CmoCh18G010110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G010110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X2
Location	Cmo_Chr18: 10976821 .. 10977447 (+)
RNA-Seq Expression	CmoCh18G010110
Synteny	CmoCh18G010110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTAGATCTCTCAATTTTCATTTTCATTTCCATCTTCCTCCCGCCGGCGACACCCTCCGCCGCCGTAGACCGCCACTTCGAGGCTTGCCGTCGACCAATGTCCTGCGACGACGGCCAGACAATTCAGTACCCATTTCACATCGAACATCGCCAACAGAAATTCTGTGGATACCCAGGATTCAAGCTAAAATGCCACCAAAACGGCCACCCAATCCTCCATCTCTCCGGCAGGGATCTCGTCGTCCGGAGTATTTCATACAAAACTCACTCTCTCCGTCTCTCCGACGACGCGGTTCTGACGGCCTCTGAGTGTCGTCTTTTGATTGGCAACCTCTCTCTGTTTAACGAACCATTCCATCTCGCCGATGGCCAGGGAGAGATTTGTGGCGGAGAAGAAACGCGGCGTGCGGCGGAGAGAAATGGGTTGGTGATGAAATGGACGGCGGGAGAGTGTAGCTTCTGCAACAAGAGTGGTGGGTTTTGTGGGTTTGATTACTCGACGCATTATTTCAAGTGTTATTGTCCTGATCGGCCTCATGCTCTTCGCTGTAATCCGCCATCGCCGCCGGGTGAGTTCCTTTTTTTCTTCTCCGCCACCGCATTCTCTCTGCCATGGATTTGA

mRNA sequence

ATGGTGTTAGATCTCTCAATTTTCATTTTCATTTCCATCTTCCTCCCGCCGGCGACACCCTCCGCCGCCGTAGACCGCCACTTCGAGGCTTGCCGTCGACCAATGTCCTGCGACGACGGCCAGACAATTCAGTACCCATTTCACATCGAACATCGCCAACAGAAATTCTGTGGATACCCAGGATTCAAGCTAAAATGCCACCAAAACGGCCACCCAATCCTCCATCTCTCCGGCAGGGATCTCGTCGTCCGGAGTATTTCATACAAAACTCACTCTCTCCGTCTCTCCGACGACGCGGTTCTGACGGCCTCTGAGTGTCGTCTTTTGATTGGCAACCTCTCTCTGTTTAACGAACCATTCCATCTCGCCGATGGCCAGGGAGAGATTTGTGGCGGAGAAGAAACGCGGCGTGCGGCGGAGAGAAATGGGTTGGTGATGAAATGGACGGCGGGAGAGTGTAGCTTCTGCAACAAGAGTGGTGGGTTTTGTGGGTTTGATTACTCGACGCATTATTTCAAGTGTTATTGTCCTGATCGGCCTCATGCTCTTCGCTGTAATCCGCCATCGCCGCCGGGTGAGTTCCTTTTTTTCTTCTCCGCCACCGCATTCTCTCTGCCATGGATTTGA

Coding sequence (CDS)

ATGGTGTTAGATCTCTCAATTTTCATTTTCATTTCCATCTTCCTCCCGCCGGCGACACCCTCCGCCGCCGTAGACCGCCACTTCGAGGCTTGCCGTCGACCAATGTCCTGCGACGACGGCCAGACAATTCAGTACCCATTTCACATCGAACATCGCCAACAGAAATTCTGTGGATACCCAGGATTCAAGCTAAAATGCCACCAAAACGGCCACCCAATCCTCCATCTCTCCGGCAGGGATCTCGTCGTCCGGAGTATTTCATACAAAACTCACTCTCTCCGTCTCTCCGACGACGCGGTTCTGACGGCCTCTGAGTGTCGTCTTTTGATTGGCAACCTCTCTCTGTTTAACGAACCATTCCATCTCGCCGATGGCCAGGGAGAGATTTGTGGCGGAGAAGAAACGCGGCGTGCGGCGGAGAGAAATGGGTTGGTGATGAAATGGACGGCGGGAGAGTGTAGCTTCTGCAACAAGAGTGGTGGGTTTTGTGGGTTTGATTACTCGACGCATTATTTCAAGTGTTATTGTCCTGATCGGCCTCATGCTCTTCGCTGTAATCCGCCATCGCCGCCGGGTGAGTTCCTTTTTTTCTTCTCCGCCACCGCATTCTCTCTGCCATGGATTTGA

Protein sequence

MVLDLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGYPGFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLSLFNEPFHLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCPDRPHALRCNPPSPPGEFLFFFSATAFSLPWI

Homology

[Close]

BLAST of CmoCh18G010110 vs. ExPASy Swiss-Prot
Match: P0C5E2 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 OS=Arabidopsis thaliana OX=3702 GN=LRK10L-1.2 PE=2 SV=3)

HSP 1 Score: 89.0 bits (219), Expect = 7.0e-17
Identity = 67/246 (27.24%), Postives = 97/246 (39.43%), Query Frame = 0


Query: 2   VLDLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGYPG 61
           +L  SIF + +I    AT + ++D  F+AC  P SC  G  I YPF++  +Q+ FCGYP 
Sbjct: 8   LLYTSIFFYFTII---ATQTLSLDPKFKAC-EPKSCGKGPQISYPFYLSGKQESFCGYPS 67

Query: 62  FKLKC-HQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLSLFNEPF 121
           F+L C  +   P+L +SG + V+++ISY T S ++ +    +   C   + NL+L   PF
Sbjct: 68  FELTCDDEEKLPVLGISGEEYVIKNISYLTQSFQVVNSKA-SHDPCPRPLNNLTLHRTPF 127

Query: 122 H----------------------------------------------------------- 181
                                                                       
Sbjct: 128 FVNPSHINFTILYNCSDHLLEDFRTYPLTCARNTSLLRSFGVFDRKKLGKEKQIASMSCQ 187

[Close]

BLAST of CmoCh18G010110 vs. ExPASy TrEMBL
Match: A0A6J1G210 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449960 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.5e-112
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MVLDLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGYP 60
           MVLDLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGYP
Sbjct: 1   MVLDLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGYP 60

Query: 61  GFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLSLFNEPF 120
           GFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLSLFNEPF
Sbjct: 61  GFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLSLFNEPF 120

Query: 121 HLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCPDRP 180
           HLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCPDRP
Sbjct: 121 HLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCPDRP 180

Query: 181 HALRCNPPSPP 192
           HALRCNPPSPP
Sbjct: 181 HALRCNPPSPP 191

[Close]

BLAST of CmoCh18G010110 vs. ExPASy TrEMBL
Match: A0A6J1HSS0 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467449 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 8.4e-106
Identity = 180/191 (94.24%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MVLDLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGYP 60
           MVL+ SIFI ISIFLPPATPSAAVDRHFEACRRPM+CDDGQTIQYPFHIEHRQQKFCGYP
Sbjct: 1   MVLNFSIFILISIFLPPATPSAAVDRHFEACRRPMACDDGQTIQYPFHIEHRQQKFCGYP 60

Query: 61  GFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLSLFNEPF 120
           GFKLKCHQNGHPILHLSGRD+VV SISY+THSLRLSDDAVLTASECRLLIGNLSLFNEPF
Sbjct: 61  GFKLKCHQNGHPILHLSGRDIVVLSISYETHSLRLSDDAVLTASECRLLIGNLSLFNEPF 120

Query: 121 HLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCPDRP 180
           HLADGQGEIC  EE RRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTH+FKCYCPDRP
Sbjct: 121 HLADGQGEICSREERRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHFFKCYCPDRP 180

Query: 181 HALRCNPPSPP 192
           HALRCNPPSPP
Sbjct: 181 HALRCNPPSPP 191

[Close]

BLAST of CmoCh18G010110 vs. ExPASy TrEMBL
Match: A0A1S3BFJ8 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103489305 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.0e-76
Identity = 141/194 (72.68%), Postives = 159/194 (81.96%), Query Frame = 0


Query: 1   MVL-DLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGY 60
           MVL +L IFIFI + L   TPS AVD HFEACR+PM+C D QTIQYPF+I +RQ+ FCGY
Sbjct: 1   MVLSNLPIFIFILVLL---TPSVAVDFHFEACRQPMTCGDNQTIQYPFYIHNRQRSFCGY 60

Query: 61  PGFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLS-LFNE 120
           PGF+LKCHQNGHPILHL+GRD  VRSISY+ HSLRLSD AV +A+EC  LI +LS L NE
Sbjct: 61  PGFQLKCHQNGHPILHLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSALIRSLSVLTNE 120

Query: 121 PFHLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCPD 180
            FHL DGQ  ICGGEE+R  AERNGLV++WTAGEC FCNKSGG+CGFD STH+FKCYCPD
Sbjct: 121 RFHLGDGQDGICGGEESRDEAERNGLVVEWTAGECRFCNKSGGYCGFDDSTHFFKCYCPD 180

Query: 181 RPHALRCNPPSPPG 193
           RPHA  C PP PPG
Sbjct: 181 RPHAFHCTPP-PPG 190

[Close]

BLAST of CmoCh18G010110 vs. ExPASy TrEMBL
Match: A0A1S3BF16 (LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489305 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.5e-75
Identity = 139/192 (72.40%), Postives = 157/192 (81.77%), Query Frame = 0


Query: 1   MVL-DLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGY 60
           MVL +L IFIFI + L   TPS AVD HFEACR+PM+C D QTIQYPF+I +RQ+ FCGY
Sbjct: 1   MVLSNLPIFIFILVLL---TPSVAVDFHFEACRQPMTCGDNQTIQYPFYIHNRQRSFCGY 60

Query: 61  PGFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLS-LFNE 120
           PGF+LKCHQNGHPILHL+GRD  VRSISY+ HSLRLSD AV +A+EC  LI +LS L NE
Sbjct: 61  PGFQLKCHQNGHPILHLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSALIRSLSVLTNE 120

Query: 121 PFHLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCPD 180
            FHL DGQ  ICGGEE+R  AERNGLV++WTAGEC FCNKSGG+CGFD STH+FKCYCPD
Sbjct: 121 RFHLGDGQDGICGGEESRDEAERNGLVVEWTAGECRFCNKSGGYCGFDDSTHFFKCYCPD 180

Query: 181 RPHALRCNPPSP 191
           RPHA  C PP P
Sbjct: 181 RPHAFHCTPPPP 189

[Close]

BLAST of CmoCh18G010110 vs. ExPASy TrEMBL
Match: A0A0A0KUJ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610365 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.3e-74
Identity = 136/191 (71.20%), Postives = 156/191 (81.68%), Query Frame = 0


Query: 1   MVLDLSIFIFISIFLPP--ATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCG 60
           MV +L IFIFI + L P  +TPSAAVD HFE CR+PM+C D QTIQYPF+I++RQQ FCG
Sbjct: 1   MVSNLPIFIFILLLLFPDKSTPSAAVDFHFEDCRQPMTCGDNQTIQYPFYIQNRQQSFCG 60

Query: 61  YPGFKLKCHQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLS-LFN 120
           YPGF+LKCHQNGHPIL+L+GRD  VRSISY+ HSLRLSD AV +A+EC  LI NLS L N
Sbjct: 61  YPGFQLKCHQNGHPILNLAGRDFSVRSISYEEHSLRLSDHAVSSAAECSSLIRNLSVLAN 120

Query: 121 EPFHLADGQGEICGGEETRRAAERNGLVMKWTAGECSFCNKSGGFCGFDYSTHYFKCYCP 180
           E F L DGQ  IC GEE+R  AERNGL+++WTAGEC FCNKSGG+CGFD STH+FKCYCP
Sbjct: 121 ERFSLGDGQDRICDGEESRDEAERNGLIVEWTAGECKFCNKSGGYCGFDESTHFFKCYCP 180

Query: 181 DRPHALRCNPP 189
           DRPHA  C PP
Sbjct: 181 DRPHAFHCTPP 191

[Close]

BLAST of CmoCh18G010110 vs. TAIR 10
Match: AT1G18390.2 (Protein kinase superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 5.0e-18
Identity = 67/246 (27.24%), Postives = 97/246 (39.43%), Query Frame = 0


Query: 2   VLDLSIFIFISIFLPPATPSAAVDRHFEACRRPMSCDDGQTIQYPFHIEHRQQKFCGYPG 61
           +L  SIF + +I    AT + ++D  F+AC  P SC  G  I YPF++  +Q+ FCGYP 
Sbjct: 8   LLYTSIFFYFTII---ATQTLSLDPKFKAC-EPKSCGKGPQISYPFYLSGKQESFCGYPS 67

Query: 62  FKLKC-HQNGHPILHLSGRDLVVRSISYKTHSLRLSDDAVLTASECRLLIGNLSLFNEPF 121
           F+L C  +   P+L +SG + V+++ISY T S ++ +    +   C   + NL+L   PF
Sbjct: 68  FELTCDDEEKLPVLGISGEEYVIKNISYLTQSFQVVNSKA-SHDPCPRPLNNLTLHRTPF 127

Query: 122 H----------------------------------------------------------- 181
                                                                       
Sbjct: 128 FVNPSHINFTILYNCSDHLLEDFRTYPLTCARNTSLLRSFGVFDRKKLGKEKQIASMSCQ 187

The following BLAST results are available for this feature:

BLAST of CmoCh18G010110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C5E2	7.0e-17	27.24	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 OS=A...	[more]

BLAST of CmoCh18G010110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G210	3.5e-112	100.00	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]
A0A6J1HSS0	8.4e-106	94.24	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 isof...	[more]
A0A1S3BFJ8	9.0e-76	72.68	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]
A0A1S3BF16	1.5e-75	72.40	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 isof...	[more]
A0A0A0KUJ6	1.3e-74	71.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G610365 PE=4 SV=1	[more]

BLAST of CmoCh18G010110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18390.2	5.0e-18	27.24	Protein kinase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025287	Wall-associated receptor kinase, galacturonan-binding domain	PFAM	PF13947	GUB_WAK_bind	coord: 31..97 e-value: 7.2E-17 score: 61.6
IPR032872	Wall-associated receptor kinase, C-terminal	PFAM	PF14380	WAK_assoc	coord: 141..178 e-value: 2.7E-8 score: 34.4
None	No IPR available	PANTHER	PTHR33138	OS01G0690200 PROTEIN	coord: 139..187
None	No IPR available	PANTHER	PTHR33138:SF27	WALL-ASSOCIATED RECEPTOR KINASE GALACTURONAN-BINDING PROTEIN	coord: 139..187
None	No IPR available	PANTHER	PTHR33138	OS01G0690200 PROTEIN	coord: 5..129
None	No IPR available	PANTHER	PTHR33138:SF27	WALL-ASSOCIATED RECEPTOR KINASE GALACTURONAN-BINDING PROTEIN	coord: 5..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G010110.1	CmoCh18G010110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0030247	polysaccharide binding
molecular_function	GO:0004672	protein kinase activity