CmoCh18G009860 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G009860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionLOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20
LocationCmo_Chr18: 10824206 .. 10824667 (-)
RNA-Seq ExpressionCmoCh18G009860
SyntenyCmoCh18G009860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGAGAAGAATTCATTTGGTGAAGCAATAGAAACCCTAAGATCTAATGGATATTCTTCAATGGCGTTGTTTCTTGAATCTCAGATTTTAAGATTTAGTAATGGTCAGTCCACGATGACAGTCTTTGCTCCTTCAGATGATACATTGGCCGCTCGCATTGATGACTTTACCGATTATCCTTCTCTGTATTGTAGAATCTTATGGAATGATCTTATGGATCTTGAGAAAGGCACGAAGTTATCTACATATTCAAAAGGATTTGCAATTTCCGTTGCGAAATCAAACGGCATATTGATGATCAATGGAGTTGCAGTCATCTATCCTAACATGTATGTGAACGATTGGCTGCTTGTTCATGGCCTCCTGGATGTTTTTTCTATGGCAGAGAGACTCTCAGCAAAGGAATCAGGCTCAGAAATGAGAAACATCACTCATGGGTTGGCACTGGATCATTGGTAA

mRNA sequence

ATGACGGAGAAGAATTCATTTGGTGAAGCAATAGAAACCCTAAGATCTAATGGATATTCTTCAATGGCGTTGTTTCTTGAATCTCAGATTTTAAGATTTAGTAATGGTCAGTCCACGATGACAGTCTTTGCTCCTTCAGATGATACATTGGCCGCTCGCATTGATGACTTTACCGATTATCCTTCTCTGTATTGTAGAATCTTATGGAATGATCTTATGGATCTTGAGAAAGGCACGAAGTTATCTACATATTCAAAAGGATTTGCAATTTCCGTTGCGAAATCAAACGGCATATTGATGATCAATGGAGTTGCAGTCATCTATCCTAACATGTATGTGAACGATTGGCTGCTTGTTCATGGCCTCCTGGATGTTTTTTCTATGGCAGAGAGACTCTCAGCAAAGGAATCAGGCTCAGAAATGAGAAACATCACTCATGGGTTGGCACTGGATCATTGGTAA

Coding sequence (CDS)

ATGACGGAGAAGAATTCATTTGGTGAAGCAATAGAAACCCTAAGATCTAATGGATATTCTTCAATGGCGTTGTTTCTTGAATCTCAGATTTTAAGATTTAGTAATGGTCAGTCCACGATGACAGTCTTTGCTCCTTCAGATGATACATTGGCCGCTCGCATTGATGACTTTACCGATTATCCTTCTCTGTATTGTAGAATCTTATGGAATGATCTTATGGATCTTGAGAAAGGCACGAAGTTATCTACATATTCAAAAGGATTTGCAATTTCCGTTGCGAAATCAAACGGCATATTGATGATCAATGGAGTTGCAGTCATCTATCCTAACATGTATGTGAACGATTGGCTGCTTGTTCATGGCCTCCTGGATGTTTTTTCTATGGCAGAGAGACTCTCAGCAAAGGAATCAGGCTCAGAAATGAGAAACATCACTCATGGGTTGGCACTGGATCATTGGTAA

Protein sequence

MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW
Homology
BLAST of CmoCh18G009860 vs. ExPASy Swiss-Prot
Match: Q9FGW0 (Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=FLA20 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-16
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 0

Query: 5   NSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSL 64
           N F  A   L S G+  +A FL  Q+   ++G  T +TVFAP D+ +      F+DY ++
Sbjct: 255 NIFESASRLLMSRGFVIIATFLALQLEDNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTI 314

Query: 65  Y------CRILWNDLMDLEK-GTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDW 124
           +        +LW DL    K G+ L T  KG+ I ++ S  IL++NGV +IYP++YVNDW
Sbjct: 315 FRGHVVSQLLLWKDLQKFAKEGSILQTVLKGYEIEISLSGDILLLNGVPLIYPDLYVNDW 374

Query: 125 LLVHGLLDVFSMAER 132
           + VHG   +    E+
Sbjct: 375 IAVHGFNQMIVTKEK 389

BLAST of CmoCh18G009860 vs. ExPASy TrEMBL
Match: A0A6J1G1W2 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449908 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.5e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 30  ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFA 89
           ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFA
Sbjct: 137 ILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYCRILWNDLMDLEKGTKLSTYSKGFA 196

Query: 90  ISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLA 149
           ISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLA
Sbjct: 197 ISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLA 256

Query: 150 LDHW 154
           LDHW
Sbjct: 257 LDHW 260

BLAST of CmoCh18G009860 vs. ExPASy TrEMBL
Match: A0A6J1H1S8 (putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111458798 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 9.0e-57
Identity = 112/159 (70.44%), Postives = 135/159 (84.91%), Query Frame = 0

Query: 1   MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDY 60
           +T KN F EAI+TLRSNGYSSMALFLESQI+ F+NGQS MT+FAPSDD LA RID+FTDY
Sbjct: 172 LTFKNPFSEAIKTLRSNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRIDNFTDY 231

Query: 61  PSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVN 120
           PSLY      CRILWNDL +LE+GT+LSTYS+G+ + +AKS+G+L INGVAV YPNMY+N
Sbjct: 232 PSLYFRQILPCRILWNDLANLEEGTELSTYSEGYELYIAKSSGMLRINGVAVFYPNMYLN 291

Query: 121 DWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW 154
           +WL++HGLLDVFS AER+SA+ES SEM    HG+A+DHW
Sbjct: 292 EWLVIHGLLDVFSAAERISAEESDSEM----HGMAMDHW 326

BLAST of CmoCh18G009860 vs. ExPASy TrEMBL
Match: A0A6J1J2F0 (putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111482042 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.8e-55
Identity = 109/156 (69.87%), Postives = 133/156 (85.26%), Query Frame = 0

Query: 4   KNSFGEAIETLRSNGYSSMALFLESQILRFSNGQSTMTVFAPSDDTLAARIDDFTDYPSL 63
           KN FGEAI+TLRSNGYSSMALFLESQI+ F+NGQS MT+FAPSDD LA R+D+FTDYPSL
Sbjct: 175 KNPFGEAIKTLRSNGYSSMALFLESQIIGFNNGQSMMTIFAPSDDALATRVDNFTDYPSL 234

Query: 64  Y------CRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDWL 123
           Y      CRILWNDL++LE+GT+LSTYS+G+ + +AKS+G L INGVAV YPNMY+N+WL
Sbjct: 235 YFRQILPCRILWNDLVNLEEGTELSTYSEGYELYIAKSSGRLRINGVAVFYPNMYLNEWL 294

Query: 124 LVHGLLDVFSMAERLSAKESGSEMRNITHGLALDHW 154
           ++HGLLDVFS AER+SA+ES SE+    HG+A+ HW
Sbjct: 295 VIHGLLDVFSAAERISAEESDSEI----HGMAMYHW 326

BLAST of CmoCh18G009860 vs. ExPASy TrEMBL
Match: A0A6J1HVX4 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111467360 PE=3 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.2e-53
Identity = 108/128 (84.38%), Postives = 116/128 (90.62%), Query Frame = 0

Query: 32  RFSNGQSTMTVFAPSDDTLAARIDDFTDYPSLYC------RILWNDLMDLEKGTKLSTYS 91
           RFSNGQS MTVFAPSDDTLA+RIDDFTDYPSLY       RILWNDL+DL+KGTKLSTYS
Sbjct: 108 RFSNGQSMMTVFAPSDDTLASRIDDFTDYPSLYFRQILPRRILWNDLVDLDKGTKLSTYS 167

Query: 92  KGFAISVAKSNGILMINGVAVIYPNMYVNDWLLVHGLLDVFSMAERLSAKESGSEMRNIT 151
           KG+AISVAKSNG+LMINGVAVIYPNMY+N+WL+VHGLLDVFSMAERLSAKESGSE RN  
Sbjct: 168 KGYAISVAKSNGMLMINGVAVIYPNMYMNEWLVVHGLLDVFSMAERLSAKESGSERRNTP 227

Query: 152 HGLALDHW 154
           HG ALDHW
Sbjct: 228 HGKALDHW 235

BLAST of CmoCh18G009860 vs. ExPASy TrEMBL
Match: A0A0A0KUM5 (FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G611680 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.3e-52
Identity = 111/160 (69.38%), Postives = 131/160 (81.88%), Query Frame = 0

Query: 1   MTEKNSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTD 60
           +T +N FGEAIETLRS+GYSSMALFLESQIL FSNGQS+ MTVFAPSDD L  R+D FTD
Sbjct: 167 LTIRNPFGEAIETLRSHGYSSMALFLESQILGFSNGQSSMMTVFAPSDDALETRVDKFTD 226

Query: 61  YPSLY------CRILWNDLMDLEKGTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYV 120
           YPSLY      CRI WNDL+DLE GT+LSTYS+G+ I V KS+G+L INGVAV YPNMY+
Sbjct: 227 YPSLYFRQISPCRISWNDLVDLEDGTELSTYSEGYTIYVTKSSGMLRINGVAVFYPNMYL 286

Query: 121 NDWLLVHGLLDVFSMAERLSAKESGSEMRNITHGLA-LDH 153
           N+WL+VHGLLDVF +AER+S  ES SEMR+  H ++ +DH
Sbjct: 287 NEWLVVHGLLDVFPVAERISTVESDSEMRSNNHEMSIIDH 326

BLAST of CmoCh18G009860 vs. TAIR 10
Match: AT5G40940.1 (putative fasciclin-like arabinogalactan protein 20 )

HSP 1 Score: 85.5 bits (210), Expect = 4.0e-17
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 0

Query: 5   NSFGEAIETLRSNGYSSMALFLESQILRFSNGQST-MTVFAPSDDTLAARIDDFTDYPSL 64
           N F  A   L S G+  +A FL  Q+   ++G  T +TVFAP D+ +      F+DY ++
Sbjct: 255 NIFESASRLLMSRGFVIIATFLALQLEDNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTI 314

Query: 65  Y------CRILWNDLMDLEK-GTKLSTYSKGFAISVAKSNGILMINGVAVIYPNMYVNDW 124
           +        +LW DL    K G+ L T  KG+ I ++ S  IL++NGV +IYP++YVNDW
Sbjct: 315 FRGHVVSQLLLWKDLQKFAKEGSILQTVLKGYEIEISLSGDILLLNGVPLIYPDLYVNDW 374

Query: 125 LLVHGLLDVFSMAER 132
           + VHG   +    E+
Sbjct: 375 IAVHGFNQMIVTKEK 389

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FGW05.7e-1637.04Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana OX=37... [more]
Match NameE-valueIdentityDescription
A0A6J1G1W24.5e-64100.00LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucur... [more]
A0A6J1H1S89.0e-5770.44putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662... [more]
A0A6J1J2F03.8e-5569.87putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1HVX41.2e-5384.38LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucur... [more]
A0A0A0KUM51.3e-5269.38FAS1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G611680 PE=3 S... [more]
Match NameE-valueIdentityDescription
AT5G40940.14.0e-1737.04putative fasciclin-like arabinogalactan protein 20 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33985OS02G0491300 PROTEIN-RELATEDcoord: 5..146
NoneNo IPR availablePANTHERPTHR33985:SF26FASCICLIN-LIKE ARABINOGALACTAN PROTEINcoord: 5..146
IPR036378FAS1 domain superfamilySUPERFAMILY82153FAS1 domaincoord: 9..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G009860.1CmoCh18G009860.1mRNA