CmoCh18G009990 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G009990
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRad60-SLD domain-containing protein
LocationCmo_Chr18: 10898931 .. 10902015 (-)
RNA-Seq ExpressionCmoCh18G009990
SyntenyCmoCh18G009990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCGTTAATACGAAAAGAGAAATTCAGTAAGGAGTGGCTAGGTAACGCTTCGACGGGAAACGGACAGTCGATTTGAATTTCCCGGCCGGCTAGGACGAAGATTGATCGGAGAAGAAAAGGAAGAGTTTAGATTTCGAGGTCTTTGACAATGGCGAGTCTCCTTCTTTCTTTAATTTTATCGGCACGGAATTCTTTTATGTATCATTACTACTCATGGTTTTCCCAACACACTTCGTGATTCTTACTTTTGAGTTCTTATTTTCAGGCGGATTCCGCTGAGGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCACTCTGTTGTTTGTCTCGATGGTAATCGTTCTCAAGCTTAAGTTAAATTTGAATTTCATGAAGTTGGAATCTTCCATTTCACTGTGTTTTTGAAGTTTTTATAACTGTCGCTTCAGAGATAAATTTCGAAATTGATTTTCCTTGTGCTCGTAGTCATGGTTGGTAACCTGGTGTTTTATTTTTCTTCTGCTTGGACTAAAATCAGACGAGGATTCGGACGTAGAGGAGTCTCGTGTACCTTTTTCAAAGCGAACGAAGATTTCAAATTCAGCGGTATATAATTACCTTCATGTAGTGAAATTGCAGACTTTCTGTTAGCAGAGGATTAATGTTCGTTGGAACAGTCAGTAAAGCTAGTTTTATGTGATTCTTTCCTTTCAATCAATATTTAGGTTACGAATTTTGTGGAAAATCCATTTGTGGAAATTGAAGATAAAGAGGAAGATTGGCTGCCCCCTCCACCGAAGGTGTCTGTTGATGCAAAAGATATGTGTGGGGAAGATTCGACATTGAAGAAGTTAAGGTATTCCATCCTAGTAACATGCATCTATTGCTTGATTAATTCACTTTTATTTCAACATGGAAACCTTAGGGCTTGTTTAGTAGGCAGTCTTGGCAATGAATTTTATAAACAAGGGATTCAACGAAAATAGGGTTGTATTCAGATATATGTTTGATAGCTGATTTTGAAATTGAATTCCAATTTGAACAATAATTCAAAATCTGCTCTATAATATGGAACTAGTTGTAGTTACAGAACTGAATATTAGGTTGAATATAAATCACTATTAATTGATTTTTTATTTATAAATTTTGTATAATCATTATTTTGCAATATCATACAATTTATAATATATGTATTTTAATTTAACAAAAATAAATTGAGTTTATAATATGAAATAGTATATTTTCTTAAGTTTTATCTTTTTTAATATAATTTTGCATTTTAAATTTTCAAATTCAAAATCTGGATACAGTGAAAACACAAAAAAGTTGTTTTTCAAATTTTTTTATTACCTAGTTGGGAAACAATTTTCGAAAACACATACGCCAAATGCATACACTCACTAGACTCGGTGAATTGAAAAACATGAAGCAGAATCGAGATTGTCTACCAAAAAAACCCTTATTTTTTTTTCTCTGCATAGGATTCTATGGCATGTCTCTTGCCATTTTGCCTTGGCATATCATATGTAATCTGCACTTATAGGTTAAAGAAGCAAGAGTTGGCCTCGGTTGCTCTATCGGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAGAGTGGATGTTGAAAACACGCCCCAAGTCTCCCTGGAGCCTGCTTTGGATGACCAAGCTCCAATTGCTTCTAAAGAAAGAGAAAAGATTGTTATTTCTGTACGAGATAGTGACAAGGAAGAGCTCCAACAGTTTCGCCTGTTTGTGGTATGTTCTTGTGCATGATTCCATGTTATCCACAATTCAGACTTGCATTCTTCAAGTACAACAACCATCCTGTTTTGTCAACATTCCTCATGATTTGCTATAGCTGTTTTTGATGTACTCTCAAGATGCCTTTAATTTGCCCAATAATCTGGTTGGCATGTTTAGAATCATATGTAGGGAAATGAATGAATTTGGTGAACTATGGTAGATTGCTTAACATACGTATCATGGTTCATATTATACATCAGCTAATCTTGAAACATTGATTTAAAAAAAAAAAAAAAAGGTGAACAAATTTGAACTTCGTCCTTTAAATTCCCATCTTGGGAGAGGTAGTTCCTTTAGTATCTGGGTTCATGACTTGGTTACTGTATAATTGTCAATAGTCATGAGCCGCATGTACCCTTTAATTTGATTTTTTTGTCTTTCCTTTCCACGTTATGATTGGCTTAACTCCCCATTGTGGGGTGATCATTAGATTTGAACCGAGATGTTATTCATTACTTTTGTTACATTAGTGTTCTGTTCTTTGAATTATTGTACTTTCTATGATTCATACTCATTTAGACTATGATGAAAGTGTTACGAGTCTCCATTGGTGATGGTAGTTCAGACATTATTTGATTGAATTACTTCAGAAGAGTCTCCCTGATCTTCATATTTTCTGTCATCATATCAGTTAGATTGTTGTTGAAATTAGCTTTCTTTTGTCATTGCCTTCGGCACGGGAGCGCCGCTATAGGCCCTCAGTATTTCAAGCATGTTTGAGATGATTTTGAAATTATTGCAACCACTTTTTTCACCATGTGTTCCATATCTAAAATTTGAATGTTTTTACAGGATGACAAGTTCGAGCGACTTTTCAAAATGTACTCAAACAAACTTAAAATCGACCCCAAGAGTTTGGTTTTCGTTTTTGATGGGGATAAAGTCGGGCCAGATGATACCCCAGTCGGCCTCGGCATGGAAGACGATGATATGATTGAAGTGAACATCAAGTCGAGTTGAATAAAAAGGTGTCTTTTCAATGTATATTTGAGGACTAATTCACCGGTTATGGGACGCAAGACTTAGGATGGAAGGCTGTCGAGGTCCCTTTGTCTGGTAATAACAGTCGTTTGGTATGCACATTGAGATCAATGGAAAAATAAAAATTATGGAGAATATGAATTTTTATAGATATGTTCTCTCTCTCTCTCTCCCTCTCCTCTTCCTCTCCCCTTCTCTCCTCTCCTCCGACGTCATCCTCTCCGCTGCTCCCTCCACCGGTCACCGGTGACTTAATCATGTAATTACACAATAAAATTGTATTAACCTTCCATTTCTCTCTGTAC

mRNA sequence

ACCCGTTAATACGAAAAGAGAAATTCAGTAAGGAGTGGCTAGGTAACGCTTCGACGGGAAACGGACAGTCGATTTGAATTTCCCGGCCGGCTAGGACGAAGATTGATCGGAGAAGAAAAGGAAGAGTTTAGATTTCGAGGTCTTTGACAATGGCGGATTCCGCTGAGGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCACTCTGTTGTTTGTCTCGATGACGAGGATTCGGACGTAGAGGAGTCTCGTGTACCTTTTTCAAAGCGAACGAAGATTTCAAATTCAGCGGTTACGAATTTTGTGGAAAATCCATTTGTGGAAATTGAAGATAAAGAGGAAGATTGGCTGCCCCCTCCACCGAAGGTGTCTGTTGATGCAAAAGATATGTGTGGGGAAGATTCGACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCGGTTGCTCTATCGGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAGAGTGGATGTTGAAAACACGCCCCAAGTCTCCCTGGAGCCTGCTTTGGATGACCAAGCTCCAATTGCTTCTAAAGAAAGAGAAAAGATTGTTATTTCTGTACGAGATAGTGACAAGGAAGAGCTCCAACAGTTTCGCCTGTTTGTGGATGACAAGTTCGAGCGACTTTTCAAAATGTACTCAAACAAACTTAAAATCGACCCCAAGAGTTTGGTTTTCGTTTTTGATGGGGATAAAGTCGGGCCAGATGATACCCCAGTCGGCCTCGGCATGGAAGACGATGATATGATTGAAGTGAACATCAAGTCGAGTTGAATAAAAAGGTGTCTTTTCAATGTATATTTGAGGACTAATTCACCGGTTATGGGACGCAAGACTTAGGATGGAAGGCTGTCGAGGTCCCTTTGTCTGGTAATAACAGTCGTTTGGTATGCACATTGAGATCAATGGAAAAATAAAAATTATGGAGAATATGAATTTTTATAGATATGTTCTCTCTCTCTCTCTCCCTCTCCTCTTCCTCTCCCCTTCTCTCCTCTCCTCCGACGTCATCCTCTCCGCTGCTCCCTCCACCGGTCACCGGTGACTTAATCATGTAATTACACAATAAAATTGTATTAACCTTCCATTTCTCTCTGTAC

Coding sequence (CDS)

ATGGCGGATTCCGCTGAGGAATTTGAGCCCTTGTTCGATTACAGCCGCGTTCAGCCTCACTCTGTTGTTTGTCTCGATGACGAGGATTCGGACGTAGAGGAGTCTCGTGTACCTTTTTCAAAGCGAACGAAGATTTCAAATTCAGCGGTTACGAATTTTGTGGAAAATCCATTTGTGGAAATTGAAGATAAAGAGGAAGATTGGCTGCCCCCTCCACCGAAGGTGTCTGTTGATGCAAAAGATATGTGTGGGGAAGATTCGACATTGAAGAAGTTAAGGTTAAAGAAGCAAGAGTTGGCCTCGGTTGCTCTATCGGCTAAAAACTTGTTGCGAGAAGTGGAGGAATCTGCAAGAGTGGATGTTGAAAACACGCCCCAAGTCTCCCTGGAGCCTGCTTTGGATGACCAAGCTCCAATTGCTTCTAAAGAAAGAGAAAAGATTGTTATTTCTGTACGAGATAGTGACAAGGAAGAGCTCCAACAGTTTCGCCTGTTTGTGGATGACAAGTTCGAGCGACTTTTCAAAATGTACTCAAACAAACTTAAAATCGACCCCAAGAGTTTGGTTTTCGTTTTTGATGGGGATAAAGTCGGGCCAGATGATACCCCAGTCGGCCTCGGCATGGAAGACGATGATATGATTGAAGTGAACATCAAGTCGAGTTGA

Protein sequence

MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVENPFVEIEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEESARVDVENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYSNKLKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS
Homology
BLAST of CmoCh18G009990 vs. ExPASy Swiss-Prot
Match: P55853 (Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 33/82 (40.24%), Postives = 44/82 (53.66%), Query Frame = 0

Query: 135 DQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYSNKLKIDPKSLVFVFDG 194
           D A  A    E I I V   D  E+  FR+       +L K Y+++  +   SL F+FDG
Sbjct: 3   DDAAQAGDNAEYIKIKVVGQDSNEV-HFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDG 62

Query: 195 DKVGPDDTPVGLGMEDDDMIEV 217
            ++  DDTP  L MEDDD+IEV
Sbjct: 63  RRINDDDTPKTLEMEDDDVIEV 83

BLAST of CmoCh18G009990 vs. ExPASy TrEMBL
Match: A0A6J1G027 (uncharacterized protein LOC111449468 OS=Cucurbita moschata OX=3662 GN=LOC111449468 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.2e-115
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0

Query: 1   MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVENPFVE 60
           MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVENPFVE
Sbjct: 1   MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVENPFVE 60

Query: 61  IEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEESARVD 120
           IEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEESARVD
Sbjct: 61  IEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEESARVD 120

Query: 121 VENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYSNK 180
           VENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYSNK
Sbjct: 121 VENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYSNK 180

Query: 181 LKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 222
           LKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS
Sbjct: 181 LKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 221

BLAST of CmoCh18G009990 vs. ExPASy TrEMBL
Match: A0A6J1HTX5 (uncharacterized protein LOC111467764 OS=Cucurbita maxima OX=3661 GN=LOC111467764 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 206/221 (93.21%), Postives = 212/221 (95.93%), Query Frame = 0

Query: 1   MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVENPFVE 60
           MADSAEEFEPLFDYSRVQP SVVCLDDEDSDVEESRVPFSKRTKISNSAVTN V+N  VE
Sbjct: 1   MADSAEEFEPLFDYSRVQPRSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNLVDNQAVE 60

Query: 61  IEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEESARVD 120
            EDKEEDWLPPPPKVSVDAKDM GEDSTLKKLRLKKQELASVALSAKNLLREVEESA+VD
Sbjct: 61  NEDKEEDWLPPPPKVSVDAKDMYGEDSTLKKLRLKKQELASVALSAKNLLREVEESAKVD 120

Query: 121 VENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYSNK 180
           V  TP VSL+PA+DDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMY++K
Sbjct: 121 VGTTPHVSLDPAVDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYADK 180

Query: 181 LKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 222
           LKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS
Sbjct: 181 LKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 221

BLAST of CmoCh18G009990 vs. ExPASy TrEMBL
Match: A0A6J1H158 (uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC111458628 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-89
Identity = 181/225 (80.44%), Postives = 197/225 (87.56%), Query Frame = 0

Query: 1   MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVE----N 60
           MAD AEEFEPLFDYSRVQP SV CLDDEDSD   S  PFSKR++I N AVT+ V+    +
Sbjct: 1   MADYAEEFEPLFDYSRVQPRSVDCLDDEDSDACMSPEPFSKRSRILNPAVTSLVDGIRKD 60

Query: 61  PFVEIEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEES 120
             VEIED+EEDWLPPPPKVSVDAK+MCGEDSTLK+LRL K ELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVALSAKNLLREVEES 120

Query: 121 ARVDVENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKM 180
           A++DV NTPQ  LEPALDDQ PIASKER KIVISVRDSDKEEL+QFRLF+DDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRLFMDDKFERLFKM 180

Query: 181 YSNKLKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 222
           Y+ K KIDPKSLVF+FDGDKV PDDTP GLGMEDDDMI+VNI+SS
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVSPDDTPTGLGMEDDDMIDVNIRSS 225

BLAST of CmoCh18G009990 vs. ExPASy TrEMBL
Match: A0A6J1JEF8 (uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.8e-88
Identity = 179/225 (79.56%), Postives = 197/225 (87.56%), Query Frame = 0

Query: 1   MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVE-NP-- 60
           MAD AEEFEPLF+YSRV P SV CLD+EDSD   S  PFSKR++I N AVT+ V+ NP  
Sbjct: 1   MADYAEEFEPLFNYSRVHPRSVDCLDEEDSDACMSPEPFSKRSRILNPAVTSLVDGNPKE 60

Query: 61  -FVEIEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEES 120
             VEIED+EEDWLPPPPKVSVDAK+MCGEDSTLK+LRL K ELASV LSAKNLLREVEES
Sbjct: 61  KQVEIEDEEEDWLPPPPKVSVDAKNMCGEDSTLKELRLMKLELASVTLSAKNLLREVEES 120

Query: 121 ARVDVENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKM 180
           A++DV NTPQ  LEPALDDQ PIASKER KIVISVRDSDKEEL+QFR+F+DDKFERLFKM
Sbjct: 121 AKMDVGNTPQDPLEPALDDQIPIASKERAKIVISVRDSDKEELKQFRIFMDDKFERLFKM 180

Query: 181 YSNKLKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 222
           Y+ K KIDPKSLVF+FDGDKVGPDDTPVGLGMEDDDMI+VNI+ S
Sbjct: 181 YAEKRKIDPKSLVFIFDGDKVGPDDTPVGLGMEDDDMIDVNIRPS 225

BLAST of CmoCh18G009990 vs. ExPASy TrEMBL
Match: A0A0A0KWH7 (Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.4e-88
Identity = 182/225 (80.89%), Postives = 196/225 (87.11%), Query Frame = 0

Query: 1   MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVE-NP-- 60
           MADSAEEFEPLFDYSRVQP SVVCLDDEDSD ++S  PF+KR KI N A T+ V  NP  
Sbjct: 1   MADSAEEFEPLFDYSRVQPPSVVCLDDEDSDADKSPAPFTKRAKIVNPAATSSVNGNPKE 60

Query: 61  -FVEIEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEES 120
             VEIEDKEEDWLPPPPKV VDA++   EDSTLK+LRLKKQELASVALSAKNLLREVEES
Sbjct: 61  KQVEIEDKEEDWLPPPPKVLVDAENRHVEDSTLKELRLKKQELASVALSAKNLLREVEES 120

Query: 121 ARVDVENTPQVSLEPALDDQAPIASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKM 180
           A+VDV NT    LEP LD Q P+ASKER KIVISVRDSDKEEL+Q+RLFVDDKFERLFK+
Sbjct: 121 AKVDVGNTSMDPLEPDLDVQTPVASKERAKIVISVRDSDKEELKQYRLFVDDKFERLFKL 180

Query: 181 YSNKLKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 222
           Y++KLKIDPKSLVFVFDGDKVGPDDTP GLGMEDDDMIEVNIKSS
Sbjct: 181 YADKLKIDPKSLVFVFDGDKVGPDDTPGGLGMEDDDMIEVNIKSS 225

BLAST of CmoCh18G009990 vs. TAIR 10
Match: AT1G68185.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 169.5 bits (428), Expect = 3.1e-42
Identity = 100/222 (45.05%), Postives = 140/222 (63.06%), Query Frame = 0

Query: 1   MADSAEEFEPLFDYSRVQPHSVVCLDDEDSDVEESRVPFSKRTKISNSAVTNFVENPFVE 60
           M    E+ EPLFDY RVQP + VC+DD+D D   S  P  K+ K S +      +   +E
Sbjct: 1   MGGEGEDLEPLFDYRRVQPANFVCIDDDDDDA--SVTPIPKKAKTSQTVEKLDDDVKVIE 60

Query: 61  IEDKEEDWLPPPPKVSVDAKDMCGEDSTLKKLRLKKQELASVALSAKNLLREVEESARVD 120
           +   ++DWL PPPKV  D      EDST+K LR KK EL S   +  ++++EVEESA+ +
Sbjct: 61  VTG-DDDWLLPPPKVIFDKSKDSVEDSTIKALRSKKMELMSFTKTVGDVMQEVEESAKRE 120

Query: 121 VENTPQVSLEPALDDQAPI-ASKEREKIVISVRDSDKEELQQFRLFVDDKFERLFKMYSN 180
           VE +   S E A   Q P   + +R KIVI+++D D +  +  R+F D+KFER+ K+Y++
Sbjct: 121 VEESRNPSSETAA--QLPSEPTNDRAKIVITIQDKDGQ--KTLRVFADEKFERVIKLYTD 180

Query: 181 KLKIDPKSLVFVFDGDKVGPDDTPVGLGMEDDDMIEVNIKSS 222
           K K+DP++LVF+FDGDK+ P  TP  LGMED DMIEV+ K +
Sbjct: 181 KAKLDPQNLVFIFDGDKIDPSTTPSELGMEDHDMIEVHTKKT 215

BLAST of CmoCh18G009990 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.5e-04
Identity = 23/69 (33.33%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 147 IVISVRDSDKEELQQFRLFVDDKFERLFKMYSNKLKIDPKSLVFVFDGDKVGPDDTPVGL 206
           I + V++ D +    FR+  D +  ++   YS+K+ ++  +L F+FDG+++  + TP  L
Sbjct: 15  ITVKVKNQD-DICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRIKLNQTPNEL 74

Query: 207 GMEDDDMIE 216
           G+ED+D IE
Sbjct: 75  GLEDEDEIE 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P558532.2e-0540.24Small ubiquitin-related modifier OS=Caenorhabditis elegans OX=6239 GN=smo-1 PE=1... [more]
Match NameE-valueIdentityDescription
A0A6J1G0271.2e-115100.00uncharacterized protein LOC111449468 OS=Cucurbita moschata OX=3662 GN=LOC1114494... [more]
A0A6J1HTX51.2e-10593.21uncharacterized protein LOC111467764 OS=Cucurbita maxima OX=3661 GN=LOC111467764... [more]
A0A6J1H1581.2e-8980.44uncharacterized protein LOC111458628 OS=Cucurbita moschata OX=3662 GN=LOC1114586... [more]
A0A6J1JEF83.8e-8879.56uncharacterized protein LOC111483658 OS=Cucurbita maxima OX=3661 GN=LOC111483658... [more]
A0A0A0KWH78.4e-8880.89Rad60-SLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610500 P... [more]
Match NameE-valueIdentityDescription
AT1G68185.13.1e-4245.05Ubiquitin-like superfamily protein [more]
AT5G55856.12.5e-0433.33Ubiquitin-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022617Rad60/SUMO-like domainPFAMPF11976Rad60-SLDcoord: 147..218
e-value: 1.2E-11
score: 44.2
NoneNo IPR availableGENE3D3.10.20.90coord: 141..216
e-value: 8.5E-20
score: 72.9
NoneNo IPR availablePANTHERPTHR47813UBIQUITIN-LIKE SUPERFAMILY PROTEINcoord: 1..221
NoneNo IPR availableCDDcd01763Ubl_SUMO_likecoord: 146..216
e-value: 5.56067E-21
score: 81.0873
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 135..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G009990.1CmoCh18G009990.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding