CmoCh18G008410 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G008410
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	F-box/LRR-repeat protein At4g29420
Location	Cmo_Chr18: 9773645 .. 9778160 (-)
RNA-Seq Expression	CmoCh18G008410
Synteny	CmoCh18G008410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTTCGTTAATCGCAATGATTCAATCTCACCGCCAACGAAGAGATGCGTGAATTTATCGCCACAAATTCACAAAATTCATAAACGTTCTTCTGTTTTTCGCCATGGATGATCTTCCGCCTTCGTTAGTTCTCGAAATCCTGAATCGACTGGCCGATTCCGCCGATTTGGCTCGGTGTCGTGTGGCTTCCAAATCTCTTAATGTTCTTTCTCGTGAGGTTAGGTCAGTGAACCTCTTTTGTTCATTGGATCGATATCTCAAGTCTAGGGCTGTGGAGACGAGGTTGTTAGTAATGCCTTTCAAGGTCATATTGAAGAGTCTGATGAACGATTTTGTGGCTCTTGATTCTGTGTCGATCGGTGTGGAGAAGTCACTTGGACGGATTTCGTATGAGCACGACGATGTTGAGGATTGGTCTGATGACTTGTTCTTGACGGATGTTGGTTTCGCTAGGGAATGGCTGCCGGCGATTGGTAGAGGTTTGACTTCCTTGTCGATAGTGGATTTTTGGGTTCAATCATGCTGGAGGCAATCGAAGATTTTGGCGCTAATTACTTTATGCTGTGAGTTTCGCTATCTTATTGCTTTAAAATATCAATTTCTTCATGGAACTACTTACGTTCATCTGAACTTCTAGACGTTTCCACGTCTGGAAGACTGAGAAGTACACGAACCGTTGTTTGAATTGTTGAAAATGTTGGAATTGATTTGCTAGTTCATTATGATCAATAAGAACATGGGATGAAGAAACAGGAAAAAGCAATGGATCGCTGTGAGGACGTAGAGGGTAATCTCCAATAATTCTGTATGTCTTTTACAAAGGAAATATGGGATATTGTGGATGGTTAAGAATTTGTATACAAGATTAAATTAATTCATCAGCTTGAATTTATGGGTTAAACGTTGTTTTAAAATTGCATCATTGCAGAAGGGTACTATATTTGAACTTATGTGATATTATTTCTTCCCCGGTTAATATATTGTCAACTGCTAGAGTTTCCACTCAAGTTCAAGCCCACTAGTGAGGTTGCTAGGATGAATAAAAGACGTAGCTTAAGTTGTAGTGATTTAACTATCATGTCAACTTTGGAAGTGTGGTAGACTATGAAGTATCATGACACGCCATCTGTTGCAAGCCAGTTCTTAAAACTTAGTTATTATTTCCTCTGTTTTGATGGTAATATAATGAAGTTCGTGTTTATGTGGTTTGGTCAAGGCTGAATGAATAGCATAGGTGCACTTGGCTTCCGAAAATGGGAACGATAAGGATGCCAAAAGGGCAACTTCCTGGTGTGTCATCGTGCGATTTTAGAAAGACTGAAATTTGGTTAGTAAAGTCATATGGTTGAAATAATTTGGACAAGAGGAGAAAAACGAGCAGGCTTTATAACCCTCAGAAGGCATTGGCATACTCTCCTTTCTTTATTTTATCGATGTCTCATGGATCAGTTCAAGCACTAAGAAACAATCAATGTTTGGATGGATTTAGGAAAAGAGAGGTTCAATCTTAGAATCAAGCCGAGTATTTGGTATTCTAGACTAATTACTGTTATTGTTGTTTTTCACTTAGAGAACTAACTGTTAAAGAAGGATTCTCGTTTCCGATTAGTTGAACTTTTGGTCGAGTTTTTCATCCAGGTAGATGTAAGATCCATTAATTTGCCTGATACCAGGACCAATTTGTTTCTATTCGTTTGAAGTGACTTTGGTTATCATCTTGGTTCTATTTTCCATTCAAAATATTTCCACGACCTTAAAATTTTCATGTTATTGTCCATTTGTTTGACCTTGACTTGTTTCTTCTTGTAGGTGGCAATCTTCAGGAACTTGAATTGAAGAATGCTTGGTTGTCAGTGGATGGTCTGAATAGATTGAATTCCCTCAAGTGTCTGACCCTAGAATTTATAAGATTAGATGATGAAGATCTGAGCGAGGTTAACTATAACTTCCCTCATCTTGAAATTCTTAATTTGATAGGGGTTGGGGGCCTAAATGAACCAAAAATTCATCTGTCACACCTTAAAACCTGTCGATGGACAGTGTCAAATGCTCCAGTTTCTCTGAGCATATGTGCACCAAGCCTATCAAAACTTGAACTGAAGTGTGTCAAACCAAAATCTCTTATTATCCAAACTCCCATGCTATCTGATTTTCATTTTTGTCTACAAGATGCAAGTGGGTTACAAGTTAATGAATTCCCTTGCTTGAGAAAGCTTCAGCTTCATTTTCCGTGTCTTTACAGTCTCATCACAACATTTTCATCTGCAAGAACTATAAAGGAACTCACTCTCAATACAATGCAACGTGCTGAATCTGTTGAATCTGTTAAGCTTTGCCTTGATACACTGTTTGAAATATTTCCAAATCTTAGCTTTCTTAAATTGGGTCCAGGAGTTTTGTCAGAAGCCGAGACTTGTTATCAAGCTGAAGGTTTGGATGGACGGATAGGGATGAGAGATTTGAAAAAGCTTCATGCTAGCCTTGAAACCTACAAGATTGAGTTAAAACTTCCATTTATCATTCCCATTTTGGAAAAATGTACCGACTCCCTCGATATGGAATTGCTCATCTATCGCAATGCCGATTCTCACCTTGCTGGTGGAATCATGTCAAAACGTGCAGTTAATCATCCAAGACCAAAATGGAGATGGGAACTGTGGAAGGAAGGATTAAAAGAACCGTGGGCTAAAGGGCATTTAAGCTGTCAAGTGTAATTGTCATAGTGGTGGGACAAACTCTTGCTCCTGAAGGTGCAAAGCTTCAAAAGAGGCAAATCCATGTCATTTAAAAACTAAGCCTACCCATCTTTTGAAATTGGCAGACTTATGGGGGTTCTAAAGAACGCCAAAGAACTCAGTAGATCAATGGATGACCCAAAAGCAATCCTACATATGATACCAGGTCTATAAAATTACTTTTTTGATCTTTTATGTTCAGATCTTTGCTCGAAGTCTCCTGTTGATACTTGGTTCGAGAAAAACTGTTGCTGCTGCTGCTGCTGAGCAATTTGAAAAAAGGGTCAGTTCTTTTGCACCTTCATTTTATACTCTACAAGATATCCTTAATAATTGCAATGATCAGTGTGTACATATTTCCAACCAAATAATGACATTTGTTCCCGATACAAGATTGAATGTCTGATGCCTCTTATTTGGATAGAGAAAGATTAGTTTGTACTATAAACTATTTCATTCATTAACCTGAATGCTATTCTCAGTGATTTGGTTGTATGGGGTTTACATACTTGAAAATATTCTTTCAGTGACAGAGCTGGTATTAATTAGATGGTTACACTGCTCATGAAGTCAAGTCACTTTGCCAGAGTTTCAGGTTGCTGTGAGCTCCACCCTTTCGATCAACCTGTAAGGATACTTTCTTACCTCTTTTGATTGAAACTAAAGGGAAAACATGGTTCCAACTAGAATACAACACAGCCCAGCCAATTCAAGAGAGCCGGTAACTTTACACCCTAGAACATTGTTCTAATGCTCATAATAAATGCTCCCCTTCCCCTAACAGATGGATTGTAGCATTCTAAGCCCACCACTAGTAAATATTGTCCTCTTTGAGCTTCTCAATGTTTTTAAAACGCGTCTGTTAGGGAGAGGTTTTCATACCCTTATAAAAAATGTTTTATTCTCCTCCTCAACCGATATGGGATCTCAAAATCCACCCCCTCTTTGGGGCCAGCGTTCTCGCTGGCACTTGTTCCCTTCTCCAATTGATATGGGACCCCTCAATCCACTCCTCTTCAAGGCTCAGCGTCCCTACTGGCACACCGCCTCGTGTCAACCCCCCTTCAGGGCTCAGCCTCCTCGTTGGCACATCGCTCGGTGTGTGGCTCTGATATCATTTGTAATAGCCCAAGCCTACTGCTAACAGATATGGTCTTCTTTGGACTTTCCCGTTTGGGCTTTCCCTCAAGGTTTTTAAAATACCTCTGCTAGGGAGAGGTTTTCACACGCTCGATGTGAGATCTCATAAATATAATCTCACTCCCATGCTCGTCCGTACACACTACTTTCCACTAACGACTTGTCTAGTGGCCTTTTCCCATATCACCCCTCGTAGTGTACATATTACGATTGTGGTTTAACATAAACCCACCAGAAAAAAGGTTGACACTGCTCTGGTCTACTGTGACTCTCAGGGTGCAGCTGTAGAGGGAAGAGATAGGAGTAATCAGATACGTTGACACTGCTCATGATGTCAAATTGTCATGCTGGTTCAGAAATTTTAAGTTCCTGGGTAGGCCAGCCCCTCCATCAATCCAAACACAAAAGGGTTTCATTATTATCATTAAAAGTATTATAATTCAATAGGAATCAGAGATTCGAACCTATGATTCATATGAGATGAGAATGGGACTTCTTCATATCGACAGTTAGTTCTCAATTGTCTATTGTCTACACGATACCTCATTCTGTTCTTGTTGACAGATATCATACTGTTTGATTTCACCAAAGGAGAAATAAGAAATGATACGAGAACAAGAGAGAGGAACATGAATATGAAT

mRNA sequence

TTGTTCGTTAATCGCAATGATTCAATCTCACCGCCAACGAAGAGATGCGTGAATTTATCGCCACAAATTCACAAAATTCATAAACGTTCTTCTGTTTTTCGCCATGGATGATCTTCCGCCTTCGTTAGTTCTCGAAATCCTGAATCGACTGGCCGATTCCGCCGATTTGGCTCGGTGTCGTGTGGCTTCCAAATCTCTTAATGTTCTTTCTCGTGAGGTTAGGTCAGTGAACCTCTTTTGTTCATTGGATCGATATCTCAAGTCTAGGGCTGTGGAGACGAGGTTGTTAGTAATGCCTTTCAAGGTCATATTGAAGAGTCTGATGAACGATTTTGTGGCTCTTGATTCTGTGTCGATCGGTGTGGAGAAGTCACTTGGACGGATTTCGTATGAGCACGACGATGTTGAGGATTGGTCTGATGACTTGTTCTTGACGGATGTTGGTTTCGCTAGGGAATGGCTGCCGGCGATTGGTAGAGGTTTGACTTCCTTGTCGATAGTGGATTTTTGGGTTCAATCATGCTGGAGGCAATCGAAGATTTTGGCGCTAATTACTTTATGCTGTGGCAATCTTCAGGAACTTGAATTGAAGAATGCTTGGTTGTCAGTGGATGGTCTGAATAGATTGAATTCCCTCAAGTGTCTGACCCTAGAATTTATAAGATTAGATGATGAAGATCTGAGCGAGGTTAACTATAACTTCCCTCATCTTGAAATTCTTAATTTGATAGGGGTTGGGGGCCTAAATGAACCAAAAATTCATCTGTCACACCTTAAAACCTGTCGATGGACAGTGTCAAATGCTCCAGTTTCTCTGAGCATATGTGCACCAAGCCTATCAAAACTTGAACTGAAGTGTGTCAAACCAAAATCTCTTATTATCCAAACTCCCATGCTATCTGATTTTCATTTTTGTCTACAAGATGCAAGTGGGTTACAAGTTAATGAATTCCCTTGCTTGAGAAAGCTTCAGCTTCATTTTCCGTGTCTTTACAGTCTCATCACAACATTTTCATCTGCAAGAACTATAAAGGAACTCACTCTCAATACAATGCAACGTGCTGAATCTGTTGAATCTGTTAAGCTTTGCCTTGATACACTGTTTGAAATATTTCCAAATCTTAGCTTTCTTAAATTGGGTCCAGGAGTTTTGTCAGAAGCCGAGACTTGTTATCAAGCTGAAGGTTTGGATGGACGGATAGGGATGAGAGATTTGAAAAAGCTTCATGCTAGCCTTGAAACCTACAAGATTGAGTTAAAACTTCCATTTATCATTCCCATTTTGGAAAAATGTACCGACTCCCTCGATATGGAATTGCTCATCTATCGCAATGCCGATTCTCACCTTGCTGGTGGAATCATGTCAAAACGTGCAGTTAATCATCCAAGACCAAAATGGAGATGGGAACTGTGGAAGGAAGGATTAAAAGAACCGTGGGCTAAAGGGCATTTAAGCTGTCAAGTGTAATTGTCATAGTGGTGGGACAAACTCTTGCTCCTGAAGGTGCAAAGCTTCAAAAGAGGCAAATCCATGTCATTTAAAAACTAAGCCTACCCATCTTTTGAAATTGGCAGACTTATGGGGGTTCTAAAGAACGCCAAAGAACTCAGTAGATCAATGGATGACCCAAAAGCAATCCTACATATGATACCAGGTCTATAAAATTACTTTTTTGATCTTTTATGTTCAGATCTTTGCTCGAAGTCTCCTGTTGATACTTGGTTCGAGAAAAACTGTTGCTGCTGCTGCTGCTGAGCAATTTGAAAAAAGGTGACAGAGCTGGTATTAATTAGATGGTTACACTGCTCATGAAGTCAAGTCACTTTGCCAGAGTTTCAGGTTGCTGTGAGCTCCACCCTTTCGATCAACCTGGTGCAGCTGTAGAGGGAAGAGATAGGAGTAATCAGATACGTTGACACTGCTCATGATGTCAAATTGTCATGCTGGTTCAGAAATTTTAAGTTCCTGGGTAGGCCAGCCCCTCCATCAATCCAAACACAAAAGGGTTTCATTATTATCATTAAAAGTATTATAATTCAATAGGAATCAGAGATTCGAACCTATGATTCATATGAGATGAGAATGGGACTTCTTCATATCGACAGTTAGTTCTCAATTGTCTATTGTCTACACGATACCTCATTCTGTTCTTGTTGACAGATATCATACTGTTTGATTTCACCAAAGGAGAAATAAGAAATGATACGAGAACAAGAGAGAGGAACATGAATATGAAT

Coding sequence (CDS)

ATGGATGATCTTCCGCCTTCGTTAGTTCTCGAAATCCTGAATCGACTGGCCGATTCCGCCGATTTGGCTCGGTGTCGTGTGGCTTCCAAATCTCTTAATGTTCTTTCTCGTGAGGTTAGGTCAGTGAACCTCTTTTGTTCATTGGATCGATATCTCAAGTCTAGGGCTGTGGAGACGAGGTTGTTAGTAATGCCTTTCAAGGTCATATTGAAGAGTCTGATGAACGATTTTGTGGCTCTTGATTCTGTGTCGATCGGTGTGGAGAAGTCACTTGGACGGATTTCGTATGAGCACGACGATGTTGAGGATTGGTCTGATGACTTGTTCTTGACGGATGTTGGTTTCGCTAGGGAATGGCTGCCGGCGATTGGTAGAGGTTTGACTTCCTTGTCGATAGTGGATTTTTGGGTTCAATCATGCTGGAGGCAATCGAAGATTTTGGCGCTAATTACTTTATGCTGTGGCAATCTTCAGGAACTTGAATTGAAGAATGCTTGGTTGTCAGTGGATGGTCTGAATAGATTGAATTCCCTCAAGTGTCTGACCCTAGAATTTATAAGATTAGATGATGAAGATCTGAGCGAGGTTAACTATAACTTCCCTCATCTTGAAATTCTTAATTTGATAGGGGTTGGGGGCCTAAATGAACCAAAAATTCATCTGTCACACCTTAAAACCTGTCGATGGACAGTGTCAAATGCTCCAGTTTCTCTGAGCATATGTGCACCAAGCCTATCAAAACTTGAACTGAAGTGTGTCAAACCAAAATCTCTTATTATCCAAACTCCCATGCTATCTGATTTTCATTTTTGTCTACAAGATGCAAGTGGGTTACAAGTTAATGAATTCCCTTGCTTGAGAAAGCTTCAGCTTCATTTTCCGTGTCTTTACAGTCTCATCACAACATTTTCATCTGCAAGAACTATAAAGGAACTCACTCTCAATACAATGCAACGTGCTGAATCTGTTGAATCTGTTAAGCTTTGCCTTGATACACTGTTTGAAATATTTCCAAATCTTAGCTTTCTTAAATTGGGTCCAGGAGTTTTGTCAGAAGCCGAGACTTGTTATCAAGCTGAAGGTTTGGATGGACGGATAGGGATGAGAGATTTGAAAAAGCTTCATGCTAGCCTTGAAACCTACAAGATTGAGTTAAAACTTCCATTTATCATTCCCATTTTGGAAAAATGTACCGACTCCCTCGATATGGAATTGCTCATCTATCGCAATGCCGATTCTCACCTTGCTGGTGGAATCATGTCAAAACGTGCAGTTAATCATCCAAGACCAAAATGGAGATGGGAACTGTGGAAGGAAGGATTAAAAGAACCGTGGGCTAAAGGGCATTTAAGCTGTCAAGTGTAA

Protein sequence

MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETRLLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWLPAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKCLTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSICAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLITTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAEGLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIMSKRAVNHPRPKWRWELWKEGLKEPWAKGHLSCQV

Homology

[Close]

BLAST of CmoCh18G008410 vs. ExPASy Swiss-Prot
Match: Q9M0E1 (F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana OX=3702 GN=At4g29420 PE=2 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 7.4e-112
Identity = 212/449 (47.22%), Postives = 306/449 (68.15%), Query Frame = 0


Query: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60
           MD+LPP L ++IL+R+ DS  LARCRVASK+LN LSREVR+VNL C+  RYLKSR++   
Sbjct: 1   MDELPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNLICTWSRYLKSRSI--- 60

Query: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120
           ++V PFK I +SL+ +   + S+S+GV+K+L  +S++  + ED S DL+LTDV F +EWL
Sbjct: 61  VVVTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEED-SKDLYLTDVEFVKEWL 120

Query: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180
           P +   L +LSI DFW+QSCWR+S ILALI+  C  L +LE+KNAWLSV GL  + +L+ 
Sbjct: 121 PRVREDLENLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNAWLSVVGLTEMPNLRY 180

Query: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240
           LTLEFIRLDDE+L +VN  FP L+ LNLIGVGGL EP+IH  HLK+C WTVSNAP+SL+I
Sbjct: 181 LTLEFIRLDDENLEKVNDCFPFLQELNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLSLAI 240

Query: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300
            AP+L +L+LKC KPKSL+++TP L   H  ++DA G+   EF  L+ L+L  P +Y LI
Sbjct: 241 VAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMYRLI 300

Query: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360
           +  S    IK+L +++++  E  E ++L L T+ + FP ++ L L P   S+ ET +Q++
Sbjct: 301 SNISFGNKIKKLAVDSVKSIEQSERLELGLATILKAFPGITSLSLSPRTWSDIETHFQSQ 360

Query: 361 -GLDGRIGMRDLKKLHASLET---YKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLA 420
            GL    G   LK++ A ++      +   + FI  I+ K     DM L+I+++ D  + 
Sbjct: 361 GGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDPRVR 420

Query: 421 GGIMSKRAVNHPRPKWRWELWKEGLKEPW 446
             ++S   +++PR +W+W +W EG ++ W
Sbjct: 421 SNLISTCMMSNPRVRWKWGMWAEGGEDMW 445

[Close]

BLAST of CmoCh18G008410 vs. ExPASy TrEMBL
Match: A0A6J1G095 (F-box/LRR-repeat protein At4g29420 OS=Cucurbita moschata OX=3662 GN=LOC111449498 PE=4 SV=1)

HSP 1 Score: 916.4 bits (2367), Expect = 4.8e-263
Identity = 454/454 (100.00%), Postives = 454/454 (100.00%), Query Frame = 0


Query: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60
           MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR
Sbjct: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60

Query: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120
           LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL
Sbjct: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120

Query: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180
           PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC
Sbjct: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180

Query: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240
           LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI
Sbjct: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240

Query: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300
           CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI
Sbjct: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300

Query: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360
           TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE
Sbjct: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360

Query: 361 GLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIM 420
           GLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIM
Sbjct: 361 GLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIM 420

Query: 421 SKRAVNHPRPKWRWELWKEGLKEPWAKGHLSCQV 455
           SKRAVNHPRPKWRWELWKEGLKEPWAKGHLSCQV
Sbjct: 421 SKRAVNHPRPKWRWELWKEGLKEPWAKGHLSCQV 454

[Close]

BLAST of CmoCh18G008410 vs. ExPASy TrEMBL
Match: A0A6J1HNV0 (F-box/LRR-repeat protein At4g29420 OS=Cucurbita maxima OX=3661 GN=LOC111466376 PE=4 SV=1)

HSP 1 Score: 889.8 bits (2298), Expect = 4.8e-255
Identity = 441/448 (98.44%), Postives = 444/448 (99.11%), Query Frame = 0


Query: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60
           MDDLPPSLVLEILNRL+DSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR
Sbjct: 1   MDDLPPSLVLEILNRLSDSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60

Query: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120
           LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL
Sbjct: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120

Query: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180
           PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC
Sbjct: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180

Query: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240
           LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLS LKTCRWTVSNAPVSLSI
Sbjct: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSQLKTCRWTVSNAPVSLSI 240

Query: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300
           CAPSLSKLELKCVKPKSLIIQTPM+SDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI
Sbjct: 241 CAPSLSKLELKCVKPKSLIIQTPMVSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300

Query: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360
           TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGV SEAETCYQAE
Sbjct: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVFSEAETCYQAE 360

Query: 361 GLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIM 420
           GLDGRIGMRDLKK+HASLETYKIELKLPFIIPILEKCTDSL MELLIY NADSHLAGGIM
Sbjct: 361 GLDGRIGMRDLKKIHASLETYKIELKLPFIIPILEKCTDSLGMELLIYHNADSHLAGGIM 420

Query: 421 SKRAVNHPRPKWRWELWKEGLKEPWAKG 449
           SKRAVNHPRPKWRWELWKEGLKEPWAKG
Sbjct: 421 SKRAVNHPRPKWRWELWKEGLKEPWAKG 448

[Close]

BLAST of CmoCh18G008410 vs. ExPASy TrEMBL
Match: A0A5D3CX32 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003230 PE=4 SV=1)

HSP 1 Score: 799.3 bits (2063), Expect = 8.5e-228
Identity = 393/449 (87.53%), Postives = 424/449 (94.43%), Query Frame = 0


Query: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60
           MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSR+VRSVNLFCSLDRYLKSRA ET+
Sbjct: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSRDVRSVNLFCSLDRYLKSRAAETK 60

Query: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120
           LLV PFKVILK+L+NDF+ALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVG+A+EWL
Sbjct: 61  LLVTPFKVILKTLVNDFLALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGYAKEWL 120

Query: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180
           PAIG+ LTSLSIVDFWVQSCWRQSKILALITLCC NL ELELKNAWLSVDGL+R+NSLK 
Sbjct: 121 PAIGKNLTSLSIVDFWVQSCWRQSKILALITLCCCNLLELELKNAWLSVDGLHRMNSLKY 180

Query: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240
           LTLEFIRLDDEDLSE+N NFPHLE+LNLIGVGGLNEPKI L HLKTC+WTVSNAPVSL I
Sbjct: 181 LTLEFIRLDDEDLSELNNNFPHLEVLNLIGVGGLNEPKIRLLHLKTCKWTVSNAPVSLCI 240

Query: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300
            APSLSKLELKCVKPK LII+TPMLSDFHFCL+DASGLQV+EFPCLRKL LHFPCL+SLI
Sbjct: 241 YAPSLSKLELKCVKPKFLIIETPMLSDFHFCLEDASGLQVDEFPCLRKLHLHFPCLHSLI 300

Query: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360
           TTFSSARTIKELTL+TMQRAESVESVK CLDT+FEIFPNL FLKLGPGVLSEAETCYQAE
Sbjct: 301 TTFSSARTIKELTLDTMQRAESVESVKFCLDTVFEIFPNLCFLKLGPGVLSEAETCYQAE 360

Query: 361 GLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIM 420
           GL+GR+GMRDLKK H+SL+T KIELKLPFIIPILEKCTDS DM LL+Y+NADS + GGIM
Sbjct: 361 GLEGRMGMRDLKKNHSSLKTNKIELKLPFIIPILEKCTDSFDMALLLYQNADSDVTGGIM 420

Query: 421 SKRAVNHPRPKWRWELWKEGLKEPWAKGH 450
           SKRA+N  RP+WRWELWK+G +E WAKG+
Sbjct: 421 SKRAINQRRPRWRWELWKQGSREAWAKGN 449

[Close]

BLAST of CmoCh18G008410 vs. ExPASy TrEMBL
Match: A0A1S4DWD1 (F-box/LRR-repeat protein At4g29420 OS=Cucumis melo OX=3656 GN=LOC103488800 PE=4 SV=1)

HSP 1 Score: 799.3 bits (2063), Expect = 8.5e-228
Identity = 393/449 (87.53%), Postives = 424/449 (94.43%), Query Frame = 0


Query: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60
           MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSR+VRSVNLFCSLDRYLKSRA ET+
Sbjct: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSRDVRSVNLFCSLDRYLKSRAAETK 60

Query: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120
           LLV PFKVILK+L+NDF+ALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVG+A+EWL
Sbjct: 61  LLVTPFKVILKTLVNDFLALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGYAKEWL 120

