CmoCh18G006950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G006950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Nup54 domain-containing protein
Location	Cmo_Chr18: 8821070 .. 8826350 (+)
RNA-Seq Expression	CmoCh18G006950
Synteny	CmoCh18G006950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGAGCTCAACTCTCCTCCTCCGCCTTCGGCACTCCGCAGTCAACTCCGGCCTTCGGCACTCCGCAGTCAACTCCGGCCTTCGGTACTCCACAATCAACTCCGGCCTTCGGTACTCCACAATCAACTCCGGCCTTTGGTACTCCACAATCAACTCCGGCCTTCGGAACTCCATCGGCATCCCCCGCGTTTGGAAACTTTTCATCAACTCCTGCTTTTGGAACTCCATCTTCGTCGTCTTTTGCTACCGGCTTCGGCTCGTCTCTTTTCTCCACTCCTTTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGCAATCGCCGTTGTTTCAGCTACCAGCAGCTACAGGATTCGGTTTCCAGACTCCGTTTGCAGCGCCTCAGTCCAGTCCATTTCCAAATGCTCAATTGACCACCCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCATGGCAGATCGAGATATTCAAGTACGTTTCTGAAAGTAACTGGCAAGAACTAGCAATATCTCCTTTCTCCTTCTGTGTCTGCGCCATTTATTTTGTTTTTATTGTCTGCATCAGGCAATTGTTGAGGCTTACAAGGACGACGCAGGAAACCCTAAGTATGCCTTCAAGGTTTGTATTCCTGTTCTCGACTGGAATCGTAGTGCCTTTGTGTTTTTACCCTCGCTTACACATGAGAATTGATAATCGTGAGGAAAAATATTATAAACTTTCTTTTAAGTTCTAGAAAGTTGTGTATTCATCATTTCCAGTTGCTAGGAAGTTGATATTTGTGTTTATTTTGCAGCGTTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAACCTGCTGGTGTGTCGGATGTGAGTTCCGTATATCGTGTTTCTACGTCTGAAGAACTTTCATGTTTGTATGTCTTTTTTTCATCGGATTCTACACTAAGTACGGATAATAGTTTGCATTGCCAGATAATGTGGGCTGAGGCTATGGCAAAACTTGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCACAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGATTGAAGGTATTTCAATTTACTGCGAAATGTGTTGCGAAATTCTTTGATTATATTTTAAAATATTTGTCTCAGCGCTTGAAACTTGTGTATGTCCTCAATATCTTTGCATATTTGATTGTGCTCTATGAGTTTTAGCATATTTTTTGTTACAGCATCAAACTTTTTGTAGTTATTTCCATCAACGATGATGGATTTGCAGGCGTGTTCTTAAGCAATGTTAACCATATACATATAAATTTGAACCTGCGTCATGGATCTGATTAGATACTTAGGGTTCTTAAGGTGGCTGATCCAAAGTTACATCTGAGAGATTGTACTGATGGATGCAATTATATTTCTAGTTCACCTTTTTCACTGTATTAAGGATTCATTTTATTTCGAACTCAATGATTAATTAAGAAAAACGATAGGTTTGAAATAAATATATAGTTCGATGATTATACGTTCCCTTAAAAAATTATTTTGATAACCTTTAACATAAATAAAACTTATTTAAGATAATCATGTTTGGACTTACTGAATGGCTAAACTTGACCTAAAATTTTATAGTTTATTTAAATACACAAGATTTCATTTTCTTTAAAGTAAATTTATACTTTCGGTTATAGTGAAAAAAATTAAATTCATGATAACCGTACACATTAAAGTGTAAGCATTATTCAAAAATAAAATTCTAATAGCAAGCAAGATTGTCCTAATGTGCTTATATATAACTTTTTCCTCATAAATATCAGTAAGATTCAAAATGTCGCTAAGGTATTGCCTCCGTTGTGCCTGTACTGTATCTATCCCTTTTGGATGTTAATTGTTGTGACAAGTTCTGGTCCTTGTGTAATTGACATTCAAAACTGTTAAGTAGGAAAACACAAGTTATGTTTGATAGGATGCCAATTATGTTTATTTAATCCATCAATGTTGGTGGAACAAATGCAATAGCTTAGTGACTGGTTTTTTGTTTCCATTCAAGATTATTAGTATGTTCTTGGATAAGTACGATTATCTTTATGTTCAAGTTGCAGGGCATATGTAAATTGGAAATATCCATGGTATATCAATATTGCGTGTGCTGAAAGTGCTGTGCCATATTAGCTTCTGCGTGTGCTTCCAGCATGCCTTGTGAAAGTTTTTTATTCCAATTGAAATGTTCTTAAAAGTTGTCAAATACTGAATCTGTTTTGTTTCTGTCACTGTTTATAAAAATATTTTTAACATCTGAAAATATCTTAAAAGAGTAATATTTGTGCAACCCATTTTAAGTGTATTATCCTTTTCACACGTCCTCGTGTTTGCTGAGTGAAGCAGCCTGGTTTGTTGCACTGACACTTCTGGGGTTAATACAGATTCAAGATGAAGTCATTCTTTCTGATGCTGAGAGACTGCGGATGACCCAAAGCAATGTCAAAACGGTAATCTGATGCTTCCTTGAGGATAAATTTTTTTAATTTCTTTTTTTTAATTGACAATTGATTTATACAGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGATCCAAAGATTGAAACAGAAGGAGCAAGGTCTTCAAAGGCGTCTTTTGAGAGTATGTATTATTTTTTATAATCAGTGGGCCAAAAAGAAAAAAGAATGATAAGGATGTGATCTTCATGTTTTCCTTCCCTCCGCCCCACCCAACACACACGCACACACAAAATGTTCATAATGCTACTGATGCCAAAGTGCTTCTATTTTATATTTTCCCTTTTGTTCGATTAAAGATGATGAGAGTCGTGGAGGCGCTAGAAAGTAAGGGTTGCCGAGTGCCTATAATGACAGGGGAGGCTGAATTGGCTGAGAGGTTAGCTTTGATAACAAGACAGGTAGGTATCCTTCCCCCCCTTTTACCTCAATTTCAAAAACTGAAAATATCCATGCAGGGAATTCGCAGCGCATTTCCATAGTTGAATCAAATTCAACTTTATCCTCATTGTTAAACATGTAAATTATTGCAAAATTTAAATAACTTGATAAAATTTTCAATTATCATTCTGCAAAAAGAAACAGACTGAAATTTTAGAATCAGTGCTTTAATTTTTCTTTCTAAAGAACATCGTATTTACATTATCTTTTATTGCCTTTTAATGTTTACTATAATATGATATTATTGTCTACCATTATAATATACCTTAAAAATGAACTTATTTTCCATGTAGGAGGGCAAGTTGTCTTCTTCTTTATCAAGTCAATGGGGGGATAAACTAGAATTAAAATTTTAACTAGGGGAAAATATGTTACTTACCCAAAAAGTTGTTTATCGTAATGAGATTCTTGGACATGTTTCAGTTGAGAGGATCTGGAGCAGAGCTTTCGAGGAGGGTGAAAAATTTGCTTACAATTACTTGTGGTCAAGCAAATGGCTCTGGTGCTGGTAATTCTATCTATCTTCAAGGTTCGACAAAAATACATGAACAGAGTCTTGCTGATATGCAGGAGGTGCGTATATGTGTTTGGAGTCTGCTTTTTCACTCGAAGTTTTGCTGAAAATAAACATAATGAGGCTTACCTAAATTGTGTTGACAGTCTTTCAAAAATAAAAGAAAAAAGTGGTATAATTATTTGTTAGTGAGAATTTTGTTAAATGCAGTTATTTTATTGTCTGATTTATTAACCAACATCATCTACATGTCGAGTGGCAGGTATTGCAGCAGCAGACTGAGGCCATTGCTAGACTTGGAACTGTTTTAAAGCGAGATGTTAGAGACATGGAAATTATAATGGCTGAAGACAAAGAGATGATAGATGATTTGAGTTAAAAGGAATTGAGTTCACATTTCTAGCCGATTTTCTGTTTTGTTATTGATATATTTGCTTTGAATTTTCCAAAAGGAAAAATTAAAATCTGATTTCAAATGTTTTATATGCTGCCCAAGTTATTCGTCTAGTGCTGGCCGACATCTCTTCAGAGAGCCTGGGTTAGTACTTTGTTAAGATGTGGTCAATCTGAAATGCTTAATACCTATTCGATTTTGATTCGATGCAGGGTTAAGGGCTGAGCTGTAATTGAGTGATAAGGCAGCATGAACAGTTGCTATGTTGGTCGCTTAGCGTAGTCGACATCAGCAAGGTATTGGATTCATGAAAAAACCTTTAAAATCTTGGCATTTGGATGATATACCTCTTTTTTTTATAAAAGCCTATGCTAGGAAGAAGGATTTGTGGCTTCTTAAACTTTAGTTGTGTATAGTTTATAGTTAGATATGTTTATTTTGAGTAACCCCTTAAGGTCACGTATATATGTGAAAAGGTTAGACATGCCATCCCATAGAAATTTTTTTCGAGGCCACAAACTAGACGAAAAGGTTTGGGGCAAAATTTAGAGAGATGTAATATCACGAAATGGCTAGGTAAGCACCACAAGTAGGCCTAGGCTATTTCTTTGCAAAATTGTGCTCAATCTCATACGTGGCAACCAGATCTCTTCTTTAGTTGGGGGAAGAATCGGATTTTTGAGGAACCTATTAAGAAAATTAGATTTGGTTAGACAATGCGTGTAGTTGGTAAACCAAGATATTGAATATTTGACAAAAATATTCAATATGATTCGAAGGATACATATTTGGTGTCGGATTTGCTTATTAAAGCTTACCGAGGTTGCAAAGAAAGAAATATTATAGAGATTAGAGTGAGGGAAGGTAGAAATTGGAGGGGGTTATGCTACTATTGCTAGAGAAACAAATGTTAATATAGAAAGGGAAATGGAAATTTTGAAAGGCAACTGCGAAATATTATTAAGTTTTGAGATTTTGAATGATGAAATTATGTTCTTCGCACTTTTGGTTCGTTGGATAATGTTTTTATTTAAATTTTCTATTTCTTAAAATTAGGTTTGTTTTAGTATGGTGTATTGTTTACCTTTCAAAGGAGAGGTGTACTTTGTTCGAGAGGGGCATCGGCTAATTTAGAGAATGATCATGTTTTTATAATTAAATAATACTATTTTCATAGATAAGAGGTCTTTTGAGGAAGTTTGAGCTTATGCTCAAAGTGAACGAGCAAGAGCAATATCATACCATTGTAGAAGTTGGGTTTATCTAACAATTTCCATTGGGTTTATCTAACAATTTCCATATTTTATTAAGGGATATGACTGAAAATTTTCAAACTACATGGCATAAATTTCTACTTTCCTCATTCATTACTGCAAAATATAAAACGAAAACAAATTATACCACAAAGATCAGAGAAGGAGAAGAACAAC

mRNA sequence

ATGTTCGGAGCTCAACTCTCCTCCTCCGCCTTCGGCACTCCGCAGTCAACTCCGGCCTTCGGCACTCCGCAGTCAACTCCGGCCTTCGGTACTCCACAATCAACTCCGGCCTTCGGTACTCCACAATCAACTCCGGCCTTTGGTACTCCACAATCAACTCCGGCCTTCGGAACTCCATCGGCATCCCCCGCGTTTGGAAACTTTTCATCAACTCCTGCTTTTGGAACTCCATCTTCGTCGTCTTTTGCTACCGGCTTCGGCTCGTCTCTTTTCTCCACTCCTTTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGCAATCGCCGTTGTTTCAGCTACCAGCAGCTACAGGATTCGGTTTCCAGACTCCGTTTGCAGCGCCTCAGTCCAGTCCATTTCCAAATGCTCAATTGACCACCCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCATGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAAGGACGACGCAGGAAACCCTAAGTATGCCTTCAAGCGTTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAACCTGCTGGTGTGTCGGATATAATGTGGGCTGAGGCTATGGCAAAACTTGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCACAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGATTGAAGATTCAAGATGAAGTCATTCTTTCTGATGCTGAGAGACTGCGGATGACCCAAAGCAATGTCAAAACGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGATCCAAAGATTGAAACAGAAGGAGCAAGGTCTTCAAAGGCGTCTTTTGAGAATGATGAGAGTCGTGGAGGCGCTAGAAAGTAAGGGTTGCCGAGTGCCTATAATGACAGGGGAGGCTGAATTGGCTGAGAGGTTAGCTTTGATAACAAGACAGTTGAGAGGATCTGGAGCAGAGCTTTCGAGGAGGGTGAAAAATTTGCTTACAATTACTTGTGGTCAAGCAAATGGCTCTGGTGCTGGTAATTCTATCTATCTTCAAGGTTCGACAAAAATACATGAACAGAGTCTTGCTGATATGCAGGAGGTATTGCAGCAGCAGACTGAGGCCATTGCTAGACTTGGAACTGTTTTAAAGCGAGATGTTAGAGACATGGAAATTATAATGGCTGAAGACAAAGAGATGATAGATGATTTGAGTTAAAAGGAATTGAGTTCACATTTCTAGCCGATTTTCTGTTTTGTTATTGATATATTTGCTTTGAATTTTCCAAAAGGAAAAATTAAAATCTGATTTCAAATGTTTTATATGCTGCCCAAGTTATTCGTCTAGTGCTGGCCGACATCTCTTCAGAGAGCCTGGGTTAGTACTTTGTTAAGATGTGGTCAATCTGAAATGCTTAATACCTATTCGATTTTGATTCGATGCAGGGTTAAGGGCTGAGCTGTAATTGAGTGATAAGGCAGCATGAACAGTTGCTATGTTGGTCGCTTAGCGTAGTCGACATCAGCAAGGTATTGGATTCATGAAAAAACCTTTAAAATCTTGGCATTTGGATGATATACCTCTTTTTTTTATAAAAGCCTATGCTAGGAAGAAGGATTTGTGGCTTCTTAAACTTTAGTTGTGTATAGTTTATAGTTAGATATGTTTATTTTGAGTAACCCCTTAAGGTCACGTATATATGTGAAAAGGTTAGACATGCCATCCCATAGAAATTTTTTTCGAGGCCACAAACTAGACGAAAAGGTTTGGGGCAAAATTTAGAGAGATGTAATATCACGAAATGGCTAGGTAAGCACCACAAGTAGGCCTAGGCTATTTCTTTGCAAAATTGTGCTCAATCTCATACGTGGCAACCAGATCTCTTCTTTAGTTGGGGGAAGAATCGGATTTTTGAGGAACCTATTAAGAAAATTAGATTTGGTTAGACAATGCGTGTAGTTGGTAAACCAAGATATTGAATATTTGACAAAAATATTCAATATGATTCGAAGGATACATATTTGGTGTCGGATTTGCTTATTAAAGCTTACCGAGGTTGCAAAGAAAGAAATATTATAGAGATTAGAGTGAGGGAAGGTAGAAATTGGAGGGGGTTATGCTACTATTGCTAGAGAAACAAATGTTAATATAGAAAGGGAAATGGAAATTTTGAAAGGCAACTGCGAAATATTATTAAGTTTTGAGATTTTGAATGATGAAATTATGTTCTTCGCACTTTTGGTTCGTTGGATAATGTTTTTATTTAAATTTTCTATTTCTTAAAATTAGGTTTGTTTTAGTATGGTGTATTGTTTACCTTTCAAAGGAGAGGTGTACTTTGTTCGAGAGGGGCATCGGCTAATTTAGAGAATGATCATGTTTTTATAATTAAATAATACTATTTTCATAGATAAGAGGTCTTTTGAGGAAGTTTGAGCTTATGCTCAAAGTGAACGAGCAAGAGCAATATCATACCATTGTAGAAGTTGGGTTTATCTAACAATTTCCATTGGGTTTATCTAACAATTTCCATATTTTATTAAGGGATATGACTGAAAATTTTCAAACTACATGGCATAAATTTCTACTTTCCTCATTCATTACTGCAAAATATAAAACGAAAACAAATTATACCACAAAGATCAGAGAAGGAGAAGAACAAC

Coding sequence (CDS)

ATGTTCGGAGCTCAACTCTCCTCCTCCGCCTTCGGCACTCCGCAGTCAACTCCGGCCTTCGGCACTCCGCAGTCAACTCCGGCCTTCGGTACTCCACAATCAACTCCGGCCTTCGGTACTCCACAATCAACTCCGGCCTTTGGTACTCCACAATCAACTCCGGCCTTCGGAACTCCATCGGCATCCCCCGCGTTTGGAAACTTTTCATCAACTCCTGCTTTTGGAACTCCATCTTCGTCGTCTTTTGCTACCGGCTTCGGCTCGTCTCTTTTCTCCACTCCTTTCTCTTCTCAGCCTTCACAACAGCAGCAGCAGCAATCGCCGTTGTTTCAGCTACCAGCAGCTACAGGATTCGGTTTCCAGACTCCGTTTGCAGCGCCTCAGTCCAGTCCATTTCCAAATGCTCAATTGACCACCCAGATGGCCCCGGTGGCACCGCTTCCTTTCTCCATGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAAGGACGACGCAGGAAACCCTAAGTATGCCTTCAAGCGTTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAACCTGCTGGTGTGTCGGATATAATGTGGGCTGAGGCTATGGCAAAACTTGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCACAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGATTGAAGATTCAAGATGAAGTCATTCTTTCTGATGCTGAGAGACTGCGGATGACCCAAAGCAATGTCAAAACGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGATCCAAAGATTGAAACAGAAGGAGCAAGGTCTTCAAAGGCGTCTTTTGAGAATGATGAGAGTCGTGGAGGCGCTAGAAAGTAAGGGTTGCCGAGTGCCTATAATGACAGGGGAGGCTGAATTGGCTGAGAGGTTAGCTTTGATAACAAGACAGTTGAGAGGATCTGGAGCAGAGCTTTCGAGGAGGGTGAAAAATTTGCTTACAATTACTTGTGGTCAAGCAAATGGCTCTGGTGCTGGTAATTCTATCTATCTTCAAGGTTCGACAAAAATACATGAACAGAGTCTTGCTGATATGCAGGAGGTATTGCAGCAGCAGACTGAGGCCATTGCTAGACTTGGAACTGTTTTAAAGCGAGATGTTAGAGACATGGAAATTATAATGGCTGAAGACAAAGAGATGATAGATGATTTGAGTTAA

Protein sequence

MFGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPSASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGFQTPFAAPQSSPFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS

Homology

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BLAST of CmoCh18G006950 vs. ExPASy Swiss-Prot
Match: Q8GYF7 (Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1 SV=1)

HSP 1 Score: 480.3 bits (1235), Expect = 2.1e-134
Identity = 261/377 (69.23%), Postives = 311/377 (82.49%), Query Frame = 0


Query: 38  FGTPQSTPAFGTPQSTPAFGTPSASPAFGNFSSTPAFGTPSSSSFAT-GFGSSLFSTPFS 97
           FGTP S+P+FGTP STPAFGT  +SPAFG  S+TPAFGTPS+ SF++ GFGSSLFS+PFS
Sbjct: 2   FGTPSSSPSFGTPSSTPAFGT--SSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFS 61

Query: 98  SQPSQQQQQQ------SPLFQLPAATGFGFQTPF----AAPQSSPFPNAQLTTQMAPVAP 157
           SQ  QQQQQQ      S LFQ   ++ FGFQ+PF       Q +PFPNAQLTTQMAPVAP
Sbjct: 62  SQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAP 121

Query: 158 LPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 217
           +P+S+ADRD+QAI+EAYK+D  NPKYAF+ LLFSVT+PQYR KPA VSDIMWAEAM+KLE
Sbjct: 122 IPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLE 181

Query: 218 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQRHFLADTLPW 277
           GM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVK LQRH  A T P 
Sbjct: 182 GMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPS 241

Query: 278 IQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQLRGSGAELS 337
           I+RL+QKEQ LQRR+LR+MR++E LE KG R+P+  GEAEL+E+L  ITRQ++G GAELS
Sbjct: 242 IERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELS 301

Query: 338 RRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIARLGTVLKRD 397
           RRV++L TI+  QAN   AG+S+YL GSTKI EQSL DMQEVLQQ+TEAI RLG VLKRD
Sbjct: 302 RRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRD 361

Query: 398 VRDMEIIMAEDKEMIDD 404
           +RDMEI++AED EM  D
Sbjct: 362 MRDMEIMVAEDTEMALD 376

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BLAST of CmoCh18G006950 vs. ExPASy Swiss-Prot
Match: Q9VDV3 (Nuclear pore complex protein Nup58 OS=Drosophila melanogaster OX=7227 GN=Nup58 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.4e-15
Identity = 68/159 (42.77%), Postives = 91/159 (57.23%), Query Frame = 0


Query: 2   FGAQLSSSAFGTPQSTPAFG-TPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPS 61
           FGA  ++ AFG P STP FG T  + PAFGT  +TPAFG P +T AFG P +TPAFG  +
Sbjct: 64  FGAPAATPAFGAPASTPGFGATSTAAPAFGTAAATPAFGIPAATSAFGAPAATPAFGAAA 123

Query: 62  ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPA------ 121
           A+PAFG  ++TPAFG P+++S    FG+   +T F +  S     Q+  F  PA      
Sbjct: 124 ATPAFGAPAATPAFGAPAATS---AFGAPAATTAFGAPAS----TQASAFGAPAPAVGTV 183

Query: 122 ATGFGFQTP-FAAPQSSPFPNAQLTTQMAPVAPLPFSMA 153
           A  F F TP  +AP ++P      TT     A +P S++
Sbjct: 184 APTFSFATPATSAPTTAPPAFGFGTTATTAAAAMPASLS 215

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BLAST of CmoCh18G006950 vs. ExPASy Swiss-Prot
Match: Q8BTS4 (Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-07
Identity = 55/204 (26.96%), Postives = 102/204 (50.00%), Query Frame = 0


Query: 190 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQ 249
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 363

Query: 250 SNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAE 309
            ++  LQ++    T+  I + K+K   L  R L+++   E     G    I   E +L  
Sbjct: 364 EDISELQKN-QTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRKSG--YAIQADEEQLRV 423

Query: 310 RLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVL 369
           +L  I  +L  +  +   R+  L++      N  GA  S   +    I    L ++++ L
Sbjct: 424 QLDTIQGEL-NAPTQFKGRLNELMS-QIRMQNHFGAVKS---EEKYYIDADLLREIKQHL 483

Query: 370 QQQTEAIARLGTVLKRDVRDMEII 394
           +QQ E ++ L +++K D+ D++++
Sbjct: 484 KQQQEGLSHLISIIKDDLEDIKLV 494

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BLAST of CmoCh18G006950 vs. ExPASy Swiss-Prot
Match: P70582 (Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-07
Identity = 55/204 (26.96%), Postives = 102/204 (50.00%), Query Frame = 0


Query: 190 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQ 249
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 363

Query: 250 SNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAE 309
            ++  LQ++    T+  I + K+K   L  R L+++   E     G    I   E +L  
Sbjct: 364 EDISELQKN-QTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSG--YAIQAEEEQLRV 423

Query: 310 RLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVL 369
           +L  I  +L  +  +   R+  L++      N  GA  S   +    I    L ++++ L
Sbjct: 424 QLDTIQGEL-NAPTQFKGRLNELMS-QIRMQNHFGAVKS---EEKYYIDADLLREIKQHL 483

Query: 370 QQQTEAIARLGTVLKRDVRDMEII 394
           +QQ E ++ L +++K D+ D++++
Sbjct: 484 KQQQEGLSHLISIIKDDLEDIKLV 494

[Close]

BLAST of CmoCh18G006950 vs. ExPASy Swiss-Prot
Match: Q7Z3B4 (Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-06
Identity = 54/204 (26.47%), Postives = 102/204 (50.00%), Query Frame = 0


Query: 190 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQ 249
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 360

Query: 250 SNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAE 309
            ++  LQ++    ++  I + K+K   L  R L+++   E     G    I   E +L  
Sbjct: 361 EDISELQKN-QTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSG--YAIQADEEQLRV 420

Query: 310 RLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVL 369
           +L  I  +L  +  +   R+  L++      N  GA  S   +    I    L ++++ L
Sbjct: 421 QLDTIQGEL-NAPTQFKGRLNELMS-QIRMQNHFGAVRS---EERYYIDADLLREIKQHL 480

Query: 370 QQQTEAIARLGTVLKRDVRDMEII 394
           +QQ E ++ L +++K D+ D++++
Sbjct: 481 KQQQEGLSHLISIIKDDLEDIKLV 491

[Close]

BLAST of CmoCh18G006950 vs. ExPASy TrEMBL
Match: A0A6J1G105 (nuclear pore complex protein NUP54 OS=Cucurbita moschata OX=3662 GN=LOC111449684 PE=4 SV=1)

HSP 1 Score: 760.8 bits (1963), Expect = 3.0e-216
Identity = 405/405 (100.00%), Postives = 405/405 (100.00%), Query Frame = 0


Query: 1   MFGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPS 60
           MFGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPS
Sbjct: 1   MFGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPS 60

Query: 61  ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGF 120
           ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGF
Sbjct: 61  ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGF 120

Query: 121 QTPFAAPQSSPFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFS 180
           QTPFAAPQSSPFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFS
Sbjct: 121 QTPFAAPQSSPFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFS 180

Query: 181 VTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILS 240
           VTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILS
Sbjct: 181 VTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILS 240

Query: 241 DAERLRMTQSNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPI 300
           DAERLRMTQSNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPI
Sbjct: 241 DAERLRMTQSNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPI 300

Query: 301 MTGEAELAERLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQ 360
           MTGEAELAERLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQ
Sbjct: 301 MTGEAELAERLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQ 360

Query: 361 SLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS 406
           SLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS
Sbjct: 361 SLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS 405

[Close]

BLAST of CmoCh18G006950 vs. ExPASy TrEMBL
Match: A0A6J1HT18 (nuclear pore complex protein NUP54 OS=Cucurbita maxima OX=3661 GN=LOC111466521 PE=4 SV=1)

HSP 1 Score: 724.5 bits (1869), Expect = 2.4e-205
Identity = 389/405 (96.05%), Postives = 392/405 (96.79%), Query Frame = 0


Query: 1   MFGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPS 60
           MFGAQLSSS         AFGTPQSTP FGTPQSTPAFGTPQSTPAFGTP STPAFGTPS
Sbjct: 1   MFGAQLSSS---------AFGTPQSTPGFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPS 60

Query: 61  ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGF 120
           ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGF
Sbjct: 61  ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGF 120

Query: 121 QTPFAAPQSSPFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFS 180
           QTPFAAPQSS FPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFS
Sbjct: 121 QTPFAAPQSSLFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFS 180

Query: 181 VTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILS 240
           VTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILS
Sbjct: 181 VTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILS 240

Query: 241 DAERLRMTQSNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPI 300
           DAERLRMTQSNVKTLQRHFLADTLPW+QRLKQKEQGLQRRLLRMMR+VEALESKGCRVPI
Sbjct: 241 DAERLRMTQSNVKTLQRHFLADTLPWVQRLKQKEQGLQRRLLRMMRIVEALESKGCRVPI 300

Query: 301 MTGEAELAERLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQ 360
           MTGEAELAE+LALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQ
Sbjct: 301 MTGEAELAEKLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQ 360

Query: 361 SLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS 406
           SL DMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS
Sbjct: 361 SLVDMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS 396

[Close]

BLAST of CmoCh18G006950 vs. ExPASy TrEMBL
Match: A0A6J1KFN7 (nuclear pore complex protein NUP54-like OS=Cucurbita maxima OX=3661 GN=LOC111492801 PE=4 SV=1)

HSP 1 Score: 686.0 bits (1769), Expect = 9.3e-194
Identity = 369/405 (91.11%), Postives = 382/405 (94.32%), Query Frame = 0


Query: 1   MFGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPS 60
           MFGAQ SSSAFGTPQSTPAFGTPQ+TPAFGTPQSTPAFGTPQSTPAFGTP STPAFGTPS
Sbjct: 1   MFGAQQSSSAFGTPQSTPAFGTPQTTPAFGTPQSTPAFGTPQSTPAFGTPSSTPAFGTPS 60

Query: 61  ASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGF 120
           ASPAFGN  STPAFGTPS+SSFATGFGSSLFSTPFSSQPS  QQQQSPLFQ   ATGFGF
Sbjct: 61  ASPAFGNL-STPAFGTPSTSSFATGFGSSLFSTPFSSQPS--QQQQSPLFQQRGATGFGF 120

Query: 121 QTPFAAPQSSPFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFS 180
           QTPFAAPQSSPFPNAQL TQMAPVAPLPF +ADRDIQAIVEAYKDDAGNPKYAFK LLFS
Sbjct: 121 QTPFAAPQSSPFPNAQLITQMAPVAPLPFCLADRDIQAIVEAYKDDAGNPKYAFKHLLFS 180

Query: 181 VTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILS 240
           VTDPQYRAKPAGVSD MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVIL+
Sbjct: 181 VTDPQYRAKPAGVSDTMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILA 240

Query: 241 DAERLRMTQSNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPI 300
           DAERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCRVP+
Sbjct: 241 DAERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPV 300

Query: 301 MTGEAELAERLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQ 360
           M GEAELAE+L+LITRQ + SGAELSRRV+NLL IT GQ NGSGAGNSIYLQGS KIHEQ
Sbjct: 301 MKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQ 360

Query: 361 SLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS 406
           SLADMQEVLQQQTEAIARLGTVLKRDVRDM+IIMAEDKEM DD S
Sbjct: 361 SLADMQEVLQQQTEAIARLGTVLKRDVRDMKIIMAEDKEMTDDPS 402

[Close]

BLAST of CmoCh18G006950 vs. ExPASy TrEMBL
Match: A0A6J1H0M2 (nuclear pore complex protein NUP54-like OS=Cucurbita moschata OX=3662 GN=LOC111458857 PE=4 SV=1)

HSP 1 Score: 667.2 bits (1720), Expect = 4.5e-188
Identity = 367/416 (88.22%), Postives = 379/416 (91.11%), Query Frame = 0


Query: 1   MFGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQ--------- 60
           MFGAQ SSSAFGTPQSTPAFGT QSTPAFGT QSTPAFGTPQ+TP FGTPQ         
Sbjct: 1   MFGAQQSSSAFGTPQSTPAFGTLQSTPAFGTLQSTPAFGTPQTTPVFGTPQSTPAFSTLA 60

Query: 61  STPAFGTPSASPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPS--QQQQQQSPL 120
           STPAFGT SASPAFGN  STPAFGTPS+SSFATGFGSSLFSTPFSSQPS  QQQQQQSPL
Sbjct: 61  STPAFGTSSASPAFGNL-STPAFGTPSTSSFATGFGSSLFSTPFSSQPSQQQQQQQQSPL 120

Query: 121 FQLPAATGFGFQTPFAAPQSSPFPNAQLTTQMAPVAPLPFSMADRDIQAIVEAYKDDAGN 180
           FQ   A GFGFQTPFAAPQSSPF NAQL TQMAPVAPLPF +ADRDIQAIVEAYKDDAGN
Sbjct: 121 FQQRGAAGFGFQTPFAAPQSSPFLNAQLITQMAPVAPLPFCLADRDIQAIVEAYKDDAGN 180

Query: 181 PKYAFKRLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQ 240
           PKYAFK LLFSVTDPQYRAKPAGVSD MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQ
Sbjct: 181 PKYAFKHLLFSVTDPQYRAKPAGVSDTMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQ 240

Query: 241 RLKIQDEVILSDAERLRMTQSNVKTLQRHFLADTLPWIQRLKQKEQGLQRRLLRMMRVVE 300
           RLKIQDEVIL+DAERLRMTQSNVK LQRHFLADTLPW+QRLKQKEQGLQRRLLR+MR+VE
Sbjct: 241 RLKIQDEVILADAERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVE 300

Query: 301 ALESKGCRVPIMTGEAELAERLALITRQLRGSGAELSRRVKNLLTITCGQANGSGAGNSI 360
           ALESKGCRVP+M GEAELAE+L+LITRQ + SGAELSRRV+NLL IT GQ NGSGAGNSI
Sbjct: 301 ALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSI 360

Query: 361 YLQGSTKIHEQSLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMIDDLS 406
           YLQGS KIHEQSLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEM DD S
Sbjct: 361 YLQGSAKIHEQSLADMQEVLQQQTEAIARLGTVLKRDVRDMEIIMAEDKEMTDDPS 415

[Close]

BLAST of CmoCh18G006950 vs. ExPASy TrEMBL
Match: A0A5A7SSX4 (Nuclear pore complex protein NUP54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002170 PE=4 SV=1)

HSP 1 Score: 656.8 bits (1693), Expect = 6.1e-185
Identity = 351/388 (90.46%), Postives = 366/388 (94.33%), Query Frame = 0


Query: 20  FGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPSASPAFGNFSSTPAFGTPSS 79
           FG   S+ AFGTPQSTPAFGTPQSTPAFGTP STPAFGTPSASPAFGN SSTPAFGTPS+
Sbjct: 2   FGAQTSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPST 61

Query: 80  SSFATGFGSSLFSTPFSSQPSQQQQ--QQSPLFQLPAATGFGFQTPFAAPQSSPFPNAQL 139
           SSFATGFGSSLFSTPFSSQPSQQQQ  QQS LF   +ATGFGFQTPFAAPQS+PFPNAQL
Sbjct: 62  SSFATGFGSSLFSTPFSSQPSQQQQQLQQSTLFPQSSATGFGFQTPFAAPQSTPFPNAQL 121

Query: 140 TTQMAPVAPLPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIM 199
           TTQMAPVAPLPFS+ADRDIQAIVEAYKDDAGNPKYAFK LLFSVTDPQYRAKP GVSDIM
Sbjct: 122 TTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPPGVSDIM 181

Query: 200 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQR 259
           WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVK LQR
Sbjct: 182 WAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQR 241

Query: 260 HFLADTLPWIQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQ 319
           HFLADTLPW+QRLKQKEQGLQRRLLR+MR+VEALESKGCRVP++ GEAELAE+LALITRQ
Sbjct: 242 HFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVVKGEAELAEKLALITRQ 301

Query: 320 LRGSGAELSRRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIA 379
           L+GSGAELS+RV+NLLTIT GQANGSG GNSIYLQGS KIHEQSLADMQEVLQQQTEAIA
Sbjct: 302 LKGSGAELSKRVQNLLTITRGQANGSGPGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIA 361

Query: 380 RLGTVLKRDVRDMEIIMAEDKEMIDDLS 406
           RLG VLKRDVRDMEIIMAEDKEM DD S
Sbjct: 362 RLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of CmoCh18G006950 vs. TAIR 10
Match: AT1G24310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). )

HSP 1 Score: 480.3 bits (1235), Expect = 1.5e-135
Identity = 261/377 (69.23%), Postives = 311/377 (82.49%), Query Frame = 0


Query: 38  FGTPQSTPAFGTPQSTPAFGTPSASPAFGNFSSTPAFGTPSSSSFAT-GFGSSLFSTPFS 97
           FGTP S+P+FGTP STPAFGT  +SPAFG  S+TPAFGTPS+ SF++ GFGSSLFS+PFS
Sbjct: 2   FGTPSSSPSFGTPSSTPAFGT--SSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFS 61

Query: 98  SQPSQQQQQQ------SPLFQLPAATGFGFQTPF----AAPQSSPFPNAQLTTQMAPVAP 157
           SQ  QQQQQQ      S LFQ   ++ FGFQ+PF       Q +PFPNAQLTTQMAPVAP
Sbjct: 62  SQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAP 121

Query: 158 LPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 217
           +P+S+ADRD+QAI+EAYK+D  NPKYAF+ LLFSVT+PQYR KPA VSDIMWAEAM+KLE
Sbjct: 122 IPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLE 181

Query: 218 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQRHFLADTLPW 277
           GM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVK LQRH  A T P 
Sbjct: 182 GMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPS 241

Query: 278 IQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQLRGSGAELS 337
           I+RL+QKEQ LQRR+LR+MR++E LE KG R+P+  GEAEL+E+L  ITRQ++G GAELS
Sbjct: 242 IERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELS 301

Query: 338 RRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIARLGTVLKRD 397
           RRV++L TI+  QAN   AG+S+YL GSTKI EQSL DMQEVLQQ+TEAI RLG VLKRD
Sbjct: 302 RRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRD 361

Query: 398 VRDMEIIMAEDKEMIDD 404
           +RDMEI++AED EM  D
Sbjct: 362 MRDMEIMVAEDTEMALD 376

[Close]

BLAST of CmoCh18G006950 vs. TAIR 10
Match: AT1G59660.1 (Nucleoporin autopeptidase )

HSP 1 Score: 43.9 bits (102), Expect = 3.6e-04
Identity = 62/142 (43.66%), Postives = 77/142 (54.23%), Query Frame = 0


Query: 2   FGAQLSSSAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPSA 61
           FGA  +++ FG   STP FG   STPAFG+  +TPAFG   STP FG+  S+PAFG  S 
Sbjct: 180 FGA-TNTTGFG-GSSTPGFGA-SSTPAFGS-TNTPAFGA-SSTPLFGS-SSSPAFGA-SP 239

Query: 62  SPAFGNFSSTPAFGTPSSSSFATGFGSSLFSTPFSSQPSQQQQQQSPLFQLPAATGFGFQ 121
           +PAFG  SS  AFG  + SS    FGSS   T  +S  S      SP F   ++  FG  
Sbjct: 240 APAFG--SSGNAFGNNTFSS-GGAFGSSSTPTFGASNTSAFGASSSPSFNFGSSPAFGQS 299

Query: 122 TPFAAPQSSPFPNAQLTTQMAP 144
           T  +A  SS F + Q +    P
Sbjct: 300 T--SAFGSSSFGSTQSSLGSTP 309

The following BLAST results are available for this feature:

BLAST of CmoCh18G006950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYF7	2.1e-134	69.23	Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1...	[more]
Q9VDV3	4.4e-15	42.77	Nuclear pore complex protein Nup58 OS=Drosophila melanogaster OX=7227 GN=Nup58 P...	[more]
Q8BTS4	3.4e-07	26.96	Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1	[more]
P70582	3.4e-07	26.96	Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 S...	[more]
Q7Z3B4	1.3e-06	26.47	Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2	[more]

BLAST of CmoCh18G006950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G105	3.0e-216	100.00	nuclear pore complex protein NUP54 OS=Cucurbita moschata OX=3662 GN=LOC111449684...	[more]
A0A6J1HT18	2.4e-205	96.05	nuclear pore complex protein NUP54 OS=Cucurbita maxima OX=3661 GN=LOC111466521 P...	[more]
A0A6J1KFN7	9.3e-194	91.11	nuclear pore complex protein NUP54-like OS=Cucurbita maxima OX=3661 GN=LOC111492...	[more]
A0A6J1H0M2	4.5e-188	88.22	nuclear pore complex protein NUP54-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5A7SSX4	6.1e-185	90.46	Nuclear pore complex protein NUP54 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmoCh18G006950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24310.1	1.5e-135	69.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G59660.1	3.6e-04	43.66	Nucleoporin autopeptidase	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 267..287
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	PANTHER	PTHR13000:SF0	NUCLEOPORIN P54	coord: 1..399
IPR025712	Nucleoporin Nup54, alpha-helical domain	PFAM	PF13874	Nup54	coord: 189..333 e-value: 2.4E-29 score: 102.2
IPR024864	Nucleoporin Nup54/Nup57/Nup44	PANTHER	PTHR13000	NUCLEOPORIN P54	coord: 1..399

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G006950.1	CmoCh18G006950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006607	NLS-bearing protein import into nucleus
biological_process	GO:0006999	nuclear pore organization
biological_process	GO:0036228	protein localization to nuclear inner membrane
cellular_component	GO:0044613	nuclear pore central transport channel
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0017056	structural constituent of nuclear pore