CmoCh18G011720 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G011720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING/FYVE/PHD zinc finger superfamily protein
Location	Cmo_Chr18: 11837026 .. 11839428 (+)
RNA-Seq Expression	CmoCh18G011720
Synteny	CmoCh18G011720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTGGACGATAGGAAGAACCCGGACCCGGCTACTTACGCGCCAATATTACAAGTCCCGTTATCGGATTGTATTTTTCGTTACATCTATATACCTTAGAAGATTTGTTGTTCTTGGCGACGAAGGTCAATTCCCGTTTTGGACGGAACGAAACCAGCCCGATTTCATTGCATTACCACATGTATGTTCTTGGATTATGTCCCAATTTGATCCAGCCCACTTCCATTTGATTAAGTCCCTCCTCATTCTTCCTCCGCTCTTCAGCACTGCTCCGGAACCCCTCCGGTCCGCTGCCCTCTCAGCGCGATCGCTGGGGATTCTAGCTTTCTCATCATTTGCTCCGATTACTACTAGTACGCCTCTTTTGTTTTTAATTCCTGTAGTGTTTAATTATTTGCCACTGTGAGCCAATGAGGTTTGTTTTTGGTGACTTAGGTGTTTGATTTCTGGTTGCGGAGAATGAGCGATCATCTCGCTTTGTATGTGGATCGATTAATTCGGCCGGCGCCCGTTGATTCGGAGCTCAGCCCGATTGAGGTTGTTCCTCTCTTGCCGGTCGCAGGGAACTTGGACGGCGATTCAGTGGGCTTGTCTAATTCGACGTCCAATTCCAATGCTGATGAGAGGGAAGAAAAGAATGAGGGTTTGGATGGAGAGGATGATTCATTGATTCAGACAGCGGAGTGTCGCATTTGTCAGGATGAGGACGTGATTAAGAAGCTCGAAACGCCATGCGCCTGTAGTGGAAGTCTTAAGGTATAAATGATTGATCCCTCGTTTTAGAAATGAAGCATTATAAAACTTTATAGAACCTCTGCTTCGTTCTATATTCAAATAGTTTGGATTTAGGTCTCGTTGCAAATCGCTAATGGTATATACCTTATGGGATTAAGAATAAATAATGGCTGGCTTAGTCGATGGTGATGTGAAAATTTACACGTGTAACAGCCCAAATTCACCGCTAGCAGATATTGCTCTCTTTGGGTTTTCCCTTTCGGGCTTCCTGCTTTTACACTCTTATAAAGAATGCTTCGTTCCCCCTCCAATCGATGTATGATCTCACAATCCACCCCCTCCCGGACCTAGTGTCCTCACTGGCATTCGTTCTCCTCTCCAATCGTTGTGGGATCTCACATTGAAATGTATATGCGAAAGTGAACGCCATAATTGTGAGGAATATTTTTCTTAGGAATGTTCTACGGTATGCTATAAGGCCGTTTACATTTCTCTTGTTTCGGTTATCTCAAATGCATCTAATGAGGCATTTACTGCTTGTGTTGCATTATGATTTAGATGAGATGTTAACAACGATTACTTTGCCAGTATGCTCATCGGAAGTGTATACAGCATTGGTGCAATGAAAAAGGGGATATCATTTGTGAGATTTGTCATCAGGTATGTTTACATTCTTGATTTTACTTGGTTATATCAAGTCCTTGGGATCATATATGCATTTGATGTCGATACTATACTAGAGGAGGTACGATTGCGCCCCCTTTTTGGGATAAGGGCAGAATTCTTTGACAAACTTGTTGCTTTGCTGTTGTGAGGGGTGTTTGTATTCATATTTTTCAATGAAAGTGGTTTTTTTTTTGTATATATATACACACGTGCACTCGACATGTTATTTGGCCGCATGGTACTCATTCAATACATCACGGATGAGCCATGACACAATCCGGTGAAAGCATCTTGGATAGAATAAGCTGAAAGAAAACATTTCTTATGTAATGATATTTCCATTGAAAATGAAGTCAAGAAATGTTACAGTTTGACTATTAAAAGATTAAAAAATTAAGATGATGAGCGTTAACGCATATATATGGAACAATTCAACTACTTTGAATGTTATGGTTTTTTTAGAGGTTCAGCTTATCTGATTTTATACTCCTACATATTATGTACAGCCTTACCAGCCTGATTATACAGCTCCACCACCTCCCCCTCGAGTTGAAGAAACGTCTATTGATATTGGGTACCTTACATGCTTCAAATTTCCTTGCTTTAGAAATTTCCAGGACTATCTTTTGAAATATTTTTGTTGAAAAGCTCTCTGATTTTTTTGCATTTTCGATATTGAGCTAAACGTGTCGTATCTTTGTTTGCGTTCTTGCTTCTGCAGGGGAGGGTGGACCATTACTGGCACACCTTTGAGTTTACACGATCCTCGCCTTTTGGCTTTTGCAGAGACTGAGCGTAATTTATTGGAAGTCGAGTATGATGAATATGCTGCTTCTGATGCCGGTGGAGCAGCATTTTGTCGAGCAGCTGCTCTTATTGTAAGTTTACTGTTTGATATCACATGTAAGAAATCTCGATAGTATAATCACAAATCTTATTGTTATCATTCACTTCTCATAAATTGATGTCAATATAGATACCCTGCAGTCTCAATAACTAG

mRNA sequence

ATGGCGTGGACGATAGGAAGAACCCGGACCCGGCTACTTACGCGCCAATATTACAAGTCCCGTTATCGGATTGTATTTTTCGTTACATCTATATACCTTAGAAGATTTGTTGTTCTTGGCGACGAAGGTCAATTCCCGTTTTGGACGGAACGAAACCAGCCCGATTTCATTGCATTACCACATCTTTCTCATCATTTGCTCCGATTACTACTAGTGTTTGATTTCTGGTTGCGGAGAATGAGCGATCATCTCGCTTTGTATGTGGATCGATTAATTCGGCCGGCGCCCGTTGATTCGGAGCTCAGCCCGATTGAGGTTGTTCCTCTCTTGCCGGTCGCAGGGAACTTGGACGGCGATTCAGTGGGCTTGTCTAATTCGACGTCCAATTCCAATGCTGATGAGAGGGAAGAAAAGAATGAGGGTTTGGATGGAGAGGATGATTCATTGATTCAGACAGCGGAGTGTCGCATTTGTCAGGATGAGGACGTGATTAAGAAGCTCGAAACGCCATGCGCCTGTAGTGGAAGTCTTAAGTATGCTCATCGGAAGTGTATACAGCATTGGTGCAATGAAAAAGGGGATATCATTTGTGAGATTTGTCATCAGCCTTACCAGCCTGATTATACAGCTCCACCACCTCCCCCTCGAGTTGAAGAAACGTCTATTGATATTGGGGGAGGGTGGACCATTACTGGCACACCTTTGAGTTTACACGATCCTCGCCTTTTGGCTTTTGCAGAGACTGAGCGTAATTTATTGGAAGTCGAGTATGATGAATATGCTGCTTCTGATGCCGGTGGAGCAGCATTTTGTCGAGCAGCTGCTCTTATTATACCCTGCAGTCTCAATAACTAG

Coding sequence (CDS)

ATGGCGTGGACGATAGGAAGAACCCGGACCCGGCTACTTACGCGCCAATATTACAAGTCCCGTTATCGGATTGTATTTTTCGTTACATCTATATACCTTAGAAGATTTGTTGTTCTTGGCGACGAAGGTCAATTCCCGTTTTGGACGGAACGAAACCAGCCCGATTTCATTGCATTACCACATCTTTCTCATCATTTGCTCCGATTACTACTAGTGTTTGATTTCTGGTTGCGGAGAATGAGCGATCATCTCGCTTTGTATGTGGATCGATTAATTCGGCCGGCGCCCGTTGATTCGGAGCTCAGCCCGATTGAGGTTGTTCCTCTCTTGCCGGTCGCAGGGAACTTGGACGGCGATTCAGTGGGCTTGTCTAATTCGACGTCCAATTCCAATGCTGATGAGAGGGAAGAAAAGAATGAGGGTTTGGATGGAGAGGATGATTCATTGATTCAGACAGCGGAGTGTCGCATTTGTCAGGATGAGGACGTGATTAAGAAGCTCGAAACGCCATGCGCCTGTAGTGGAAGTCTTAAGTATGCTCATCGGAAGTGTATACAGCATTGGTGCAATGAAAAAGGGGATATCATTTGTGAGATTTGTCATCAGCCTTACCAGCCTGATTATACAGCTCCACCACCTCCCCCTCGAGTTGAAGAAACGTCTATTGATATTGGGGGAGGGTGGACCATTACTGGCACACCTTTGAGTTTACACGATCCTCGCCTTTTGGCTTTTGCAGAGACTGAGCGTAATTTATTGGAAGTCGAGTATGATGAATATGCTGCTTCTGATGCCGGTGGAGCAGCATTTTGTCGAGCAGCTGCTCTTATTATACCCTGCAGTCTCAATAACTAG

Protein sequence

MAWTIGRTRTRLLTRQYYKSRYRIVFFVTSIYLRRFVVLGDEGQFPFWTERNQPDFIALPHLSHHLLRLLLVFDFWLRRMSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKNEGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAASDAGGAAFCRAAALIIPCSLNN

Homology

[Close]

BLAST of CmoCh18G011720 vs. ExPASy Swiss-Prot
Match: Q80TE3 (E3 ubiquitin-protein ligase MARCHF4 OS=Mus musculus OX=10090 GN=Marchf4 PE=2 SV=3)

HSP 1 Score: 61.2 bits (147), Expect = 2.1e-08
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 0


Query: 97  VDSELSPIEVVPLLPVAG--NLDGDSVG-----LSNSTSNSNADEREEKNEGLDGEDDSL 156
           V  E  P+   P LP +G  + DG + G     LS+++S+    E+ E    L    DS 
Sbjct: 97  VGRETPPLPPPPPLPPSGDDDWDGPATGPPASLLSSASSDEFCKEKTEDCYSLGSSLDSG 156

Query: 157 IQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQPY 205
           ++T  CRIC       +L +PC C GS+K  H+ C+  W +E+G   CE+C+  Y
Sbjct: 157 MRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKY 211

[Close]

BLAST of CmoCh18G011720 vs. ExPASy Swiss-Prot
Match: Q86YJ5 (E3 ubiquitin-protein ligase MARCHF9 OS=Homo sapiens OX=9606 GN=MARCHF9 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-07
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 147 DSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQPYQ 206
           DS ++T +CRIC       +L +PC C GS++  H+ C+  W +E+G   CE+C+  YQ
Sbjct: 102 DSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160

[Close]

BLAST of CmoCh18G011720 vs. ExPASy Swiss-Prot
Match: Q3TZ87 (E3 ubiquitin-protein ligase MARCHF9 OS=Mus musculus OX=10090 GN=Marchf9 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.4e-07
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 147 DSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQPYQ 206
           DS ++T +CRIC       +L +PC C GS++  H+ C+  W +E+G   CE+C+  YQ
Sbjct: 102 DSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160

[Close]

BLAST of CmoCh18G011720 vs. ExPASy Swiss-Prot
Match: Q0P496 (E3 ubiquitin-protein ligase MARCHF4 OS=Danio rerio OX=7955 GN=marchf4 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.1e-07
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 126 STSNSNADEREEKNEGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCI 185
           S+S   + E+ ++   L+   DS ++T  CRIC       +L +PC CSGS++  H  C+
Sbjct: 114 SSSEDCSKEKLDERLSLNSCTDSGVRTPLCRICFQGPEQGELLSPCRCSGSVRCTHEPCL 173

Query: 186 QHWCNEKGDIICEICHQPYQ 206
             W +E+G   CE+C+  YQ
Sbjct: 174 IKWISERGSWSCELCYYKYQ 193

[Close]

BLAST of CmoCh18G011720 vs. ExPASy Swiss-Prot
Match: Q9P2E8 (E3 ubiquitin-protein ligase MARCHF4 OS=Homo sapiens OX=9606 GN=MARCHF4 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 4.0e-07
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 123 LSNSTSNSNADEREEKNEGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHR 182
           LS+++S+    E+ E    L    DS ++T  CRIC       +L +PC C GS+K  H+
Sbjct: 131 LSSASSDDFCKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQ 190

Query: 183 KCIQHWCNEKGDIICEICHQPY 205
            C+  W +E+G   CE+C+  Y
Sbjct: 191 PCLIKWISERGCWSCELCYYKY 212

[Close]

BLAST of CmoCh18G011720 vs. ExPASy TrEMBL
Match: A0A6J1G198 (uncharacterized protein LOC111449748 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449748 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.6e-110
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 80  MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 139
           MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN
Sbjct: 1   MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 60

Query: 140 EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 199
           EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI
Sbjct: 61  EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 120

Query: 200 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 259
           CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE
Sbjct: 121 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 180

Query: 260 YAASDAGGAAFCRAAALII 279
           YAASDAGGAAFCRAAALI+
Sbjct: 181 YAASDAGGAAFCRAAALIL 199

[Close]

BLAST of CmoCh18G011720 vs. ExPASy TrEMBL
Match: A0A6J1G191 (uncharacterized protein LOC111449748 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449748 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.6e-110
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 80  MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 139
           MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN
Sbjct: 1   MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 60

Query: 140 EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 199
           EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI
Sbjct: 61  EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 120

Query: 200 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 259
           CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE
Sbjct: 121 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 180

Query: 260 YAASDAGGAAFCRAAALII 279
           YAASDAGGAAFCRAAALI+
Sbjct: 181 YAASDAGGAAFCRAAALIL 199

[Close]

BLAST of CmoCh18G011720 vs. ExPASy TrEMBL
Match: A0A6J1G173 (uncharacterized protein LOC111449748 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111449748 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.6e-110
Identity = 198/199 (99.50%), Postives = 199/199 (100.00%), Query Frame = 0


Query: 80  MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 139
           MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN
Sbjct: 1   MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 60

Query: 140 EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 199
           EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI
Sbjct: 61  EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 120

Query: 200 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 259
           CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE
Sbjct: 121 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 180

Query: 260 YAASDAGGAAFCRAAALII 279
           YAASDAGGAAFCRAAALI+
Sbjct: 181 YAASDAGGAAFCRAAALIL 199

[Close]

BLAST of CmoCh18G011720 vs. ExPASy TrEMBL
Match: A0A6J1HYJ5 (uncharacterized protein LOC111467420 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467420 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.5e-109
Identity = 195/199 (97.99%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 80  MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 139
           MSDHLALYVDRLIRP PVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN
Sbjct: 1   MSDHLALYVDRLIRPVPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 60

Query: 140 EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 199
           EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI
Sbjct: 61  EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 120

Query: 200 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 259
           CHQPYQPDYTAPPPPPR+EETSIDIGG WTITGTPLSLHDPRLLAFAETERNLLEVEYDE
Sbjct: 121 CHQPYQPDYTAPPPPPRIEETSIDIGGRWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 180

Query: 260 YAASDAGGAAFCRAAALII 279
           YAASDAGGAAFCRAAALI+
Sbjct: 181 YAASDAGGAAFCRAAALIL 199

[Close]

BLAST of CmoCh18G011720 vs. ExPASy TrEMBL
Match: A0A6J1HW61 (uncharacterized protein LOC111467420 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467420 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.5e-109
Identity = 195/199 (97.99%), Postives = 197/199 (98.99%), Query Frame = 0


Query: 80  MSDHLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 139
           MSDHLALYVDRLIRP PVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN
Sbjct: 1   MSDHLALYVDRLIRPVPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKN 60

Query: 140 EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 199
           EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI
Sbjct: 61  EGLDGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEI 120

Query: 200 CHQPYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 259
           CHQPYQPDYTAPPPPPR+EETSIDIGG WTITGTPLSLHDPRLLAFAETERNLLEVEYDE
Sbjct: 121 CHQPYQPDYTAPPPPPRIEETSIDIGGRWTITGTPLSLHDPRLLAFAETERNLLEVEYDE 180

Query: 260 YAASDAGGAAFCRAAALII 279
           YAASDAGGAAFCRAAALI+
Sbjct: 181 YAASDAGGAAFCRAAALIL 199

[Close]

BLAST of CmoCh18G011720 vs. TAIR 10
Match: AT1G14260.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-56
Identity = 112/196 (57.14%), Postives = 133/196 (67.86%), Query Frame = 0


Query: 83  HLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKNEGL 142
           H  +YV+ L+RP   ++E S     P        DGD+                 +NE  
Sbjct: 5   HTVVYVNGLVRPVLAEAEYSMRTESPADNAIDIYDGDTT----------------ENE-- 64

Query: 143 DGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQ 202
             E+DSLI +AECRICQDE  IK LE+PCAC+GSLKYAHRKC+Q WCNEKG+ ICEICHQ
Sbjct: 65  --EEDSLISSAECRICQDECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQ 124

Query: 203 PYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAA 262
           PYQ  YT+PPPPP+ EET+IDIGGGW I+G  L L DPRLLA AE ER +LE EYD+Y A
Sbjct: 125 PYQAGYTSPPPPPQSEETTIDIGGGWRISG--LDLDDPRLLAIAEAERQILESEYDDYTA 178

Query: 263 SDAGGAAFCRAAALII 279
           SD  GAAF R+AALI+
Sbjct: 185 SDTSGAAFFRSAALIL 178

[Close]

BLAST of CmoCh18G011720 vs. TAIR 10
Match: AT1G14260.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-56
Identity = 112/196 (57.14%), Postives = 133/196 (67.86%), Query Frame = 0


Query: 83  HLALYVDRLIRPAPVDSELSPIEVVPLLPVAGNLDGDSVGLSNSTSNSNADEREEKNEGL 142
           H  +YV+ L+RP   ++E S     P        DGD+                 +NE  
Sbjct: 5   HTVVYVNGLVRPVLAEAEYSMRTESPADNAIDIYDGDTT----------------ENE-- 64

Query: 143 DGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQ 202
             E+DSLI +AECRICQDE  IK LE+PCAC+GSLKYAHRKC+Q WCNEKG+ ICEICHQ
Sbjct: 65  --EEDSLISSAECRICQDECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQ 124

Query: 203 PYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAA 262
           PYQ  YT+PPPPP+ EET+IDIGGGW I+G  L L DPRLLA AE ER +LE EYD+Y A
Sbjct: 125 PYQAGYTSPPPPPQSEETTIDIGGGWRISG--LDLDDPRLLAIAEAERQILESEYDDYTA 178

Query: 263 SDAGGAAFCRAAALII 279
           SD  GAAF R+AALI+
Sbjct: 185 SDTSGAAFFRSAALIL 178

[Close]

BLAST of CmoCh18G011720 vs. TAIR 10
Match: AT2G02960.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-55
Identity = 98/136 (72.06%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 143 DGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQ 202
           D E++ LI + ECRIC DE  ++ LE+PCACSGSLKYAHRKC+Q WCNEKG+IICEICHQ
Sbjct: 31  DDENEPLIVSGECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQ 90

Query: 203 PYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAA 262
           PYQP YTAPPPP + EET+IDIGGGWTI+G  L +HDPRLLA AE ER  LE EY EY A
Sbjct: 91  PYQPGYTAPPPPLQPEETTIDIGGGWTISG--LDVHDPRLLAIAEAERRYLESEYVEYTA 150

Query: 263 SDAGGAAFCRAAALII 279
           S A GAAFCR+AALI+
Sbjct: 151 SSASGAAFCRSAALIL 164

[Close]

BLAST of CmoCh18G011720 vs. TAIR 10
Match: AT2G02960.4 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-55
Identity = 98/136 (72.06%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 143 DGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQ 202
           D E++ LI + ECRIC DE  ++ LE+PCACSGSLKYAHRKC+Q WCNEKG+IICEICHQ
Sbjct: 31  DDENEPLIVSGECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQ 90

Query: 203 PYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAA 262
           PYQP YTAPPPP + EET+IDIGGGWTI+G  L +HDPRLLA AE ER  LE EY EY A
Sbjct: 91  PYQPGYTAPPPPLQPEETTIDIGGGWTISG--LDVHDPRLLAIAEAERRYLESEYVEYTA 150

Query: 263 SDAGGAAFCRAAALII 279
           S A GAAFCR+AALI+
Sbjct: 151 SSASGAAFCRSAALIL 164

[Close]

BLAST of CmoCh18G011720 vs. TAIR 10
Match: AT2G02960.5 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 3.1e-55
Identity = 98/136 (72.06%), Postives = 112/136 (82.35%), Query Frame = 0


Query: 143 DGEDDSLIQTAECRICQDEDVIKKLETPCACSGSLKYAHRKCIQHWCNEKGDIICEICHQ 202
           D E++ LI + ECRIC DE  ++ LE+PCACSGSLKYAHRKC+Q WCNEKG+IICEICHQ
Sbjct: 31  DDENEPLIVSGECRICSDESPVENLESPCACSGSLKYAHRKCVQRWCNEKGNIICEICHQ 90

Query: 203 PYQPDYTAPPPPPRVEETSIDIGGGWTITGTPLSLHDPRLLAFAETERNLLEVEYDEYAA 262
           PYQP YTAPPPP + EET+IDIGGGWTI+G  L +HDPRLLA AE ER  LE EY EY A
Sbjct: 91  PYQPGYTAPPPPLQPEETTIDIGGGWTISG--LDVHDPRLLAIAEAERRYLESEYVEYTA 150

Query: 263 SDAGGAAFCRAAALII 279
           S A GAAFCR+AALI+
Sbjct: 151 SSASGAAFCRSAALIL 164

The following BLAST results are available for this feature:

BLAST of CmoCh18G011720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q80TE3	2.1e-08	33.91	E3 ubiquitin-protein ligase MARCHF4 OS=Mus musculus OX=10090 GN=Marchf4 PE=2 SV=...	[more]
Q86YJ5	2.4e-07	38.98	E3 ubiquitin-protein ligase MARCHF9 OS=Homo sapiens OX=9606 GN=MARCHF9 PE=1 SV=2	[more]
Q3TZ87	2.4e-07	38.98	E3 ubiquitin-protein ligase MARCHF9 OS=Mus musculus OX=10090 GN=Marchf9 PE=2 SV=...	[more]
Q0P496	3.1e-07	35.00	E3 ubiquitin-protein ligase MARCHF4 OS=Danio rerio OX=7955 GN=marchf4 PE=2 SV=1	[more]
Q9P2E8	4.0e-07	35.37	E3 ubiquitin-protein ligase MARCHF4 OS=Homo sapiens OX=9606 GN=MARCHF4 PE=2 SV=2	[more]

BLAST of CmoCh18G011720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G198	2.6e-110	99.50	uncharacterized protein LOC111449748 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G191	2.6e-110	99.50	uncharacterized protein LOC111449748 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G173	2.6e-110	99.50	uncharacterized protein LOC111449748 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HYJ5	8.5e-109	97.99	uncharacterized protein LOC111467420 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HW61	8.5e-109	97.99	uncharacterized protein LOC111467420 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmoCh18G011720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14260.1	2.8e-56	57.14	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT1G14260.2	2.8e-56	57.14	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G02960.2	3.1e-55	72.06	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G02960.4	3.1e-55	72.06	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G02960.5	3.1e-55	72.06	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 154..201 e-value: 7.5E-19 score: 78.6
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 155..200 e-value: 2.7E-12 score: 46.6
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 147..207 score: 22.635237
IPR022143	Protein of unknown function DUF3675	PFAM	PF12428	DUF3675	coord: 206..278 e-value: 7.8E-17 score: 61.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 142..211 e-value: 3.4E-19 score: 70.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..145
None	No IPR available	PANTHER	PTHR23012:SF181	E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED	coord: 80..278
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 155..201 e-value: 9.52452E-19 score: 75.8268
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 152..205
IPR033275	E3 ubiquitin-protein ligase MARCH-like	PANTHER	PTHR23012	RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING	coord: 80..278

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G011720.1	CmoCh18G011720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding