCGTTTTCGAGCTAAGCGTTTTTCCATGTCAATGGAGCTTGAAAATTCATGGGTTTGTGGGGATAGAACACGAACAAATCGGATAGGGCAAAGAGATTGAAGGAAGATTCTTTGCTTTTGATGAGAGGATTCGACTCTGTTGGCTATACTCTGTCTCAGCTTTCCAACAATTTGGATAACGCCTTGCAGGTAAACGCCACTCTCCACTCTTCCGTTTTTTGTATTCTGTACTGCGAATTGTTGGGAGGGAGTCTCACATGGGCTAATTTAGGGAATGATCGTAAGTTTACAAGTAGGAGATACATCTCCACTTGTACGAGGCCTTTTGGCCGCCCAAAGCAATGCCATGAGAGCCTATGCTCAAAGTGGACAATATGATACTACTGTGGAGAGTCGTGATTCCTAACATGGTATTAGAGCCATGCCCTTAACTTACCATGTCAATAGAATTCTCAAATGTGGAACAAAGAAGTTGTGAGCCTCAAAGGCGTAGTCAAAAGTGACTTGAATATCGAACAAAGGGTGTACTTTGTTCAAGGACTCCAGAGAAGGAGTCGAGCCTCGATTAAGGGGAGAGGCTGTTCGAGGGCTTCATAGGCCTCAGGAGAGGCTCTATAGTGTACTTTGTTCGAGGAGAGGATGGTTGGGAGGAAATCCTGCGTTGAATAATTTAGGGAATGATCATAGGTTTATAAGTAAAGAATACACCTTCATTGGTATGAGGCCTTTTGGGGGAGTCCAAAGTAAAGCCACGGGAGCTTATGCTCAAAGTGGACAATATCACACTATTGTGCAGAGTCGTGATTCCTAGCCCCACAAAACCAAGATTTGATTTCGAGGGCTGATTCCAGGGCGCTAAGGATCTGGTTCAAGCACCAACCTTGACGGAGATCTTCCAAAGCAACCTCAAGAACTCCGAGGTTGAGCATGAGTTGGTGGAGCTCAAGCAAGCAACAAAGAGAAAATATGATGATACTCATTGCTCAGAAGATTCAGAGGTTAATTTAGAGAAAGAAAACCGGCAAAACCCAACAGACAACCTTAAAAAGGCTAAACATGTTGGTTCCTTACCTCTGTCATCTGTATTTGAACAAGTTCTTATGCAATATTAACCTTTTGGCCTGCGTTTCTCCAGCTTGCAGTTGCAATGGCAACAAAAACATCATCTCTAGCAAGAGAATTAAAATCATTAAAATCCAATATATGTTTTATGCAAGAACGATGCGCCATACTTGATGAAGAGAATAGGAGACTTCGAAACGGTGTTTCCACCGGGGTCAAACCGGAAGAAGATGATCTGGTTCGTACTATTCTTATGATGATTATTTGTTCTTCCTTCCCACTTTTGTTTATGTGTAGTCTATGTTGATGAGAGGAAGTCCCGCTTATACCCAAAGTAGACAATATTATACCATTGTGGAGAGTCGTGATTCCAAACATAGTACCAGAGCCATACCCTTAACTTAGCTATGTCAATAGAATCCTCAAATGTCGAACAAAAAAGTTGTGAGCCTTGAAGATGTAACCAAAAGTGACTTAAGTTTCGAACAAGAGGTGTACTTTGTTCGAGGACTCCAAAGAAAGAGTTGAGTCTCGATTAAGGGGAGGCTGATCGAGGGCTCCATAGGCCTCAGGGGAGGCTCTATAGTGTACTTTGTTTGAGGAGAAGATTGTTGGGAGGGAGTCCCACATTGGCTAGTTTAGGGAATGATCATGAGTTTATAAGTAATAAATATATCTCCGTTAGTATGAGGTCCTTTGGGGAAGCCTAAAACAAAGTCACGAGAGCTTATGCTCAAAGTGACAATATTATACCATTATGGAGAGTCGTGATTCCTAACTGTCTATTTGGTGATAAATCAGGTTAGGCTTCAAATGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAACGAAAATGCAAACTTAACAAGGGAAAATCAATGCCTTTACCAGCTTGCGGAGTATCACCAGCTCACATCCCAAGATCTTTCGCTATCTTACGACGAAGCCATCGGCATGTGTTTGGACTTCTCGTCACCACCACCTGCCATTGTCGAAGGAGCTGAAGGACAAGGACAAGGACAGGGACGAGCTGAAGGACAGGGACAAGGACAAAGACAGGGACAGGGACAATGTGACTATTGACAAAGAAATTACTCAAACATCTAGAGCTGATCGTTTTAGCGTTTCTACCTCTCTTGATGAACTCCGCCAAGAGTAGAGGTGATTCCGGACCAGAAAACGCAGGCTCGAACATTGGTTGCTTCTCGTTCACAATACTGTAACCCAGTTAACTCAATCTTCACTGCATTTAGTTCAGAAATAAATCTATGGTCATAGCATTTTCTACACTGTCGTATTCGTCTACTATCAAACCAGGTTCCAT