Query: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180
           PAIG+ LTSLSIVDFWVQSCWRQSKILALITLCC NL ELELKNAWLSVDGL+R+NSLK 
Sbjct: 121 PAIGKNLTSLSIVDFWVQSCWRQSKILALITLCCCNLLELELKNAWLSVDGLHRMNSLKY 180

Query: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240
           LTLEFIRLDDEDLSE+N NFPHLE+LNLIGVGGLNEPKI L HLKTC+WTVSNAPVSL I
Sbjct: 181 LTLEFIRLDDEDLSELNNNFPHLEVLNLIGVGGLNEPKIRLLHLKTCKWTVSNAPVSLCI 240

Query: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300
            APSLSKLELKCVKPK LII+TPMLSDFHFCL+DASGLQV+EFPCLRKL LHFPCL+SLI
Sbjct: 241 YAPSLSKLELKCVKPKFLIIETPMLSDFHFCLEDASGLQVDEFPCLRKLHLHFPCLHSLI 300

Query: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360
           TTFSSARTIKELTL+TMQRAESVESVK CLDT+FEIFPNL FLKLGPGVLSEAETCYQAE
Sbjct: 301 TTFSSARTIKELTLDTMQRAESVESVKFCLDTVFEIFPNLCFLKLGPGVLSEAETCYQAE 360

Query: 361 GLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIM 420
           GL+GR+GMRDLKK H+SL+T KIELKLPFIIPILEKCTDS DM LL+Y+NADS + GGIM
Sbjct: 361 GLEGRMGMRDLKKNHSSLKTNKIELKLPFIIPILEKCTDSFDMALLLYQNADSDVTGGIM 420

Query: 421 SKRAVNHPRPKWRWELWKEGLKEPWAKGH 450
           SKRA+N  RP+WRWELWK+G +E WAKG+
Sbjct: 421 SKRAINQRRPRWRWELWKQGSREAWAKGN 449

[Close]

BLAST of CmoCh18G008410 vs. ExPASy TrEMBL
Match: A0A0A0KPS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G581670 PE=4 SV=1)

HSP 1 Score: 777.3 bits (2006), Expect = 3.4e-221
Identity = 384/449 (85.52%), Postives = 420/449 (93.54%), Query Frame = 0


Query: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60
           MDDLPPSLVLEILNRLADSADLARCRVASKS+NVLSR+VRSVNLFCSLDRYLKSRA ET+
Sbjct: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSINVLSRDVRSVNLFCSLDRYLKSRAAETK 60

Query: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120
           LLV PFKVILK+L+N+F+ALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVG+A+EWL
Sbjct: 61  LLVTPFKVILKTLVNEFLALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGYAKEWL 120

Query: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180
           P+IG+ LTSLSIVDFWVQSCWRQSKILALITL C NL ELELKNAWLSVDGL+R+NSLK 
Sbjct: 121 PSIGKNLTSLSIVDFWVQSCWRQSKILALITLYCCNLLELELKNAWLSVDGLHRMNSLKY 180

Query: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240
           LTLEFIRLDDEDLSE+N NFPHLE+LNLIGVGGLNEPKI L HLKTC+WTVSNAPVSL I
Sbjct: 181 LTLEFIRLDDEDLSELNNNFPHLEVLNLIGVGGLNEPKIRLLHLKTCKWTVSNAPVSLCI 240

Query: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300
            APSLSKLELKCVKPK LII+TPMLSDFHFCL+DASGLQV+EFPCLRKL LHFP L+SLI
Sbjct: 241 YAPSLSKLELKCVKPKFLIIETPMLSDFHFCLEDASGLQVDEFPCLRKLHLHFPRLHSLI 300

Query: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360
           TTFSSART+KELTL+TMQRAES+ESVK CLDT+FEIFPNLSFLKLGPGVL EAET YQAE
Sbjct: 301 TTFSSARTLKELTLDTMQRAESIESVKFCLDTVFEIFPNLSFLKLGPGVLLEAETFYQAE 360

Query: 361 GLDGRIGMRDLKKLHASLETYKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLAGGIM 420
           GL+GR+GMRDLKK  ++L+T KIELKLPFII ILEKCTDS DM LL+Y+NADS + GGIM
Sbjct: 361 GLEGRMGMRDLKKNLSNLKTNKIELKLPFIISILEKCTDSFDMTLLLYQNADSDITGGIM 420

Query: 421 SKRAVNHPRPKWRWELWKEGLKEPWAKGH 450
           SKRA+NH RP+WRWELWKEG +E WAKG+
Sbjct: 421 SKRAINHRRPRWRWELWKEGSREAWAKGN 449

[Close]

BLAST of CmoCh18G008410 vs. TAIR 10
Match: AT4G29420.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 405.6 bits (1041), Expect = 5.2e-113
Identity = 212/449 (47.22%), Postives = 306/449 (68.15%), Query Frame = 0


Query: 1   MDDLPPSLVLEILNRLADSADLARCRVASKSLNVLSREVRSVNLFCSLDRYLKSRAVETR 60
           MD+LPP L ++IL+R+ DS  LARCRVASK+LN LSREVR+VNL C+  RYLKSR++   
Sbjct: 1   MDELPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNLICTWSRYLKSRSI--- 60

Query: 61  LLVMPFKVILKSLMNDFVALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGFAREWL 120
           ++V PFK I +SL+ +   + S+S+GV+K+L  +S++  + ED S DL+LTDV F +EWL
Sbjct: 61  VVVTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEED-SKDLYLTDVEFVKEWL 120

Query: 121 PAIGRGLTSLSIVDFWVQSCWRQSKILALITLCCGNLQELELKNAWLSVDGLNRLNSLKC 180
           P +   L +LSI DFW+QSCWR+S ILALI+  C  L +LE+KNAWLSV GL  + +L+ 
Sbjct: 121 PRVREDLENLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNAWLSVVGLTEMPNLRY 180

Query: 181 LTLEFIRLDDEDLSEVNYNFPHLEILNLIGVGGLNEPKIHLSHLKTCRWTVSNAPVSLSI 240
           LTLEFIRLDDE+L +VN  FP L+ LNLIGVGGL EP+IH  HLK+C WTVSNAP+SL+I
Sbjct: 181 LTLEFIRLDDENLEKVNDCFPFLQELNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLSLAI 240

Query: 241 CAPSLSKLELKCVKPKSLIIQTPMLSDFHFCLQDASGLQVNEFPCLRKLQLHFPCLYSLI 300
            AP+L +L+LKC KPKSL+++TP L   H  ++DA G+   EF  L+ L+L  P +Y LI
Sbjct: 241 VAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMYRLI 300

Query: 301 TTFSSARTIKELTLNTMQRAESVESVKLCLDTLFEIFPNLSFLKLGPGVLSEAETCYQAE 360
           +  S    IK+L +++++  E  E ++L L T+ + FP ++ L L P   S+ ET +Q++
Sbjct: 301 SNISFGNKIKKLAVDSVKSIEQSERLELGLATILKAFPGITSLSLSPRTWSDIETHFQSQ 360

Query: 361 -GLDGRIGMRDLKKLHASLET---YKIELKLPFIIPILEKCTDSLDMELLIYRNADSHLA 420
            GL    G   LK++ A ++      +   + FI  I+ K     DM L+I+++ D  + 
Sbjct: 361 GGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDPRVR 420

Query: 421 GGIMSKRAVNHPRPKWRWELWKEGLKEPW 446
             ++S   +++PR +W+W +W EG ++ W
Sbjct: 421 SNLISTCMMSNPRVRWKWGMWAEGGEDMW 445

The following BLAST results are available for this feature:

BLAST of CmoCh18G008410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E1	7.4e-112	47.22	F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana OX=3702 GN=At4g29420 ...	[more]

BLAST of CmoCh18G008410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G095	4.8e-263	100.00	F-box/LRR-repeat protein At4g29420 OS=Cucurbita moschata OX=3662 GN=LOC111449498...	[more]
A0A6J1HNV0	4.8e-255	98.44	F-box/LRR-repeat protein At4g29420 OS=Cucurbita maxima OX=3661 GN=LOC111466376 P...	[more]
A0A5D3CX32	8.5e-228	87.53	F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4DWD1	8.5e-228	87.53	F-box/LRR-repeat protein At4g29420 OS=Cucumis melo OX=3656 GN=LOC103488800 PE=4 ...	[more]
A0A0A0KPS5	3.4e-221	85.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G581670 PE=4 SV=1	[more]

BLAST of CmoCh18G008410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29420.1	5.2e-113	47.22	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 63..414 e-value: 1.8E-10 score: 41.7
IPR044809	F-box protein AUF1-like	PANTHER	PTHR31215	OS05G0510400 PROTEIN-RELATED	coord: 2..446
None	No IPR available	PANTHER	PTHR31215:SF23	OS01G0193500 PROTEIN	coord: 2..446
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 110..347
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G008410.1	CmoCh18G008410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding