Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA
mRNA sequence
ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA
Coding sequence (CDS)
ATGAAAGCTCTGGTGTGTTCCTTCCGGCACGCTCTACACCTCTCGAAGCCTCCGCCATGGAAACAGAGAAGCCGAATCGATGACTCAACGACCACGAAGAATCTCAGAATTTTCACAAGAACATCCCGAGGCCAGATCCAACTAAACGCCAAGGGTTTCACAGGTTCTCCGGCAACAGCGAAAGACAGAGAAACCGCCGTGAAAAAACCTTCCGGCCAAAACAATAGCAGAGACGGCGGCGGCGACGACGATGAAATTCCAGAGGCCGTAGCCAAGAGGATCATAACGAGAATCTTGGCTTTCGTTGGAGTTCCGATGGCGTTCGGCGTGACATTGGTGAAGATCTTAGAGGCGGTCCATGAGCAGAAACTTTGGCATGTGCCAATTTGGCTGCCGTTCTTGACGATTTTCTTGACATTTGGAGCTTCGACGATGGGAATCGCTTACGGGACGCTGTCGACGAGTTTGGATCCGGAGAAGGAAGGGACTCTGTTTGGATGGGATGAGGCGCAGAAGAATTGGGTTGAGATGTGGAAGGAGGAAGACGAAGCCAATCGTGGAGGAAACTAA
Protein sequence
MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKEEDEANRGGN
Homology
BLAST of CmoCh18G013030 vs. ExPASy Swiss-Prot
Match:
Q9LTD9 (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)
HSP 1 Score: 120.9 bits (302), Expect = 1.5e-26
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 0
Query: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSR----GQIQLNAKGFTGS 60
M+AL+CS R P SR T + N + ++ ++ KGF S
Sbjct: 1 MRALLCSHRLL-------PLSSLSRTTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSS 60
Query: 61 PATAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKIL 120
+ +KP + + DD IP+ V +R++ RI+ VG P+ GV ++K+L
Sbjct: 61 RTS--------EKPGRPDPDPE---DDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVL 120
Query: 121 EAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVE 180
E + ++ +W VP+W+P+LT +TFG+S +GIAYG+LST+LDP K +LFG EA++NWVE
Sbjct: 121 EVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVE 167
Query: 181 MWKEE 182
MWKE+
Sbjct: 181 MWKED 167
BLAST of CmoCh18G013030 vs. ExPASy Swiss-Prot
Match:
O49668 (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)
HSP 1 Score: 89.7 bits (221), Expect = 3.7e-17
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 0
Query: 21 KQRSRIDDSTTTKNLRIFTRTSRGQIQLNA-KGFTGSPATAKDRETAVKKPSGQNNSRDG 80
K +S++ S T N +R + +N+ KGF P K +++ KP Q++ D
Sbjct: 37 KTKSQVPKSITCINRLEISRIAPLHATMNSPKGF--GPPPKKTKKSKKPKPGNQSDEDDD 96
Query: 81 GGDDDE-----------IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHVP 140
D+D+ IPE V R+I+R+ VG+P+ G+ + VP
Sbjct: 97 DEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVP 156
Query: 141 IWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
W+PF+ F+ FG + G++YG +S+S DP +EG+L GW+EA+KNW W+
Sbjct: 157 TWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQ 205
BLAST of CmoCh18G013030 vs. ExPASy TrEMBL
Match:
A0A6J1FZC0 (uncharacterized protein PAM68-like OS=Cucurbita moschata OX=3662 GN=LOC111449293 PE=4 SV=1)
HSP 1 Score: 382.9 bits (982), Expect = 7.9e-103
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA
Sbjct: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
Query: 61 KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH
Sbjct: 61 KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
Query: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE
Sbjct: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
Query: 181 EDEANRGGN 190
EDEANRGGN
Sbjct: 181 EDEANRGGN 189
BLAST of CmoCh18G013030 vs. ExPASy TrEMBL
Match:
A0A6J1HYL3 (uncharacterized protein PAM68-like OS=Cucurbita maxima OX=3661 GN=LOC111467790 PE=4 SV=1)
HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0
Query: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
MKALVCSFRHAL LSKPPPWKQRSRID+STTTKNLR+FT TSRGQIQLNAKGFTGSPATA
Sbjct: 1 MKALVCSFRHALDLSKPPPWKQRSRIDNSTTTKNLRVFTGTSRGQIQLNAKGFTGSPATA 60
Query: 61 KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
KDRETAVKK S QNNSRD GGDDDEIPEAVAKRIITRILAFVG+PMAFGVTLVKILEAVH
Sbjct: 61 KDRETAVKKLSDQNNSRD-GGDDDEIPEAVAKRIITRILAFVGIPMAFGVTLVKILEAVH 120
Query: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE
Sbjct: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
Query: 181 EDEANRGGN 190
EDEANRGG+
Sbjct: 181 EDEANRGGD 188
BLAST of CmoCh18G013030 vs. ExPASy TrEMBL
Match:
A0A6J1CGP3 (uncharacterized protein PAM68-like OS=Momordica charantia OX=3673 GN=LOC111011500 PE=4 SV=1)
HSP 1 Score: 287.0 bits (733), Expect = 5.9e-74
Identity = 141/186 (75.81%), Postives = 161/186 (86.56%), Query Frame = 0
Query: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPATA 60
MKAL+CS+R ALHLS+PPPWK RSRI+DST TKNL +R +RG +++NAKGFTG+PATA
Sbjct: 1 MKALLCSYRQALHLSEPPPWKPRSRINDSTITKNLTNLSRIARGDVRVNAKGFTGTPATA 60
Query: 61 KDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVH 120
K+RE A +K SGQNNS DDDEI EAV+ RIITRILAFVGVPMAFGV L+KI E +
Sbjct: 61 KEREAAARKISGQNNS--SNDDDDEISEAVSNRIITRILAFVGVPMAFGVALLKIFETIK 120
Query: 121 EQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWKE 180
EQK+W VPIWLPFLT FLTFGAST+GIAYGTLS SLDPEKEG+LFGW+EAQKNWVEMWKE
Sbjct: 121 EQKVWDVPIWLPFLTTFLTFGASTIGIAYGTLSASLDPEKEGSLFGWEEAQKNWVEMWKE 180
Query: 181 EDEANR 187
EDEA+R
Sbjct: 181 EDEASR 184
BLAST of CmoCh18G013030 vs. ExPASy TrEMBL
Match:
A0A5A7STB5 (Putative Sterol regulatory element-binding protein cleavage-activating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001970 PE=4 SV=1)
HSP 1 Score: 274.2 bits (700), Expect = 3.9e-70
Identity = 140/187 (74.87%), Postives = 157/187 (83.96%), Query Frame = 0
Query: 1 MKALVCSFRHALHLSKPPPWKQRS-RIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
MK+ CSFR AL L KPPP QR+ I+DST TKNL FT TSRGQ+Q+NAKGFTGSPAT
Sbjct: 1 MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60
Query: 61 AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
AK+RETA K SGQNN+ D DDDEIPEAV RIITRILAFVG+PMAFGVTL+KI +A+
Sbjct: 61 AKNRETAAKNLSGQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAI 120
Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMWK
Sbjct: 121 KEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGWEEAQKNWVEMWK 180
Query: 181 EEDEANR 187
EEDE +R
Sbjct: 181 EEDEVSR 184
BLAST of CmoCh18G013030 vs. ExPASy TrEMBL
Match:
A0A1S3AZ57 (uncharacterized protein PAM68-like OS=Cucumis melo OX=3656 GN=LOC103484134 PE=4 SV=1)
HSP 1 Score: 274.2 bits (700), Expect = 3.9e-70
Identity = 140/187 (74.87%), Postives = 157/187 (83.96%), Query Frame = 0
Query: 1 MKALVCSFRHALHLSKPPPWKQRS-RIDDSTTTKNLRIFTRTSRGQIQLNAKGFTGSPAT 60
MK+ CSFR AL L KPPP QR+ I+DST TKNL FT TSRGQ+Q+NAKGFTGSPAT
Sbjct: 1 MKSFGCSFRQALLLPKPPPRNQRTVIINDSTITKNLSNFTTTSRGQVQVNAKGFTGSPAT 60
Query: 61 AKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKILEAV 120
AK+RETA K SGQNN+ D DDDEIPEAV RIITRILAFVG+PMAFGVTL+KI +A+
Sbjct: 61 AKNRETAAKNLSGQNNNED---DDDEIPEAVYSRIITRILAFVGIPMAFGVTLLKIFQAI 120
Query: 121 HEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
EQ LW VPIW+PF T FLTFGASTMGIAYGTLSTSLDPEK+G++ GW+EAQKNWVEMWK
Sbjct: 121 KEQNLWDVPIWVPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSVMGWEEAQKNWVEMWK 180
Query: 181 EEDEANR 187
EEDE +R
Sbjct: 181 EEDEVSR 184
BLAST of CmoCh18G013030 vs. TAIR 10
Match:
AT5G52780.1 (Protein of unknown function (DUF3464) )
HSP 1 Score: 120.9 bits (302), Expect = 1.1e-27
Identity = 69/185 (37.30%), Postives = 106/185 (57.30%), Query Frame = 0
Query: 1 MKALVCSFRHALHLSKPPPWKQRSRIDDSTTTKNLRIFTRTSR----GQIQLNAKGFTGS 60
M+AL+CS R P SR T + N + ++ ++ KGF S
Sbjct: 1 MRALLCSHRLL-------PLSSLSRTTVKTKSHNPKTLYPNNKPRWESKLHAGPKGFQSS 60
Query: 61 PATAKDRETAVKKPSGQNNSRDGGGDDDEIPEAVAKRIITRILAFVGVPMAFGVTLVKIL 120
+ +KP + + DD IP+ V +R++ RI+ VG P+ GV ++K+L
Sbjct: 61 RTS--------EKPGRPDPDPE---DDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVL 120
Query: 121 EAVHEQKLWHVPIWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVE 180
E + ++ +W VP+W+P+LT +TFG+S +GIAYG+LST+LDP K +LFG EA++NWVE
Sbjct: 121 EVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVE 167
Query: 181 MWKEE 182
MWKE+
Sbjct: 181 MWKED 167
BLAST of CmoCh18G013030 vs. TAIR 10
Match:
AT4G19100.1 (Protein of unknown function (DUF3464) )
HSP 1 Score: 89.7 bits (221), Expect = 2.7e-18
Identity = 55/171 (32.16%), Postives = 89/171 (52.05%), Query Frame = 0
Query: 21 KQRSRIDDSTTTKNLRIFTRTSRGQIQLNA-KGFTGSPATAKDRETAVKKPSGQNNSRDG 80
K +S++ S T N +R + +N+ KGF P K +++ KP Q++ D
Sbjct: 37 KTKSQVPKSITCINRLEISRIAPLHATMNSPKGF--GPPPKKTKKSKKPKPGNQSDEDDD 96
Query: 81 GGDDDE-----------IPEAVAKRIITRILAFVGVPMAFGVTLVKILEAVHEQKLWHVP 140
D+D+ IPE V R+I+R+ VG+P+ G+ + VP
Sbjct: 97 DEDEDDDDEEDERERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVP 156
Query: 141 IWLPFLTIFLTFGASTMGIAYGTLSTSLDPEKEGTLFGWDEAQKNWVEMWK 180
W+PF+ F+ FG + G++YG +S+S DP +EG+L GW+EA+KNW W+
Sbjct: 157 TWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQ 205
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9LTD9 | 1.5e-26 | 37.30 | Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ... | [more] |
O49668 | 3.7e-17 | 32.16 | Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1FZC0 | 7.9e-103 | 100.00 | uncharacterized protein PAM68-like OS=Cucurbita moschata OX=3662 GN=LOC111449293... | [more] |
A0A6J1HYL3 | 1.6e-95 | 95.24 | uncharacterized protein PAM68-like OS=Cucurbita maxima OX=3661 GN=LOC111467790 P... | [more] |
A0A6J1CGP3 | 5.9e-74 | 75.81 | uncharacterized protein PAM68-like OS=Momordica charantia OX=3673 GN=LOC11101150... | [more] |
A0A5A7STB5 | 3.9e-70 | 74.87 | Putative Sterol regulatory element-binding protein cleavage-activating protein O... | [more] |
A0A1S3AZ57 | 3.9e-70 | 74.87 | uncharacterized protein PAM68-like OS=Cucumis melo OX=3656 GN=LOC103484134 PE=4 ... | [more] |
Match Name | E-value | Identity | Description | |
AT5G52780.1 | 1.1e-27 | 37.30 | Protein of unknown function (DUF3464) | [more] |
AT4G19100.1 | 2.7e-18 | 32.16 | Protein of unknown function (DUF3464) | [more] |