TGAATTTACTTCTAAATCTTCATTTCCCTGAAGACTAGCCGTTGCAACCTTCTTCCTCTACCTCATGGAACCGTCTGTGGAGTCTCCATCATCATCTTCACATCCCAACCAGGGACCGACCAGCTTCATGGGTTCGCCCCCATTGTCCAGCCCTGATTCCGACCAGCGTTTCTGGAGCTCCCTTCTAGGTCGGGTCGACTCGCTCCTTGAGCAACGAAATGCCAAATCTTCAAATCTTAACACGAACAAATCGGATAGGGCAAAGAGATTGAAGGAAGATTCTTTGCTTTTGATGAGAGGATTCGACTCTGTTGGCTATACTCTGTCTCAGCTTTCCAACAATTTGGATAACGCCTTGCAGGGCGCTAAGGATCTGGTTCAAGCACCAACCTTGACGGAGATCTTCCAAAGCAACCTCAAGAACTCCGAGGTTGAGCATGAGTTGGTGGAGCTCAAGCAAGCAACAAAGAGAAAATATGATGATACTCATTGCTCAGAAGATTCAGAGCTTGCAGTTGCAATGGCAACAAAAACATCATCTCTAGCAAGAGAATTAAAATCATTAAAATCCAATATATGTTTTATGCAAGAACGATGCGCCATACTTGATGAAGAGAATAGGAGACTTCGAAACGGTGTTTCCACCGGGGTCAAACCGGAAGAAGATGATCTGGTTAGGCTTCAAATGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAACGAAAATGCAAACTTAACAAGGGAAAATCAATGCCTTTACCAGCTTGCGGAGTATCACCAGCTCACATCCCAAGATCTTTCGCTATCTTACGACGAAGCCATCGGCATGTGTTTGGACTTCTCGTCACCACCACCTGCCATTGTCGAAGGAGCTGAAGGACAAGGACAAGGACAGGGACGAGCTGAAGGACAGGGACAAGGACAAAGACAGGGACAGGGACAATGTGACTATTGACAAAGAAATTACTCAAACATCTAGAGCTGATCGTTTTAGCGTTTCTACCTCTCTTGATGAACTCCGCCAAGAGTAGAGGTGATTCCGGACCAGAAAACGCAGGCTCGAACATTGGTTGCTTCTCGTTCACAATACTGTAACCCAGTTAACTCAATCTTCACTGCATTTAGTTCAGAAATAAATCTATGGTCATAGCATTTTCTACACTGTCGTATTCGTCTACTATCAAACCAGGTTCCAT ATGGAACCGTCTGTGGAGTCTCCATCATCATCTTCACATCCCAACCAGGGACCGACCAGCTTCATGGGTTCGCCCCCATTGTCCAGCCCTGATTCCGACCAGCGTTTCTGGAGCTCCCTTCTAGGTCGGGTCGACTCGCTCCTTGAGCAACGAAATGCCAAATCTTCAAATCTTAACACGAACAAATCGGATAGGGCAAAGAGATTGAAGGAAGATTCTTTGCTTTTGATGAGAGGATTCGACTCTGTTGGCTATACTCTGTCTCAGCTTTCCAACAATTTGGATAACGCCTTGCAGGGCGCTAAGGATCTGGTTCAAGCACCAACCTTGACGGAGATCTTCCAAAGCAACCTCAAGAACTCCGAGGTTGAGCATGAGTTGGTGGAGCTCAAGCAAGCAACAAAGAGAAAATATGATGATACTCATTGCTCAGAAGATTCAGAGCTTGCAGTTGCAATGGCAACAAAAACATCATCTCTAGCAAGAGAATTAAAATCATTAAAATCCAATATATGTTTTATGCAAGAACGATGCGCCATACTTGATGAAGAGAATAGGAGACTTCGAAACGGTGTTTCCACCGGGGTCAAACCGGAAGAAGATGATCTGGTTAGGCTTCAAATGGAGGCACTGCTAGCTGAGAAATCAAGATTAGCAAACGAAAATGCAAACTTAACAAGGGAAAATCAATGCCTTTACCAGCTTGCGGAGTATCACCAGCTCACATCCCAAGATCTTTCGCTATCTTACGACGAAGCCATCGGCATGTGTTTGGACTTCTCGTCACCACCACCTGCCATTGTCGAAGGAGCTGAAGGACAAGGACAAGGACAGGGACGAGCTGAAGGACAGGGACAAGGACAAAGACAGGGACAGGGACAATGTGACTATTGA MEPSVESPSSSSHPNQGPTSFMGSPPLSSPDSDQRFWSSLLGRVDSLLEQRNAKSSNLNTNKSDRAKRLKEDSLLLMRGFDSVGYTLSQLSNNLDNALQGAKDLVQAPTLTEIFQSNLKNSEVEHELVELKQATKRKYDDTHCSEDSELAVAMATKTSSLARELKSLKSNICFMQERCAILDEENRRLRNGVSTGVKPEEDDLVRLQMEALLAEKSRLANENANLTRENQCLYQLAEYHQLTSQDLSLSYDEAIGMCLDFSSPPPAIVEGAEGQGQGQGRAEGQGQGQRQGQGQCDY Homology
BLAST of CmoCh19G000400 vs. ExPASy TrEMBL
Match: A0A6J1HHY1 (uncharacterized protein LOC111463807 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463807 PE=4 SV=1) HSP 1 Score: 550.4 bits (1417), Expect = 4.5e-153 Identity = 297/317 (93.69%), Postives = 297/317 (93.69%), Query Frame = 0
BLAST of CmoCh19G000400 vs. ExPASy TrEMBL
Match: A0A6J1HK88 (uncharacterized protein LOC111463807 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463807 PE=4 SV=1) HSP 1 Score: 519.2 bits (1336), Expect = 1.1e-143 Identity = 279/302 (92.38%), Postives = 281/302 (93.05%), Query Frame = 0
BLAST of CmoCh19G000400 vs. ExPASy TrEMBL
Match: A0A6J1HG94 (uncharacterized protein LOC111463807 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463807 PE=4 SV=1) HSP 1 Score: 512.3 bits (1318), Expect = 1.4e-141 Identity = 276/296 (93.24%), Postives = 276/296 (93.24%), Query Frame = 0
BLAST of CmoCh19G000400 vs. ExPASy TrEMBL
Match: A0A6J1HWL1 (uncharacterized protein LOC111466940 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466940 PE=4 SV=1) HSP 1 Score: 481.5 bits (1238), Expect = 2.6e-132 Identity = 260/300 (86.67%), Postives = 271/300 (90.33%), Query Frame = 0
BLAST of CmoCh19G000400 vs. ExPASy TrEMBL
Match: A0A6J1HFE4 (uncharacterized protein LOC111463807 isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111463807 PE=4 SV=1) HSP 1 Score: 445.7 bits (1145), Expect = 1.6e-121 Identity = 248/297 (83.50%), Postives = 248/297 (83.50%), Query Frame = 0
BLAST of CmoCh19G000400 vs. TAIR 10
Match: AT4G02800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 3209 Blast hits to 2720 proteins in 308 species: Archae - 13; Bacteria - 213; Metazoa - 1207; Fungi - 247; Plants - 183; Viruses - 21; Other Eukaryotes - 1325 (source: NCBI BLink). ) HSP 1 Score: 260.0 bits (663), Expect = 2.3e-69 Identity = 156/302 (51.66%), Postives = 206/302 (68.21%), Query Frame = 0
BLAST of CmoCh19G000400 vs. TAIR 10
Match: AT5G01970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). ) HSP 1 Score: 105.1 bits (261), Expect = 9.6e-23 Identity = 87/263 (33.08%), Postives = 136/263 (51.71%), Query Frame = 0
BLAST of CmoCh19G000400 vs. TAIR 10
Match: AT2G30530.1 (unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink). ) HSP 1 Score: 98.2 bits (243), Expect = 1.2e-20 Identity = 81/247 (32.79%), Postives = 131/247 (53.04%), Query Frame = 0
BLAST of CmoCh19G000400 vs. TAIR 10
Match: AT1G30050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 246 Blast hits to 244 proteins in 61 species: Archae - 0; Bacteria - 8; Metazoa - 78; Fungi - 10; Plants - 117; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). ) HSP 1 Score: 94.7 bits (234), Expect = 1.3e-19 Identity = 74/259 (28.57%), Postives = 127/259 (49.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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