CmoCh18G011170 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G011170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr18: 11555971 .. 11556198 (+)
RNA-Seq ExpressionCmoCh18G011170
SyntenyCmoCh18G011170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGGCGAACCGGAGAGCGGAGGATCGAAGGCGGCGAAGATAGTCGGGGCGGTGGTGGGGTTCGCCACTTTCATTGGGTGCGTGGCGAGCGTGTTGTCCGCCGGCGCTGAAGCCATGGGCGACCCGAAGATGATGAAGGCTCCGGGAAGACGGGGGCAGATGATCGAGAGGGGTAAGTTTGAGGAGAACCCCTCTGGGTACTTCAGAGACCTGCGCAATAAATAA

mRNA sequence

ATGAGCGGCGAACCGGAGAGCGGAGGATCGAAGGCGGCGAAGATAGTCGGGGCGGTGGTGGGGTTCGCCACTTTCATTGGGTGCGTGGCGAGCGTGTTGTCCGCCGGCGCTGAAGCCATGGGCGACCCGAAGATGATGAAGGCTCCGGGAAGACGGGGGCAGATGATCGAGAGGGGTAAGTTTGAGGAGAACCCCTCTGGGTACTTCAGAGACCTGCGCAATAAATAA

Coding sequence (CDS)

ATGAGCGGCGAACCGGAGAGCGGAGGATCGAAGGCGGCGAAGATAGTCGGGGCGGTGGTGGGGTTCGCCACTTTCATTGGGTGCGTGGCGAGCGTGTTGTCCGCCGGCGCTGAAGCCATGGGCGACCCGAAGATGATGAAGGCTCCGGGAAGACGGGGGCAGATGATCGAGAGGGGTAAGTTTGAGGAGAACCCCTCTGGGTACTTCAGAGACCTGCGCAATAAATAA

Protein sequence

MSGEPESGGSKAAKIVGAVVGFATFIGCVASVLSAGAEAMGDPKMMKAPGRRGQMIERGKFEENPSGYFRDLRNK
Homology
BLAST of CmoCh18G011170 vs. ExPASy TrEMBL
Match: A0A5A7SYF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00210 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-19
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 0

Query: 1  MSGEPESGGSKAAKIVGAVVGFATFIGCVASVL-SAGAEAMGDPKMMKAPGRRGQMIERG 60
          MSGEP++GGSKAAKIVGAVVGFATFIGCVAS+L SA +E  GD KMMKAPG+ G+ + R 
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMLSSADSETAGDRKMMKAPGKHGEEMYRD 60

Query: 61 KFEENPSGYFRDLRNK 76
          +FE++PS YFRDLR K
Sbjct: 61 EFEKDPSKYFRDLRKK 76

BLAST of CmoCh18G011170 vs. ExPASy TrEMBL
Match: A0A0A0KW91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.7e-19
Identity = 52/75 (69.33%), Postives = 63/75 (84.00%), Query Frame = 0

Query: 1  MSGEPESGGSKAAKIVGAVVGFATFIGCVASVLSAGAEAMGDPKMMKAPGRRGQMIERGK 60
          MSGEP++GGSKAAKIVGAVVGFATFIGCVAS+ SA +E  GD + MKAPG+ G+ + R +
Sbjct: 1  MSGEPDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDE 60

Query: 61 FEENPSGYFRDLRNK 76
          FE++PS YFRDLR K
Sbjct: 61 FEKDPSKYFRDLRKK 75

BLAST of CmoCh18G011170 vs. ExPASy TrEMBL
Match: A0A5J5ASQ4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033017 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 9   GSKAAKIVGAVVGFATFIGCVASVLSAGAEAMGDPKMMKAPGRRGQMIERGKFEENPSGY 68
           GS   K++GAV G A     ++S+LS G+EA  + KMMKAPGR G  I R  FE+NP  Y
Sbjct: 72  GSTLGKVIGAVAGIAVAAWSLSSLLS-GSEAESNEKMMKAPGRDG-YIPRSDFEKNPKDY 131

Query: 69  FRDLRN 75
           F +LRN
Sbjct: 132 FSNLRN 135

BLAST of CmoCh18G011170 vs. ExPASy TrEMBL
Match: A0A5D3CFA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00220 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 15 IVGAVVGFATFIGCVASVLSAGAEAMGDPKMMKAPGRRGQMIERGKFEENPSGYFRDLRN 74
          I+G VVG A+ +  VAS++S      G+PKMMKAPG+ G  I R  FE+NP+ YFR+LR+
Sbjct: 9  IIGGVVGVASLVVSVASLMS------GNPKMMKAPGKDG-YIPRAAFEKNPAAYFRNLRS 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SYF62.8e-1972.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KW913.7e-1969.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606810 PE=4 SV=1[more]
A0A5J5ASQ45.1e-0551.52Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_033017 PE=4 SV=1[more]
A0A5D3CFA62.5e-0451.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039926Protein egg apparatus-1PANTHERPTHR33333ERYTHROCYTE MEMBRANE PROTEIN 1-LIKEcoord: 8..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G011170.1CmoCh18G011170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane