CmoCh18G007200 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G007200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
LocationCmo_Chr18: 8999547 .. 9000597 (-)
RNA-Seq ExpressionCmoCh18G007200
SyntenyCmoCh18G007200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGAACCTCTTCAAGTAGGATGTCCTTCGGAAGAACCTCTAAATCCGTTAACGTTATTTAAGCCACAACATCCGGAGAGGGACCTTATCATTTCAGTTACCCACCACTGCTACAACTATTTCCCTGCCAATGACACGCACCACTCTAGGAAAAGGTACGTCTGTAAACTAGTATCAACAGTTGGTTTATCTTTTGAGACATCTTTATAACTTAGGCAAGTAAGGAAGGGAGCGAGGCATTTTAGTGTTCACACAGCACATTTTTACATTGATATGAATTTTCAAGACATGACCATCACCACACTCCATTCTTTAACCATGACTCCCTTCTTTCCAACCCCATCTCCATCTCCACTTGTAACAGCTCAAGTCCACTGCCGACTGCCGACAGATATTGTCCTTTTTAGACTTTTCCTTTCGAGGTTTCCCGCAATAAAACGCATCTGCTAGGGAGGAGCTTTCATACCTATATAAAGAATGTTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACACCATCCCTCCGATAAAAAAATTAGCTAAAGGCAACTCCAAAGAATGTATAGTTTGATCCTATTTATGGGGATTCCGTAAATATTCCATTCCAAAAAGAGAAAGTTCGAAACAATTGGGATTTTTTTGGAGATTGGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCCTCGATGGAAGTTTTATTTTCTCAGAATGTATCCTAATTTTTTGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTCCATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCGGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACTCTATGTATTCCTCTATCCGTAGAGTACAT

mRNA sequence

GACGAACCTCTTCAAGTAGGATGTCCTTCGGAAGAACCTCTAAATCCGTTAACGTTATTTAAGCCACAACATCCGGAGAGGGACCTTATCATTTCAGTTACCCACCACTGCTACAACTATTTCCCTGCCAATGACACGCACCACTCTAGGAAAAGTTTTATTTTCTCAGAATGTATCCTAATTTTTTGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTCCATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCGGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACTCTATGTATTCCTCTATCCGTAGAGTACAT

Coding sequence (CDS)

GACGAACCTCTTCAAGTAGGATGTCCTTCGGAAGAACCTCTAAATCCGTTAACGTTATTTAAGCCACAACATCCGGAGAGGGACCTTATCATTTCAGTTACCCACCACTGCTACAACTATTTCCCTGCCAATGACACGCACCACTCTAGGAAAAGTTTTATTTTCTCAGAATGTATCCTAATTTTTTGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTCCATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCGGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACTCTATGTATTCCTCTATCCGTAGAGTACAT

Protein sequence

DEPLQVGCPSEEPLNPLTLFKPQHPERDLIISVTHHCYNYFPANDTHHSRKSFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSGNFQTNNFNEIFQFLILLCSTLCIPLSVEYSMYSSIRRVH
Homology
[Close]
BLAST of CmoCh18G007200 vs. ExPASy Swiss-Prot
Match: P0CC38 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIF LILLLMIDSTSDQKDIPWLY ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

[Close]
BLAST of CmoCh18G007200 vs. ExPASy Swiss-Prot
Match: P0CC44 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Chloranthus spicatus OX=13006 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIF LILLLMIDSTSDQKDIPWLY ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

[Close]
BLAST of CmoCh18G007200 vs. ExPASy Swiss-Prot
Match: P0CC46 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIF LILLLMIDSTSDQKDIPWLY ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

[Close]
BLAST of CmoCh18G007200 vs. ExPASy Swiss-Prot
Match: P0CC50 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIF LILLLMIDSTSDQKDIPWLY ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

[Close]
BLAST of CmoCh18G007200 vs. ExPASy Swiss-Prot
Match: P0CC58 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Drimys granadensis OX=224735 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-41
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIF LILLLMIDSTSDQKDIPWLY ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SFIFPECILIFGLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

[Close]
BLAST of CmoCh18G007200 vs. ExPASy TrEMBL
Match: A0A7G9XJ24 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Gonystylus affinis OX=1853235 GN=ndhB PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 7.5e-40
Identity = 87/89 (97.75%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIFCLILLLMIDSTSDQKDIPWLY ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SFIFPECILIFCLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

[Close]
BLAST of CmoCh18G007200 vs. ExPASy TrEMBL
Match: A0A7H1CPE4 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Edgeworthia chrysantha OX=142181 GN=ndhB PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.9e-39
Identity = 86/89 (96.63%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           S IF ECILIFCLILLLMIDSTSDQKDIPWLY ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SVIFPECILIFCLILLLMIDSTSDQKDIPWLYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

[Close]
BLAST of CmoCh18G007200 vs. ExPASy TrEMBL
Match: A0A1S5QKM1 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Pachycladon fastigiatum OX=106774 GN=ndhB PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.4e-39
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIFCLILLLMIDSTSDQKDIPWLY ISSTS VMSITALLFRWREEP+ISFSG
Sbjct: 12  SFIFPECILIFCLILLLMIDSTSDQKDIPWLYFISSTSFVMSITALLFRWREEPIISFSG 71

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 72  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 100

[Close]
BLAST of CmoCh18G007200 vs. ExPASy TrEMBL
Match: J7HSI8 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Pachycladon enysii OX=414717 GN=ndhB PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.4e-39
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIFCLILLLMIDSTSDQKDIPWLY ISSTS VMSITALLFRWREEP+ISFSG
Sbjct: 12  SFIFPECILIFCLILLLMIDSTSDQKDIPWLYFISSTSFVMSITALLFRWREEPIISFSG 71

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 72  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 100

[Close]
BLAST of CmoCh18G007200 vs. ExPASy TrEMBL
Match: A0A6C0WX36 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Rheum nobile OX=137697 GN=ndhB PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.1e-38
Identity = 85/89 (95.51%), Postives = 85/89 (95.51%), Query Frame = 0 

Query: 52  SFIFSECILIFCLILLLMIDSTSDQKDIPWLYSISSTSLVMSITALLFRWREEPMISFSG 111
           SFIF ECILIFCLILLLMID TSDQKDIPW Y ISSTSLVMSITALLFRWREEPMISFSG
Sbjct: 30  SFIFPECILIFCLILLLMIDLTSDQKDIPWFYFISSTSLVMSITALLFRWREEPMISFSG 89

Query: 112 NFQTNNFNEIFQFLILLCSTLCIPLSVEY 141
           NFQTNNFNEIFQFLILLCSTLCIPLSVEY
Sbjct: 90  NFQTNNFNEIFQFLILLCSTLCIPLSVEY 118

The following BLAST results are available for this feature:
BLAST of CmoCh18G007200 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0CC385.0e-4196.63NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Calycanthus floridu... [more]
P0CC445.0e-4196.63NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Chloranthus spicatu... [more]
P0CC465.0e-4196.63NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Citrus sinensis OX=... [more]
P0CC505.0e-4196.63NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=... [more]
P0CC585.0e-4196.63NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Drimys granadensis ... [more]
BLAST of CmoCh18G007200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7G9XJ247.5e-4097.75NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Gonystylus affinis OX... [more]
A0A7H1CPE44.9e-3996.63NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Edgeworthia chrysanth... [more]
A0A1S5QKM16.4e-3995.51NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Pachycladon fastigiat... [more]
J7HSI86.4e-3995.51NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Pachycladon enysii OX... [more]
A0A6C0WX361.1e-3895.51NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Rheum nobile OX=13769... [more]
BLAST of CmoCh18G007200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 50..141
NoneNo IPR availablePANTHERPTHR22773:SF105NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 B, CHLOROPLASTICcoord: 50..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G007200.1CmoCh18G007200.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042773 ATP synthesis coupled electron transport
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding