CmoCh18G008500 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G008500
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	cilia- and flagella-associated protein 20
Location	Cmo_Chr18: 9828501 .. 9831348 (+)
RNA-Seq Expression	CmoCh18G008500
Synteny	CmoCh18G008500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCGATAATTAAACAGGTCTGCGATCTTTATCTTGTATCTTTAATCTCTCTGCGGATCGAATTATTCCAATGTCGGCTCTCTTTTTTTTCCATGTTTATACGGCGATGATGTTTTAATTTATGTTGTTCGGCGATTGGATACTGTAAATTTGAGGTTTATCGTCTAGGGTTTTGCTGGGGATTTTATGCTGTTTCTCTATTGCTTGTTTATATCAATGGAAGTTTCTGGTTTTTGGTGAAAAAGAAAGACAATATTTTATAGGGATATTTTAATATTAAGATGGTTCTGTTTCAATGCAGCTTGCGGAGTGTTGCTGATTGTCTTAAAATGTTCAAAAATACGTTTCAATCCGGATTCCTCTCTATTTTATATAGCCTCGGGTATGTTTAGATGTTTTAATGTCAGTGCTTACAGTCTGTCAAGGGTTTTGTTTTTTGAATTCCAGGAACTGATGCTTTGTTTTATTTTATGTATCCTTTTCTATAGGAGCAAACCGCTTCAGATATGGGATAAAGAAGGTGAATCTGTTCATCTACGGACTGTGGTTTTTTATTTGCATTTGGTTAAAGTTTTTTTTGTTTTTTGTCTGTTTGGTGTTTTGAGAACTCTGCTGTGGTTTTATTGGGTGATTTGAAGAAACAATGAAGCCTAGTTGTTCACAATACTATGCAATTTAGTTGTGCTAGTTGACAATAAGAGCATAGTTTGGTCTTTAAAGCATCTACTCCGACCTCGAGTGGAGGTTCAAATTTTCACTCCCACTTTGTTGTTCTAAAAGAAAATTCGGGGTATTGGTGTTAGTTCAAGTTGAGGTTCTAAGTTTTCCTATTAATTTTGGAATGCCATGTGGGAATTGGTATGGATTGTTTCTGAGGTTTAAATCCTATTAAGTGGACAGCTTGCATCAATGAGAAGCCTTTTGTTTTCCATGTTTATTATAGTAGAAACCCTTCAATTGCTACATGTCATTTCATATTGGGTTAAAAAGGTTTTCAGTTTCTGCAATATAACTGTTCTAATAGAGAACAGGATATGTATGTTCGCTACCATTTCAATTTTTGGCCTACTTGTTTAAATAATGGGCGATGAAGAATGTTACTCTGCTAGTCTATCTAGGACTTGTATTCCGTAATTTAGCAATTTTGGGGCATGTGCCATTCATGTTCTTGTGGTGTAGATGTTCTTTGATCTTGTACCTGGGATGTTGTGGGACTGTAAAGTTTTTTTTGAGTACGCTAATGAAGCTTAAGGCTGATATGTTTTGGTGGAAATTTCTAGTTTCTAGAGCTAAAGGAAACATGAAATGTTACCAACTTTTGAAAGCATTTTTTGTATTCTTTTTTGGCAGTTTCTAATGGCCACATCAAACGCCCTCAGGATGAAGACATCCAATCAAACGTTATTGAAATTGTTGGATCAAAACTTCAGTCTACCTATATAACATGCCCAGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACATTTGAGATTCAAGTTCTTGATGATAAGAATGTCAGAAGACGCTTCCGGGCTTCTAATTTTCAAGTGTGTAAGTCTTACCTTTATCTAGCTGCTGTTACTGAAACACTTGTGCACGAATACCACACCCTTAAAAGATAACAACTATTCAATTATTGAATGGCTTTAGTTACCATTGCTTCTATATATGGATATTGTTTGCAGTGACATTTTGCTTGACTAAACTTTTTAATTCTATGAGTTTGGTATAAGATGATGACAATATCCCTTCTATTATGAAGGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCTCTAAGGATGGATGAAGGGTGGAACCATATCCAATTAAATCTGGCTGACTTAACTCGGAGGGCATATGGCACAAATTATGTCGAGACATTACGAGTTCAGGTACATGCAAACTGCCGCTTGAGGAGGATTTACTTTGCAGATCGCTTGTATTCGGAGGAGGAGCTTCCGCCAGAGTTTAAGTTGTACCTTCCTACACAGGTAATTTTTCAATCCATGCAAACCCTTGAACCAGCATTTTGTTTCTCCATTTAAGGGGTTGTTTTTTTGGGATAAATTACAAGTTTAATTCCTTGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATTTGGACCCTAAATTTTTTAAGTGTCTAATAGGTTCCTCAACTTCCAAGTTTGTGTCTAATAAGTATTCAAGTTTTTGTCTGATAAGTCAAAGTTCGTGCCTAATGAGTATTTGAACTTTTAATTTTGTGTTTAATTAACTCTTTGACAAAACTAAAGTTTTTAAAAATACGGAAGTTCATTGATTAAATTTGTAATTTTGAAAGTACAAGAAATTGATAGACTATATTATAATTTAACCATTTTTTTTCTCTTTTCCCTCCATTATTTTCTTGCAGAAAGCTTAACAAGGTTTCTGTCGTAGCAAGCATCAGTGCATCTTGGGGATCTTGAAGTTGTAACTCTTTTCTCCGCTCGAATTACACCCAACCAAAAAGAAAAAAAAAATGAACATCAAGTGTTTTGTTCTATCTAAATTCCTATAGAGCTTAGTGAAGTTGTGGACTTATGTAAACGTGAACAGGGCTAATTGCAGCTCTCTGTTTTAAATGATAATGCAAACGTGAACAGGGCTAATTAGTAACACGTTCATGAGCTTGTTCCTGTTCTTTTGGCTGGACTGTGAGACTTAGTCTAAATTGAATGGTTGTCGGATCTTTTGACGATAAGGATACACTCGTGGTCGTTCGAATCCATTTTAAGAATTTGGTTCAATTGATGACTTGTAAGCAT

mRNA sequence

TTCCCGATAATTAAACAGGTCTGCGATCTTTATCTTGTATCTTTAATCTCTCTGCGGATCGAATTATTCCAATGTCGGCTCTCTTTTTTTTCCATGTTTATACGGCGATGATGTTTTAATTTATGTTGTTCGGCGATTGGATACTGTAAATTTGAGGTTTATCGTCTAGGGTTTTGCTGGGGATTTTATGCTGTTTCTCTATTGCTTGTTTATATCAATGGAAGTTTCTGGTTTTTGGTGAAAAAGAAAGACAATATTTTATAGGGATATTTTAATATTAAGATGGTTCTGTTTCAATGCAGCTTGCGGAGTGTTGCTGATTGTCTTAAAATGTTCAAAAATACGTTTCAATCCGGATTCCTCTCTATTTTATATAGCCTCGGGAGCAAACCGCTTCAGATATGGGATAAAGAAGTTTCTAATGGCCACATCAAACGCCCTCAGGATGAAGACATCCAATCAAACGTTATTGAAATTGTTGGATCAAAACTTCAGTCTACCTATATAACATGCCCAGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACATTTGAGATTCAAGTTCTTGATGATAAGAATGTCAGAAGACGCTTCCGGGCTTCTAATTTTCAAGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCTCTAAGGATGGATGAAGGGTGGAACCATATCCAATTAAATCTGGCTGACTTAACTCGGAGGGCATATGGCACAAATTATGTCGAGACATTACGAGTTCAGGTACATGCAAACTGCCGCTTGAGGAGGATTTACTTTGCAGATCGCTTGTATTCGGAGGAGGAGCTTCCGCCAGAGTTTAAGTTGTACCTTCCTACACAGAAAGCTTAACAAGGTTTCTGTCGTAGCAAGCATCAGTGCATCTTGGGGATCTTGAAGTTGTAACTCTTTTCTCCGCTCGAATTACACCCAACCAAAAAGAAAAAAAAAATGAACATCAAGTGTTTTGTTCTATCTAAATTCCTATAGAGCTTAGTGAAGTTGTGGACTTATGTAAACGTGAACAGGGCTAATTGCAGCTCTCTGTTTTAAATGATAATGCAAACGTGAACAGGGCTAATTAGTAACACGTTCATGAGCTTGTTCCTGTTCTTTTGGCTGGACTGTGAGACTTAGTCTAAATTGAATGGTTGTCGGATCTTTTGACGATAAGGATACACTCGTGGTCGTTCGAATCCATTTTAAGAATTTGGTTCAATTGATGACTTGTAAGCAT

Coding sequence (CDS)

ATGGTTCTGTTTCAATGCAGCTTGCGGAGTGTTGCTGATTGTCTTAAAATGTTCAAAAATACGTTTCAATCCGGATTCCTCTCTATTTTATATAGCCTCGGGAGCAAACCGCTTCAGATATGGGATAAAGAAGTTTCTAATGGCCACATCAAACGCCCTCAGGATGAAGACATCCAATCAAACGTTATTGAAATTGTTGGATCAAAACTTCAGTCTACCTATATAACATGCCCAGCGGACCCAGCTGCTACACTGGGTATAAAATTGCCATTCTTGGTTATAATCGTGAAGAATCTCAAGAAATATTTTACATTTGAGATTCAAGTTCTTGATGATAAGAATGTCAGAAGACGCTTCCGGGCTTCTAATTTTCAAGCTATCACTAGAGTTAAGCCATATATCTGCACCATGCCTCTAAGGATGGATGAAGGGTGGAACCATATCCAATTAAATCTGGCTGACTTAACTCGGAGGGCATATGGCACAAATTATGTCGAGACATTACGAGTTCAGGTACATGCAAACTGCCGCTTGAGGAGGATTTACTTTGCAGATCGCTTGTATTCGGAGGAGGAGCTTCCGCCAGAGTTTAAGTTGTACCTTCCTACACAGAAAGCTTAA

Protein sequence

MVLFQCSLRSVADCLKMFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYITCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICTMPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPEFKLYLPTQKA

Homology

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BLAST of CmoCh18G008500 vs. ExPASy Swiss-Prot
Match: Q9VKV8 (Cilia- and flagella-associated protein 20 OS=Drosophila melanogaster OX=7227 GN=Bug22 PE=2 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.1e-89
Identity = 151/189 (79.89%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSILYS+GSKPLQ+WDK+V NGHIKR  D DIQS V+EIVG+ + +T+IT
Sbjct: 1   MFKNTFQSGFLSILYSIGSKPLQLWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADP  TLGIKLPFLV+I+KN+KKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICT
Sbjct: 61  CPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MP+R+DEGWN IQ NL+D TRRAYGTNYVETLRVQ+HANCR+RR+YF+DRLYSE+ELPPE
Sbjct: 121 MPMRLDEGWNQIQFNLSDFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPPE 180

Query: 197 FKLYLPTQK 206
           FKL+LP QK
Sbjct: 181 FKLFLPIQK 189

[Close]

BLAST of CmoCh18G008500 vs. ExPASy Swiss-Prot
Match: A0CDD4 (Cilia- and flagella-associated protein 20 OS=Paramecium tetraurelia OX=5888 GN=CFAP20 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.0e-88
Identity = 149/189 (78.84%), Postives = 175/189 (92.59%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKN+FQSGFLSILYS+GSKPLQIWDK++ NGHIKR  D+DIQS+V+EI+G+ + + +IT
Sbjct: 1   MFKNSFQSGFLSILYSIGSKPLQIWDKQIKNGHIKRITDQDIQSSVLEIMGTNVSTNFIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
            PADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICT
Sbjct: 61  APADPKETLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MP+R+DEGWN IQ NL+D TRRAYGTNY+ETLRVQ+HANCR+RRIYF+DRLYSEEELPPE
Sbjct: 121 MPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPE 180

Query: 197 FKLYLPTQK 206
           FKL+LP QK
Sbjct: 181 FKLFLPIQK 189

[Close]

BLAST of CmoCh18G008500 vs. ExPASy Swiss-Prot
Match: Q6B857 (Cilia- and flagella-associated protein 20 OS=Bos taurus OX=9913 GN=CFAP20 PE=2 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.4e-88
Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSILYS+GSKPLQIWDK+V NGHIKR  D DIQS V+EI G+ + +TYIT
Sbjct: 1   MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICT
Sbjct: 61  CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MP+R+D+GWN IQ NL+D TRRAYGTNY+ETLRVQ+HANCR+RR+YF+DRLYSE+ELP E
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180

Query: 197 FKLYLPTQ 205
           FKLYLP Q
Sbjct: 181 FKLYLPVQ 188

[Close]

BLAST of CmoCh18G008500 vs. ExPASy Swiss-Prot
Match: Q8BTU1 (Cilia- and flagella-associated protein 20 OS=Mus musculus OX=10090 GN=Cfap20 PE=1 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.4e-88
Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSILYS+GSKPLQIWDK+V NGHIKR  D DIQS V+EI G+ + +TYIT
Sbjct: 1   MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICT
Sbjct: 61  CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MP+R+D+GWN IQ NL+D TRRAYGTNY+ETLRVQ+HANCR+RR+YF+DRLYSE+ELP E
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180

Query: 197 FKLYLPTQ 205
           FKLYLP Q
Sbjct: 181 FKLYLPVQ 188

[Close]

BLAST of CmoCh18G008500 vs. ExPASy Swiss-Prot
Match: Q5ZHP3 (Cilia- and flagella-associated protein 20 OS=Gallus gallus OX=9031 GN=CFAP20 PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.4e-88
Identity = 149/188 (79.26%), Postives = 172/188 (91.49%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLS+LYS+GSKPLQIWDK+V NGHIKR  D DIQS V+EI G+ + +TYIT
Sbjct: 1   MFKNTFQSGFLSVLYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADP  TLGIKLPFLV+I+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICT
Sbjct: 61  CPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MP+R+D+GWN IQ NL+D TRRAYGTNY+ETLRVQ+HANCR+RR+YF+DRLYSE+ELP E
Sbjct: 121 MPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAE 180

Query: 197 FKLYLPTQ 205
           FKLYLP Q
Sbjct: 181 FKLYLPVQ 188

[Close]

BLAST of CmoCh18G008500 vs. ExPASy TrEMBL
Match: A0A6J1FZ95 (cilia- and flagella-associated protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449249 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.9e-104
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT
Sbjct: 1   MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT
Sbjct: 61  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE
Sbjct: 121 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 180

Query: 197 FKLYLPTQKA 207
           FKLYLPTQKA
Sbjct: 181 FKLYLPTQKA 190

[Close]

BLAST of CmoCh18G008500 vs. ExPASy TrEMBL
Match: A0A6J1HPF3 (cilia- and flagella-associated protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111466519 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.7e-103
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSN IEIVGSKLQSTYIT
Sbjct: 1   MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNAIEIVGSKLQSTYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT
Sbjct: 61  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE
Sbjct: 121 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 180

Query: 197 FKLYLPTQKA 207
           FKLYLPTQKA
Sbjct: 181 FKLYLPTQKA 190

[Close]

BLAST of CmoCh18G008500 vs. ExPASy TrEMBL
Match: A0A6J1CFC1 (cilia- and flagella-associated protein 20 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010238 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 186/190 (97.89%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNV+EIVGSK+QSTYIT
Sbjct: 1   MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT
Sbjct: 61  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MPLRMDEGWNHIQLNLAD TRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE
Sbjct: 121 MPLRMDEGWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 180

Query: 197 FKLYLPTQKA 207
           FKLYLPTQ+A
Sbjct: 181 FKLYLPTQRA 190

[Close]

BLAST of CmoCh18G008500 vs. ExPASy TrEMBL
Match: A0A6J1CDI8 (cilia- and flagella-associated protein 20 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010238 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 186/191 (97.38%), Postives = 189/191 (98.95%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKE-VSNGHIKRPQDEDIQSNVIEIVGSKLQSTYI 76
           MFKNTFQSGFLSILYSLGSKPLQIWDKE VSNGHIKRPQDEDIQSNV+EIVGSK+QSTYI
Sbjct: 1   MFKNTFQSGFLSILYSLGSKPLQIWDKEAVSNGHIKRPQDEDIQSNVLEIVGSKIQSTYI 60

Query: 77  TCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYIC 136
           TCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYIC
Sbjct: 61  TCPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYIC 120

Query: 137 TMPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPP 196
           TMPLRMDEGWNHIQLNLAD TRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPP
Sbjct: 121 TMPLRMDEGWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPP 180

Query: 197 EFKLYLPTQKA 207
           EFKLYLPTQ+A
Sbjct: 181 EFKLYLPTQRA 191

[Close]

BLAST of CmoCh18G008500 vs. ExPASy TrEMBL
Match: A0A1S3BH84 (cilia- and flagella-associated protein 20 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489531 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.2e-101
Identity = 182/190 (95.79%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSIL+SLGSKPLQIWDKEVSNGHIKRPQDEDIQSNV+EIVGSK+Q+TYIT
Sbjct: 1   MFKNTFQSGFLSILFSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVLEIVGSKIQATYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPADPA+TLGIKLPFLVIIVKNL KYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT
Sbjct: 61  CPADPASTLGIKLPFLVIIVKNLNKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MPLRMDEGWNHIQLNLAD TRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE
Sbjct: 121 MPLRMDEGWNHIQLNLADFTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 180

Query: 197 FKLYLPTQKA 207
           FKLYLPTQ+A
Sbjct: 181 FKLYLPTQRA 190

[Close]

BLAST of CmoCh18G008500 vs. TAIR 10
Match: AT3G12300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). )

HSP 1 Score: 352.1 bits (902), Expect = 3.1e-97
Identity = 166/190 (87.37%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 17  MFKNTFQSGFLSILYSLGSKPLQIWDKEVSNGHIKRPQDEDIQSNVIEIVGSKLQSTYIT 76
           MFKNTFQSGFLSILYSLGSKPLQIWDKEV +GH+KR  D+DIQSNV+E+VGS +QSTYIT
Sbjct: 1   MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHVKRCHDDDIQSNVLEVVGSNIQSTYIT 60

Query: 77  CPADPAATLGIKLPFLVIIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAITRVKPYICT 136
           CPAD +ATLGIKLPFLV++VK++KKYF+FEIQ+LDDKNVRRRFRASNFQA+TRVKPYICT
Sbjct: 61  CPADLSATLGIKLPFLVLVVKDMKKYFSFEIQILDDKNVRRRFRASNFQAVTRVKPYICT 120

Query: 137 MPLRMDEGWNHIQLNLADLTRRAYGTNYVETLRVQVHANCRLRRIYFADRLYSEEELPPE 196
           MPL+MDEGWN IQLNLADLTRRAYGTNY ETLRVQ+HANCRLRRIYFADRLYSEEELPPE
Sbjct: 121 MPLKMDEGWNQIQLNLADLTRRAYGTNYAETLRVQIHANCRLRRIYFADRLYSEEELPPE 180

Query: 197 FKLYLPTQKA 207
           FKLYLP QKA
Sbjct: 181 FKLYLPVQKA 190

The following BLAST results are available for this feature:

BLAST of CmoCh18G008500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VKV8	3.1e-89	79.89	Cilia- and flagella-associated protein 20 OS=Drosophila melanogaster OX=7227 GN=...	[more]
A0CDD4	2.0e-88	78.84	Cilia- and flagella-associated protein 20 OS=Paramecium tetraurelia OX=5888 GN=C...	[more]
Q6B857	3.4e-88	79.79	Cilia- and flagella-associated protein 20 OS=Bos taurus OX=9913 GN=CFAP20 PE=2 S...	[more]
Q8BTU1	3.4e-88	79.79	Cilia- and flagella-associated protein 20 OS=Mus musculus OX=10090 GN=Cfap20 PE=...	[more]
Q5ZHP3	4.4e-88	79.26	Cilia- and flagella-associated protein 20 OS=Gallus gallus OX=9031 GN=CFAP20 PE=...	[more]

BLAST of CmoCh18G008500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FZ95	5.9e-104	100.00	cilia- and flagella-associated protein 20 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1HPF3	1.7e-103	99.47	cilia- and flagella-associated protein 20 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1CFC1	1.1e-102	97.89	cilia- and flagella-associated protein 20 isoform X2 OS=Momordica charantia OX=3...	[more]
A0A6J1CDI8	2.8e-101	97.38	cilia- and flagella-associated protein 20 isoform X1 OS=Momordica charantia OX=3...	[more]
A0A1S3BH84	6.2e-101	95.79	cilia- and flagella-associated protein 20 isoform X2 OS=Cucumis melo OX=3656 GN=...	[more]

BLAST of CmoCh18G008500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12300.1	3.1e-97	87.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007714	CFA20 domain	PFAM	PF05018	DUF667	coord: 17..200 e-value: 1.6E-89 score: 298.6
IPR040441	Cilia- and flagella-associated protein 20/CFAP20DC	PANTHER	PTHR12458	ORF PROTEIN	coord: 17..205
None	No IPR available	PANTHER	PTHR12458:SF8	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 20	coord: 17..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G008500.1	CmoCh18G008500.1	mRNA