CmoCh18G010290 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G010290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein
Location	Cmo_Chr18: 11077585 .. 11078926 (+)
RNA-Seq Expression	CmoCh18G010290
Synteny	CmoCh18G010290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTATGGCCGTGCGGGTCTCTTCAACCTCATAACCGCCGCCGCAGAACACCTCCGCCCTGGTAATTCTCACTTTATCATAATTCCTTACCTATGATATCAAATCGGGTTAGGAATCACGGATCTTCACAATAGTATGATGTTGTCCATTTTAAGCCTAAACTATAGTGACTTTGATTTGGACTTTCCCAAAAGGGCTCATCGTTTATATTCCTTAGTTATCAATCGATGATTCCTAACACGGTTTGATATTAGGAATCACGGGTTTTCACAATAGTTCGATATTGTCCACTTTAAGCATAAGCTCTCGTGGCTTGATTTGAGCTTACCCAAAAAGCCTCGTACTAATGTAGATATATTATTTACTTATAAACATCATTCCCTAAATTAGGGAACGTGGACTCTCTCCCAACAATCTTGAACCAATTTCTTAAATTTTTTGGATTAAAAAATTATATAAAACAGTTAAATTTGTTGTTTTTTTGTTTACCCTAAAAAGATTACATTATATAAAGAATTAAAAATATATTCTTTATGAACATGTATGAGGAAATTCAAAATGTTGGTATGTAAAATTTATTATTTTTATTTTTATTTTATTTAATGACATTGAAAGTTGTCTGTTTTTAGCTATTTTCAAGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGAAACCGGTTCAAAAAGCCCGACCATCGAGCCAAATCCAAACCCAAACCCGGACCGGGTCATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCCGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAATGGAAATTAAAAATGAAATTAAAATAATTAATTAGGAATTAGGGATGGAGTGTTGATTTCCTATGCATAAAGCAGTTATTAGTATTTACTGAGCTCTGCAATTTTCCG

mRNA sequence

ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTATGGCCGTGCGGGTCTCTTCAACCTCATAACCGCCGCCGCAGAACACCTCCGCCCTGCTATTTTCAAGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGAAACCGGTTCAAAAAGCCCGACCATCGAGCCAAATCCAAACCCAAACCCGGACCGGGTCATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCCGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAATGGAAATTAAAAATGAAATTAAAATAATTAATTAGGAATTAGGGATGGAGTGTTGATTTCCTATGCATAAAGCAGTTATTAGTATTTACTGAGCTCTGCAATTTTCCG

Coding sequence (CDS)

ATGAGAATGAGCTGCAATGGCTGCCGGATCCTTCGCAAAGGCTGCAGCCATGACTGTATTATCAGACCTTGTCTTCAATGGATCCCCTCCCCTGATTCTCAGGCCAACGCCACCATCTTTCTTGCCAAATTCTATGGCCGTGCGGGTCTCTTCAACCTCATAACCGCCGCCGCAGAACACCTCCGCCCTGCTATTTTCAAGTCGTTGCTGTACGAGGCATGCGGCCGGATGGTGAATCCGGTCTACGGCTCCGTCGGATTGCTCTGCTCCGGCGACTGGGATAAGTGTCAGGCCGCCGTCGACGCCGTGTTGACCGGATCCATGATCGTCGAACCAGACGCGCCGCTGTCAAACACTAACCTTTCCCTTAAATGTTGCGACATTCGTCATGTTTGTAACGACACCAATTTGGCAGTTCCCGGCGAGCTTCACAAGGGCAAGACTCGAAACCGGTTCAAAAAGCCCGACCATCGAGCCAAATCCAAACCCAAACCCGGACCGGGTCATGAATTGGGAAGTGGGTCGAATGTGGAGGTGATAGAGATAGACCGAATGGCCGATGATTTGATGACGAACCGGAGGAAACCGGGTTGGGTTTTGAGAAATGGAATGTGGGTTGAGGAGGAGGATGTTGAGCTGGAGCTGACTCTTAATTCGGCTCAGTAA

Protein sequence

MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ

Homology

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BLAST of CmoCh18G010290 vs. ExPASy Swiss-Prot
Match: Q9CA30 (LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 9.6e-49
Identity = 100/167 (59.88%), Postives = 119/167 (71.26%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MR+SCNGCR+LRKGC+ DC IRPCLQWI S DSQANAT+FLAKFYGRAGL NLI +  +H
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIF+SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVL G  I     P ++ +
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 LSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK 155
             +    +  DIRHV  D         NLA     +K KT+  RFK+
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKR 167

[Close]

BLAST of CmoCh18G010290 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.8e-48
Identity = 102/183 (55.74%), Postives = 119/183 (65.03%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS DC IRPCL WI SP++QANAT+FLAKFYGRAGL NLI A   H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSN 120
           LRP IF+SLL+EACGR+VNP+YGSVGLL SG+W  CQ AV+AV+ G  + E   DA    
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 TNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSG 178
               LK  DIRH+  D N A       +L   KTR R K+    A      G   E    
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR-RAKRVSTVAIQAESEGKSDEASHD 180

[Close]

BLAST of CmoCh18G010290 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-47
Identity = 91/135 (67.41%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS +C IRPCLQWI S +SQANAT+FLAKFYGRAGL NL+    +H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN 120
           LRPAIF+SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS +  +  DA ++ 
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 --TNLSLKCCDIRHV 132
                + K CDIRHV
Sbjct: 121 QAPPFNNKLCDIRHV 135

[Close]

BLAST of CmoCh18G010290 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.9e-38
Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI SP++Q +AT+F+AKF+GRAGL + I+A  E   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G+VGLL +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107

[Close]

BLAST of CmoCh18G010290 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-37
Identity = 66/107 (61.68%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI + D+Q +AT+F+AKF+GRAGL + I+A  +  R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G++G+L +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107

[Close]

BLAST of CmoCh18G010290 vs. ExPASy TrEMBL
Match: A0A6J1G195 (LOB domain-containing protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111449763 PE=3 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.1e-127
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120

Query: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVI 180
           LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVI
Sbjct: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVI 180

Query: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 222
           EIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ
Sbjct: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 221

[Close]

BLAST of CmoCh18G010290 vs. ExPASy TrEMBL
Match: A0A6J1HWX5 (LOB domain-containing protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC111467594 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 6.8e-122
Identity = 215/221 (97.29%), Postives = 216/221 (97.74%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH
Sbjct: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN
Sbjct: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120

Query: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVI 180
           LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPD+R KS  KPGPG ELGSGSNVEVI
Sbjct: 121 LSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDNRTKS--KPGPGRELGSGSNVEVI 180

Query: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 222
           EIDRMADDLMTNRRKPGWVLRNGMWVEEE VELELTLNSAQ
Sbjct: 181 EIDRMADDLMTNRRKPGWVLRNGMWVEEEHVELELTLNSAQ 219

[Close]

BLAST of CmoCh18G010290 vs. ExPASy TrEMBL
Match: A0A0A0KUI0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609680 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 1.1e-82
Identity = 162/220 (73.64%), Postives = 175/220 (79.55%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA+HLR
Sbjct: 1   MSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAQHLR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNT-NL 122
           PAIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM VEPD P SN  NL
Sbjct: 61  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNVEPDTPPSNNGNL 120

Query: 123 SLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVIE 182
           SLKCCDIRHVCN+ NLA  G+L K K R+RFKKPDHR  +KPKPGP H+LG GS+     
Sbjct: 121 SLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHR--TKPKPGPDHDLGIGSS----- 180

Query: 183 IDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 222
            D    D+    R          + + +DVELELTL SAQ
Sbjct: 181 FDEAGRDVSNGSR----------FEKADDVELELTLKSAQ 203

[Close]

BLAST of CmoCh18G010290 vs. ExPASy TrEMBL
Match: A0A5A7SXG6 (LOB domain-containing protein 40-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005720 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 9.0e-82
Identity = 165/232 (71.12%), Postives = 176/232 (75.86%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           M+MSCNGCRILRKGCS DCIIRPCLQWIPS DSQANATIFLAKFYGRAGLFNLITAAA H
Sbjct: 1   MKMSCNGCRILRKGCSDDCIIRPCLQWIPSSDSQANATIFLAKFYGRAGLFNLITAAAHH 60

Query: 61  LRP----------AIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIV 120
           LRP          AIFKSLLYEACGRMVNPVYGSVGLLCSGDW++CQAAVDAVL GSM V
Sbjct: 61  LRPVKLSSCCVFLAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQAAVDAVLNGSMNV 120

Query: 121 EPDAPLSNT-NLSLKCCDIRHVCNDTNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGH 180
           EPD P SN  N SLKCCDIRHVCN+ NLA  G+L K K R+RFKKPDHR KS  KPGP H
Sbjct: 121 EPDTPPSNNGNFSLKCCDIRHVCNEPNLAASGDLLKVKGRSRFKKPDHRTKS--KPGPDH 180

Query: 181 ELGSGSNVEVIEIDRMADDLMTNRRKPGWVLRNGMWVEEEDVELELTLNSAQ 222
           ELG GS+ +                + G  LR+G   E+ DVELELTL SAQ
Sbjct: 181 ELGIGSSSD----------------ESGRDLRSGSRFEKADVELELTLKSAQ 214

[Close]

BLAST of CmoCh18G010290 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 5.1e-77
Identity = 155/211 (73.46%), Postives = 168/211 (79.62%), Query Frame = 0


Query: 15  CSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLRPAIFKSLLYEAC 74
           CS +C+IRPCL+WI SPDSQANATIFLAKFYGRAGLFNLITAA++HLRPAIFKSLLYEAC
Sbjct: 86  CSDECVIRPCLEWISSPDSQANATIFLAKFYGRAGLFNLITAASQHLRPAIFKSLLYEAC 145

Query: 75  GRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTNLSLKCCDIRHVCND 134
           GRMVNPVYGSVGLLCSGDWD+CQAAVDAVLTG+M VE +AP SN N  + CCDIRHVC D
Sbjct: 146 GRMVNPVYGSVGLLCSGDWDRCQAAVDAVLTGTMNVETNAPPSNAN--VLCCDIRHVCTD 205

Query: 135 TNLAVPGELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSGSNVEVIEIDR---MADDLMT 194
           TNLA PGE  K K R+RFKKPDHR  +KPK GP   LGSGSN      +R   M D L  
Sbjct: 206 TNLAAPGEPRKVKARSRFKKPDHR--TKPKSGPAEILGSGSNWAESGANRQIEMVDALTV 265

Query: 195 NRRKPGWVLRNGMWVEEED-VELELTLNSAQ 222
           NR KP  VLR+G   E  D VELELTLNSAQ
Sbjct: 266 NRGKPNRVLRHGSRSERVDNVELELTLNSAQ 292

[Close]

BLAST of CmoCh18G010290 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 )

HSP 1 Score: 194.9 bits (494), Expect = 6.8e-50
Identity = 100/167 (59.88%), Postives = 119/167 (71.26%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MR+SCNGCR+LRKGC+ DC IRPCLQWI S DSQANAT+FLAKFYGRAGL NLI +  +H
Sbjct: 1   MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVEPDAPLSNTN 120
           LRPAIF+SLLYEACGR+VNPV GSVGL+ SG+W +CQAAVDAVL G  I     P ++ +
Sbjct: 61  LRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSASAS 120

Query: 121 LSL----KCCDIRHVCND--------TNLAVPGELHKGKTR-NRFKK 155
             +    +  DIRHV  D         NLA     +K KT+  RFK+
Sbjct: 121 HQIIPPHRTYDIRHVAKDPTTGGDSSENLATRVNANKSKTQTGRFKR 167

[Close]

BLAST of CmoCh18G010290 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 )

HSP 1 Score: 192.6 bits (488), Expect = 3.4e-49
Identity = 102/183 (55.74%), Postives = 119/183 (65.03%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS DC IRPCL WI SP++QANAT+FLAKFYGRAGL NLI A   H
Sbjct: 1   MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMIVE--PDAPLSN 120
           LRP IF+SLL+EACGR+VNP+YGSVGLL SG+W  CQ AV+AV+ G  + E   DA    
Sbjct: 61  LRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKGEPVKEIATDAATIG 120

Query: 121 TNLSLKCCDIRHVCNDTNLAVPG----ELHKGKTRNRFKKPDHRAKSKPKPGPGHELGSG 178
               LK  DIRH+  D N A       +L   KTR R K+    A      G   E    
Sbjct: 121 QGPPLKIYDIRHISKDDNSAAAATGSTDLKLAKTR-RAKRVSTVAIQAESEGKSDEASHD 180

[Close]

BLAST of CmoCh18G010290 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 )

HSP 1 Score: 191.4 bits (485), Expect = 7.6e-49
Identity = 91/135 (67.41%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 1   MRMSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEH 60
           MRMSCNGCR+LRKGCS +C IRPCLQWI S +SQANAT+FLAKFYGRAGL NL+    +H
Sbjct: 1   MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDH 60

Query: 61  LRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI--VEPDAPLSN 120
           LRPAIF+SLLYEACGR+VNP+YGSVGLL SG+W  CQAAV+AV+ GS +  +  DA ++ 
Sbjct: 61  LRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAAVTG 120

Query: 121 --TNLSLKCCDIRHV 132
                + K CDIRHV
Sbjct: 121 QAPPFNNKLCDIRHV 135

[Close]

BLAST of CmoCh18G010290 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 )

HSP 1 Score: 159.1 bits (401), Expect = 4.2e-39
Identity = 69/107 (64.49%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI SP++Q +AT+F+AKF+GRAGL + I+A  E   
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQC 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G+VGLL +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSL 107

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BLAST of CmoCh18G010290 vs. TAIR 10
Match: AT5G67420.1 (LOB domain-containing protein 37 )

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-38
Identity = 66/107 (61.68%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 3   MSCNGCRILRKGCSHDCIIRPCLQWIPSPDSQANATIFLAKFYGRAGLFNLITAAAEHLR 62
           MSCNGCR+LRKGCS +CI+RPC+QWI + D+Q +AT+F+AKF+GRAGL + I+A  +  R
Sbjct: 1   MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQR 60

Query: 63  PAIFKSLLYEACGRMVNPVYGSVGLLCSGDWDKCQAAVDAVLTGSMI 110
           PA+F+SLLYEACGR VNPV G++G+L +G+W+ CQAAV+ VL G  +
Sbjct: 61  PALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSL 107

The following BLAST results are available for this feature:

BLAST of CmoCh18G010290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CA30	9.6e-49	59.88	LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 S...	[more]
Q9M886	4.8e-48	55.74	LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 S...	[more]
Q9ZW96	1.1e-47	67.41	LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 S...	[more]
Q9SN23	5.9e-38	64.49	LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 S...	[more]
Q9FN11	2.9e-37	61.68	LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 S...	[more]

BLAST of CmoCh18G010290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G195	1.1e-127	100.00	LOB domain-containing protein 42-like OS=Cucurbita moschata OX=3662 GN=LOC111449...	[more]
A0A6J1HWX5	6.8e-122	97.29	LOB domain-containing protein 42-like OS=Cucurbita maxima OX=3661 GN=LOC11146759...	[more]
A0A0A0KUI0	1.1e-82	73.64	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G609680 PE=3 SV...	[more]
A0A5A7SXG6	9.0e-82	71.12	LOB domain-containing protein 40-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1DAV9	5.1e-77	73.46	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of CmoCh18G010290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68510.1	6.8e-50	59.88	LOB domain-containing protein 42	[more]
AT3G02550.1	3.4e-49	55.74	LOB domain-containing protein 41	[more]
AT1G67100.1	7.6e-49	67.41	LOB domain-containing protein 40	[more]
AT3G49940.1	4.2e-39	64.49	LOB domain-containing protein 38	[more]
AT5G67420.1	2.1e-38	61.68	LOB domain-containing protein 37	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 4..103 e-value: 5.8E-23 score: 81.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 3..109 score: 16.142799
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..176
None	No IPR available	PANTHER	PTHR31304	LOB DOMAIN-CONTAINING PROTEIN 38	coord: 1..184
None	No IPR available	PANTHER	PTHR31304:SF48	LOB DOMAIN-CONTAINING PROTEIN 41-LIKE	coord: 1..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010290.1	CmoCh18G010290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane