CmoCh18G005790 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G005790
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionpentatricopeptide repeat-containing protein At4g16390, chloroplastic
LocationCmo_Chr18: 5468147 .. 5469549 (-)
RNA-Seq ExpressionCmoCh18G005790
SyntenyCmoCh18G005790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCTATAGGCATCAACCCAAACTTGGTTATATATGCTATTGGTAGGGCTAAAAGGCCATGGAAGATCAAGACCCTCTACAAAGAGATGATTAAAAATGGACTTTTGCCAAGTTGGACATCTTATGCTTCTCTTTTACAAGCCTATGGGGGAGCCAGATACGGTGAGGAGGCTCTCCTTGTGTACAAGGAGATAACGGAAAAGGAACTGCAGCCGAATGTTATTCTCTACAATATACTTTTAGCTATGTGTGCTGTGAGTCACACTCGCATTCTTACCGTAGCGGAACAAGCCCAGCAAATAAGTCAACTGTGAGAAATTCGTCCTTGGTGGACAACGTCGGCCTATGCTTGAGGCTCAGGTCACGTTTGTGAGAAATGTTTTAGAAAACGTGAGTGAGGAATACATTTGATTGAAGAATTGAAGAAAGCAACGTTATATGGCTATAAGAAAAGAAAGGAACACTACGGCTTAAATAGCATATAACTCAAGGTAAGAAGAATGATGTCACTTGTCATACCCCCCTCTAATACATTTTGGGGTATTTTAGCCGTGGCGAGTATAGACATGATTTTGGTGAACTGTCATATATTGACACAACATGAAATAGTAAAAACCTATCTAAGATGAAAGCATGTAAAAGGGATTTGGAACAAACATGCGACCATGGACAACACGTCTTGGACAAGTATGACCGGGACATCCGACATGCGCCATAGACAACACTCCTTGGACAAGCATGATCGTGACACTATATTGGCTACATCAATGAAGCCATTGACAATTCAGGGCTTGATCATGAGTTTATAATTAAAATTTTGTTAGCTACTATTGGGTATAAGTAGCGGGTGGAATTGGGAGAGAAGAAAGAGTATTTTTCACCATTGGCATGAGACCTTCTAGAGAAACCAAAATCAAAGTTACGAGAATTTTGCTCAAAATAGACAAATATCTTACCATTATGGAGAGTTGTGATTCGTATCTTACCATTATGGAGAGTTGTGATTCCTAACAAGATATTCTTCCGAGTTAGTAGAGTTAAAAGGCTTCTTTCACTAGGAGAGTTATTAAGGCTTCTTTCAGAGTTGATATTATTAAAAGCATTGAGTTTGATCTTTTAAAATTTTTATAATTTCTTGGTCAGAACTCTGTGGTGTGCAGTTAACATGGTACTGTCTTCTTATTTCTTATCTTTAATTCCCCATTGAAGTCGTTGGGTGTGTCTATTATATATTCATACAGGTCCTGAAGCAGTGTTATGCTTGGCACGTTGTCATCTCATGCCCTTCCAATGGACAAACATCTCAAACCCACATGCTATACATATTCACGAGACTTCCATTCCTTCTCCATTCATTGACAAAATGGGAAACTGCATCATCTTGCCTTGCGTTCACTGA

mRNA sequence

ATGAAGGCTATAGGCATCAACCCAAACTTGGTTATATATGCTATTGGTAGGGCTAAAAGGCCATGGAAGATCAAGACCCTCTACAAAGAGATGATTAAAAATGGACTTTTGCCAAGTTGGACATCTTATGCTTCTCTTTTACAAGCCTATGGGGGAGCCAGATACGGTCCTGAAGCAGTGTTATGCTTGGCACGTTGTCATCTCATGCCCTTCCAATGGACAAACATCTCAAACCCACATGCTATACATATTCACGAGACTTCCATTCCTTCTCCATTCATTGACAAAATGGGAAACTGCATCATCTTGCCTTGCGTTCACTGA

Coding sequence (CDS)

ATGAAGGCTATAGGCATCAACCCAAACTTGGTTATATATGCTATTGGTAGGGCTAAAAGGCCATGGAAGATCAAGACCCTCTACAAAGAGATGATTAAAAATGGACTTTTGCCAAGTTGGACATCTTATGCTTCTCTTTTACAAGCCTATGGGGGAGCCAGATACGGTCCTGAAGCAGTGTTATGCTTGGCACGTTGTCATCTCATGCCCTTCCAATGGACAAACATCTCAAACCCACATGCTATACATATTCACGAGACTTCCATTCCTTCTCCATTCATTGACAAAATGGGAAACTGCATCATCTTGCCTTGCGTTCACTGA

Protein sequence

MKAIGINPNLVIYAIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVLCLARCHLMPFQWTNISNPHAIHIHETSIPSPFIDKMGNCIILPCVH
Homology
[Close]
BLAST of CmoCh18G005790 vs. ExPASy Swiss-Prot
Match: Q8GWE0 (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P67 PE=1 SV=3)

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-16
Identity = 36/65 (55.38%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKA+G+ PNLVIY     ++GRAKRPW+ K +YK++I NG  P+W++YA+L++AYG ARY
Sbjct: 306 MKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARY 365

[Close]
BLAST of CmoCh18G005790 vs. ExPASy Swiss-Prot
Match: B4F8Z1 (Pentatricopeptide repeat-containing protein ATP4, chloroplastic OS=Zea mays OX=4577 GN=ATP4 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-11
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKAIG+ PNLV+Y     A+GRA RPW +KT+++EM+   + PS  +Y  LL AY  ARY
Sbjct: 295 MKAIGVRPNLVVYNTMLDAMGRALRPWVVKTIHREMVDQQVQPSRATYCCLLHAYTRARY 354

[Close]
BLAST of CmoCh18G005790 vs. ExPASy Swiss-Prot
Match: Q10PZ4 (Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0215900 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-11
Identity = 30/65 (46.15%), Postives = 44/65 (67.69%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKA G+ PNLV+Y     A+GRA RPW +KT+++E++    +P+  +Y  LL AY  ARY
Sbjct: 280 MKAAGVKPNLVVYNTVLDAMGRAMRPWVVKTIHRELVSQEAVPNKATYCCLLHAYTRARY 339

[Close]
BLAST of CmoCh18G005790 vs. ExPASy Swiss-Prot
Match: Q9LS25 (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-05
Identity = 23/65 (35.38%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MK++ + PN+V+Y     A+GRA +P   ++L+ EM++ GL P+  +  +L++ YG AR+
Sbjct: 317 MKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARW 376

[Close]
BLAST of CmoCh18G005790 vs. ExPASy TrEMBL
Match: A0A6J1CNE5 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012613 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.4e-18
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIKNG  PSW +YASLL+AYG ARY
Sbjct: 310 MKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARY 369

Query: 61  GPEAVL 62
           G +A+L
Sbjct: 370 GEDALL 375

[Close]
BLAST of CmoCh18G005790 vs. ExPASy TrEMBL
Match: A0A0A0LVP1 (Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G173140 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.5e-18
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIKNG  PSW +YASLL+AYG ARY
Sbjct: 310 MKAIGIKPNLVIYNCLLDAMGRAKRPWQIKTIYKEMIKNGFSPSWATYASLLRAYGRARY 369

Query: 61  GPEAVL 62
           G +A++
Sbjct: 370 GEDALI 375

[Close]
BLAST of CmoCh18G005790 vs. ExPASy TrEMBL
Match: A0A5A7TLM5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00400 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIK+G  PSW +YASLL+AYG ARY
Sbjct: 310 MKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKSGFSPSWATYASLLRAYGRARY 369

Query: 61  GPEAVL 62
           G +A++
Sbjct: 370 GEDALI 375

[Close]
BLAST of CmoCh18G005790 vs. ExPASy TrEMBL
Match: A0A1S3CL39 (pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502208 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-17
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKAIGI PNLVIY     A+GRAKRPW+IKT+YKEMIK+G  PSW +YASLL+AYG ARY
Sbjct: 310 MKAIGIKPNLVIYNSLLDAMGRAKRPWQIKTIYKEMIKSGFSPSWATYASLLRAYGRARY 369

Query: 61  GPEAVL 62
           G +A++
Sbjct: 370 GEDALI 375

[Close]
BLAST of CmoCh18G005790 vs. ExPASy TrEMBL
Match: A0A200PVF3 (Smr protein/MutS2 C-terminal OS=Macleaya cordata OX=56857 GN=BVC80_8785g16 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.2e-16
Identity = 42/65 (64.62%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKA+G+ PNLVIY     A+GRAKRPW+ K +YKEMIKNG  P+W +YASLL+AYG ARY
Sbjct: 314 MKALGVKPNLVIYNTLLDAMGRAKRPWQAKNVYKEMIKNGFTPNWATYASLLRAYGRARY 373

[Close]
BLAST of CmoCh18G005790 vs. TAIR 10
Match: AT4G16390.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 85.1 bits (209), Expect = 3.7e-17
Identity = 36/65 (55.38%), Postives = 52/65 (80.00%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MKA+G+ PNLVIY     ++GRAKRPW+ K +YK++I NG  P+W++YA+L++AYG ARY
Sbjct: 306 MKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARY 365

[Close]
BLAST of CmoCh18G005790 vs. TAIR 10
Match: AT5G46580.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 50.8 bits (120), Expect = 7.7e-07
Identity = 23/65 (35.38%), Postives = 43/65 (66.15%), Query Frame = 0 

Query: 1   MKAIGINPNLVIY-----AIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARY 60
           MK++ + PN+V+Y     A+GRA +P   ++L+ EM++ GL P+  +  +L++ YG AR+
Sbjct: 317 MKSMDVKPNVVVYNTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARW 376

[Close]
BLAST of CmoCh18G005790 vs. TAIR 10
Match: AT1G73710.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.7e-04
Identity = 21/56 (37.50%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 6   INPNLVIYAIGRAKRPWKIKTLYKEMIKNGLLPSWTSYASLLQAYGGARYGPEAVL 62
           I+ N+V+ A+GRA +  +++  + EM  NG+LP+  +Y  L+  YG A    EA+L
Sbjct: 146 IHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALL 201

The following BLAST results are available for this feature:
BLAST of CmoCh18G005790 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GWE05.2e-1655.38Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidop... [more]
B4F8Z11.0e-1150.77Pentatricopeptide repeat-containing protein ATP4, chloroplastic OS=Zea mays OX=4... [more]
Q10PZ48.6e-1146.15Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic OS=Oryza... [more]
Q9LS251.1e-0535.38Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidop... [more]
BLAST of CmoCh18G005790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNE54.4e-1872.73pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Momordic... [more]
A0A0A0LVP17.5e-1871.21Smr domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G173140 PE=3 SV... [more]
A0A5A7TLM52.9e-1769.70Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3CL392.9e-1769.70pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Cucumis ... [more]
A0A200PVF39.2e-1664.62Smr protein/MutS2 C-terminal OS=Macleaya cordata OX=56857 GN=BVC80_8785g16 PE=3 ... [more]
BLAST of CmoCh18G005790 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G16390.13.7e-1755.38pentatricopeptide (PPR) repeat-containing protein [more]
AT5G46580.17.7e-0735.38pentatricopeptide (PPR) repeat-containing protein [more]
AT1G73710.14.7e-0437.50Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..85
e-value: 3.7E-6
score: 28.6
NoneNo IPR availablePANTHERPTHR47942:SF10PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ATP4 HOMOLOG, CHLOROPLASTICcoord: 1..61
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G005790.1CmoCh18G005790.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0031425 chloroplast RNA processing
biological_process GO:0030071 regulation of mitotic metaphase/anaphase transition
cellular_component GO:0005680 anaphase-promoting complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003729 mRNA binding
molecular_function GO:0005515 protein binding