CmoCh18G012440 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G012440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Dihydrodipicolinate reductase-like protein CRR1 chloroplastic
Location	Cmo_Chr18: 12260590 .. 12262929 (+)
RNA-Seq Expression	CmoCh18G012440
Synteny	CmoCh18G012440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGGTAACCCCACACTCACCTGCAATAACTCTCATTGTTTTGTTCAACAACAACAATGGCGGCCCTGGGTCTCTTTTCTTTTTTAATGAAACCCCACAGTTTCATTTCTCTCCTCACTGTGTTTTTGCTGATCTGTACAAATGAAATTAGGTTAGGAACCTCTGGAACTTCATCTTTTGCCTTGACTGGCTTTAAGTCTTATAACTTCACTATTTTATTGCTAATTTGCAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGTAGCATCTTCATCTTTCTTCCCCATTTGGCAAACATCAAACTTTTTTTTTTCTTTTCTCTGATGGGCCCTTCTATCTCCTCTGCAAATATTCGAGACCCAAATCTTCATCTTTGCCTTGTTTCTTTTTTCAATTTAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGTGACTGCATTATCTCTGTGAGAAAGCAAGCATGGTGAGTACAGGGCGAGATATTTTAATTCAACCTGTTGAGGATTGTCGTTAGGAGGGAGCTCACCTTGGCTAACTAAGGGGATGATTATGGGTTTATAAGTAAGGAATACATCTCCGATGGTATGAGGCCTTTTAGGAAAAGAGCTTATGCTTAAAGTGGACAATATCATACCATCATGGAGAGTTGTGATTCCTTATCTGGTATCAAAGTTATGCCCTTAACTTAGTCATGTGAATAGAATCCTTAAGTGTCGAATAAAAAAGTTGTGAGTCTCGAAAGTATAGTCAAATATGACTCAAGTGTCGAACAAAATGTGTACTTTGTTCGAGGACTCCAAAGAAGAAGTCAAGCTTAGATTAAGGGGAGGGAGTTCGAGGACTCCATAAGTCTCAAGGAAGGCTCTATAGTGTATTTTGTTAAAGGGAAGGAGTCTCACATTGGCTTATATTAAGGAGGTGATCATGAGTTTATAAGTAAGAAATACATCTCCGTTGGTATGAGGCCTTTCGGAGAAACCAAAAGCAAAACCATGAAAACTTATGTTCCAAGTGGATAATATCATACCATTGTGGAGGGTCGTGGTTCTTAACAAAACTCTCTCGTGTGTGAATGCTTTAATGGATTTGGTCACAGGAGGGTTGGCTTGTCAACCCAACTCAGTCCATTGGTTCTATCCTTCTCCAGCGAGTAGCAATTTCAGCTTCCTCCCATTACTGCAACGTTGAGACTGTGGAATCCAGATAGAATGCACAGGTTAATCAAATCATATCAACAACTAATTTGCTATTTCAGTTTCAAAGGAAAAGAAAATCATAAAGGAGAAGAAAAATAGGCAATACTTTTCCATTTTCATTGTGTTCGTACAAGGCTGTGACCTTTGCCATTAAACTATAGATGAATCAACATGCACTCTTCTCTCTCACCTACATTAGCTTAGTTTAACATCTGAATCAAGTACATGGATTCAAGTCTTTCAAATCTCCATTAGTGTATTATAAAATACCATACGAAGCTGTACTAAAAAAAATAAAAAAAATACCATAGGACGTTAAGAGAGAGAGAGAGAAAGAGAGAAGTAAATGTAGCAGATGGGCATTAAATACTGACTTTTTTGGTGACAGGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGTAAGCTGAATTCATGAGCAGTCTCTTGCCTCATTTAATTTGATGTATCAGTCATTAAGAACTGAGACATGATGTGAAATAAAATATATATCATAATGTACCTGCTTTTATTCTCTTTACTTTCACCTCGTATAGCTATCTTATTCATGTGCTTCACTTAAAGGAATTCAGCCAATAAGGATCAAACTATGTCTACAAAATTTGAATATAACTTGTAAAGAGATTATGAAAATTCACCGTGTTGATGACTAAGACATCAAACTCAGAAGCCCATTTAGAAAAAGACTCGCTTGCTTATTTCTCCTTTTTTCCTGCAAGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG

mRNA sequence

ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG

Coding sequence (CDS)

ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG

Protein sequence

MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA

Homology

[Close]

BLAST of CmoCh18G012440 vs. ExPASy Swiss-Prot
Match: Q9FJ82 (Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPB3 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-11
Identity = 53/136 (38.97%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------- 134
           L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +T             
Sbjct: 96  LGSISQGKEVGVVIDFTDPSTVYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATM 155

Query: 135 ---------------------------------------DVPSSDASQIANNLSNLGQNC 158
                                                  D+PS +A QIANN+SNLGQ  
Sbjct: 156 GCLVAPTLSIGSILLQQAVIMASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIY 215

[Close]

BLAST of CmoCh18G012440 vs. ExPASy TrEMBL
Match: A0A6J1G0N1 (uncharacterized protein LOC111449605 OS=Cucurbita moschata OX=3662 GN=LOC111449605 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.4e-73
Identity = 147/166 (88.55%), Postives = 147/166 (88.55%), Query Frame = 0


Query: 1   MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCI 60
           MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCI
Sbjct: 1   MTQKQQPNSKNIVILSLSHDLEFAITNGLIFFGKLEKKQSLETNNNGGPGLACSFPLQCI 60

Query: 61  KNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 120
           KNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQ                   
Sbjct: 61  KNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQ------------------- 120

Query: 121 DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA 167
           DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA
Sbjct: 121 DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA 147

[Close]

BLAST of CmoCh18G012440 vs. ExPASy TrEMBL
Match: A0A6J1HTE5 (uncharacterized protein LOC111467650 OS=Cucurbita maxima OX=3661 GN=LOC111467650 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 6.4e-40
Identity = 92/118 (77.97%), Postives = 95/118 (80.51%), Query Frame = 0


Query: 51  LACSFPLQCIK--NSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMR 110
           LACSFPLQC+K    SNPQSHLEFASL+SNIKSKETGVVDFT+PSKVYENVKQ       
Sbjct: 4   LACSFPLQCLKTQRKSNPQSHLEFASLRSNIKSKETGVVDFTEPSKVYENVKQ------- 63

Query: 111 SEVYVPGIKVDTDVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA 167
                       DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA
Sbjct: 64  ------------DVPSSDASQIANNLSNLGQNCNREDISTGDWQRDKMLEKIEFECTA 102

[Close]

BLAST of CmoCh18G012440 vs. ExPASy TrEMBL
Match: A0A5A7SWS8 (Dihydrodipicolinate reductase-like protein CRR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00510 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 62/136 (45.59%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 75  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------- 134
           L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT             
Sbjct: 91  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 150

Query: 135 ---------------------------------------DVPSSDASQIANNLSNLGQNC 158
                                                  D+PSSDA+QIANNLSNLGQ  
Sbjct: 151 GCLVAPTLSIGSILLQQAAISASFHYSNVEIVESREHAQDLPSSDAAQIANNLSNLGQIY 210

[Close]

BLAST of CmoCh18G012440 vs. ExPASy TrEMBL
Match: A0A5D3DF17 (Dihydrodipicolinate reductase-like protein CRR1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00370 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 62/136 (45.59%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 75  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------- 134
           L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT             
Sbjct: 91  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 150

Query: 135 ---------------------------------------DVPSSDASQIANNLSNLGQNC 158
                                                  D+PSSDA+QIANNLSNLGQ  
Sbjct: 151 GCLVAPTLSIGSILLQQAAISASFHYSNVEIVESREHAQDLPSSDAAQIANNLSNLGQIY 210

[Close]

BLAST of CmoCh18G012440 vs. ExPASy TrEMBL
Match: A0A0A0L5T6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180330 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 62/136 (45.59%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 75  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------- 134
           L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT             
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 157

Query: 135 ---------------------------------------DVPSSDASQIANNLSNLGQNC 158
                                                  D+PSSDA+QIANNLSNLGQ  
Sbjct: 158 GCLVAPTLSIGSILLQQAAISASFHYSNIEIVESTAHAQDLPSSDAAQIANNLSNLGQIY 217

[Close]

BLAST of CmoCh18G012440 vs. TAIR 10
Match: AT5G52100.1 (Dihydrodipicolinate reductase, bacterial/plant )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 53/136 (38.97%), Postives = 63/136 (46.32%), Query Frame = 0


Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------- 134
           L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +T             
Sbjct: 96  LGSISQGKEVGVVIDFTDPSTVYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATM 155

Query: 135 ---------------------------------------DVPSSDASQIANNLSNLGQNC 158
                                                  D+PS +A QIANN+SNLGQ  
Sbjct: 156 GCLVAPTLSIGSILLQQAVIMASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIY 215

The following BLAST results are available for this feature:

BLAST of CmoCh18G012440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ82	1.6e-11	38.97	Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis th...	[more]

BLAST of CmoCh18G012440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G0N1	4.4e-73	88.55	uncharacterized protein LOC111449605 OS=Cucurbita moschata OX=3662 GN=LOC1114496...	[more]
A0A6J1HTE5	6.4e-40	77.97	uncharacterized protein LOC111467650 OS=Cucurbita maxima OX=3661 GN=LOC111467650...	[more]
A0A5A7SWS8	1.6e-14	45.59	Dihydrodipicolinate reductase-like protein CRR1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DF17	1.6e-14	45.59	Dihydrodipicolinate reductase-like protein CRR1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0L5T6	1.6e-14	45.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180330 PE=3 SV=1	[more]

BLAST of CmoCh18G012440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52100.1	1.1e-12	38.97	Dihydrodipicolinate reductase, bacterial/plant	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR20836:SF6	DIHYDRODIPICOLINATE REDUCTASE-LIKE PROTEIN CRR1, CHLOROPLASTIC	coord: 120..157
None	No IPR available	PANTHER	PTHR20836:SF6	DIHYDRODIPICOLINATE REDUCTASE-LIKE PROTEIN CRR1, CHLOROPLASTIC	coord: 76..120
IPR023940	Dihydrodipicolinate reductase	PANTHER	PTHR20836	DIHYDRODIPICOLINATE REDUCTASE	coord: 76..120
IPR023940	Dihydrodipicolinate reductase	PANTHER	PTHR20836	DIHYDRODIPICOLINATE REDUCTASE	coord: 120..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G012440.1	CmoCh18G012440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
molecular_function	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase