CmoCh18G005690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G005690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	conserved oligomeric Golgi complex subunit 8-like isoform X1
Location	Cmo_Chr18: 4726959 .. 4727375 (+)
RNA-Seq Expression	CmoCh18G005690
Synteny	CmoCh18G005690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTGTTGGTGCCCGTCTCGGCCGTTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACCGGCCCCGTCAGGAAGTGGAAGAAGAAATGGGTCCACGTTGCGCCCTCTACCGCCGCTTCCAACAACCATTCTCACTCCCAGCGCCACACCACCCCCACTAATGTAACCACCAATGCCACTGCCAATCCTACTAATAACGCTTCCCATCTTTTGCTTTACAAATGGACGCCTATTACTCAGAGTCTCAACAATGGCAACAACGATGACAAGAACGCCGGCAAAGACGACACCCCTACGGTGACGGAGGAGCCTCCTCGCCGGAAATTCAAATACATTCCGGTAACAGCTTTCTATTTTCTACTTCGATTATCTGGGGTTGTTGAATTTGAAGTTCTAAATACTTTCCGGTAG

mRNA sequence

ATGGAGGGTGTTGGTGCCCGTCTCGGCCGTTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACCGGCCCCGTCAGGAAGTGGAAGAAGAAATGGGTCCACGTTGCGCCCTCTACCGCCGCTTCCAACAACCATTCTCACTCCCAGCGCCACACCACCCCCACTAATGTAACCACCAATGCCACTGCCAATCCTACTAATAACGCTTCCCATCTTTTGCTTTACAAATGGACGCCTATTACTCAGAGTCTCAACAATGGCAACAACGATGACAAGAACGCCGGCAAAGACGACACCCCTACGGTGACGGAGGAGCCTCCTCGCCGGAAATTCAAATACATTCCGGTAACAGCTTTCTATTTTCTACTTCGATTATCTGGGGTTGTTGAATTTGAAGTTCTAAATACTTTCCGGTAG

Coding sequence (CDS)

ATGGAGGGTGTTGGTGCCCGTCTCGGCCGTTCTTCAACTCGCTACGGACCCGCCACCGTCTTCACCGGCCCCGTCAGGAAGTGGAAGAAGAAATGGGTCCACGTTGCGCCCTCTACCGCCGCTTCCAACAACCATTCTCACTCCCAGCGCCACACCACCCCCACTAATGTAACCACCAATGCCACTGCCAATCCTACTAATAACGCTTCCCATCTTTTGCTTTACAAATGGACGCCTATTACTCAGAGTCTCAACAATGGCAACAACGATGACAAGAACGCCGGCAAAGACGACACCCCTACGGTGACGGAGGAGCCTCCTCGCCGGAAATTCAAATACATTCCGGTAACAGCTTTCTATTTTCTACTTCGATTATCTGGGGTTGTTGAATTTGAAGTTCTAAATACTTTCCGGTAG

Protein sequence

MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTNATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIPVTAFYFLLRLSGVVEFEVLNTFR

Homology

[Close]

BLAST of CmoCh18G005690 vs. ExPASy TrEMBL
Match: A0A6J1EHR2 (uncharacterized protein LOC111432647 OS=Cucurbita moschata OX=3662 GN=LOC111432647 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.3e-59
Identity = 115/116 (99.14%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60

Query: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIPV 117
           ATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIP+
Sbjct: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIPI 116

[Close]

BLAST of CmoCh18G005690 vs. ExPASy TrEMBL
Match: A0A6J1JX59 (uncharacterized protein LOC111490478 OS=Cucurbita maxima OX=3661 GN=LOC111490478 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.6e-58
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60

Query: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIPV 117
            TANPTNNASHLLLYKWTPI+QSLNNGNNDDKNAGKD+TPTVTEEPPRRKFKYIP+
Sbjct: 61  GTANPTNNASHLLLYKWTPISQSLNNGNNDDKNAGKDETPTVTEEPPRRKFKYIPI 116

[Close]

BLAST of CmoCh18G005690 vs. ExPASy TrEMBL
Match: A0A5D3CMI7 (Putative serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001230 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 103/116 (88.79%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HVAPST ASNNHSHSQRHT P NV  N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVAAN 60

Query: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIPV 117
           ATAN T NASHLLL+KWTPITQSLNNGN D+KNAGK+DTPTVTEEPPRRKFKYIP+
Sbjct: 61  ATANSTTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYIPI 116

[Close]

BLAST of CmoCh18G005690 vs. ExPASy TrEMBL
Match: A0A1S3CAB6 (uncharacterized protein LOC103498224 OS=Cucumis melo OX=3656 GN=LOC103498224 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 103/116 (88.79%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HVAPST ASNNHSHSQRHT P NV  N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVAAN 60

Query: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIPV 117
           ATAN T NASHLLL+KWTPITQSLNNGN D+KNAGK+DTPTVTEEPPRRKFKYIP+
Sbjct: 61  ATANSTTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYIPI 116

[Close]

BLAST of CmoCh18G005690 vs. ExPASy TrEMBL
Match: A0A5A7UL95 (Golgin subfamily A member 6-like protein 22 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00300 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.5e-52
Identity = 103/115 (89.57%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKW+HVAPST ASNNHSHSQRHT P NV  N
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWIHVAPSTTASNNHSHSQRHTNPNNVAAN 60

Query: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIP 116
           ATAN T NASHLLL+KWTPITQSLNNGN D+KNAGK+DTPTVTEEPPRRKFKYIP
Sbjct: 61  ATANSTTNASHLLLFKWTPITQSLNNGNADEKNAGKEDTPTVTEEPPRRKFKYIP 115

[Close]

BLAST of CmoCh18G005690 vs. TAIR 10
Match: AT4G22320.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1); Has 8953 Blast hits to 5363 proteins in 542 species: Archae - 33; Bacteria - 806; Metazoa - 2454; Fungi - 831; Plants - 279; Viruses - 151; Other Eukaryotes - 4399 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-32
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHV+PS+   NN+S S       +V   
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60

Query: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDK---NAGKDDT-PTVTEEPPRRKFKYIPV 117
            + +  +N SHLLLYKW P++Q+  NGN D K   N+  +DT  TV E+PPRR+FKY+P+
Sbjct: 61  GSNSDGSNGSHLLLYKWAPLSQN-GNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPI 119

[Close]

BLAST of CmoCh18G005690 vs. TAIR 10
Match: AT4G22320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1). )

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-32
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNVTTN 60
           MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHV+PS+   NN+S S       +V   
Sbjct: 1   MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60

Query: 61  ATANPTNNASHLLLYKWTPITQSLNNGNNDDK---NAGKDDT-PTVTEEPPRRKFKYIPV 117
            + +  +N SHLLLYKW P++Q+  NGN D K   N+  +DT  TV E+PPRR+FKY+P+
Sbjct: 61  GSNSDGSNGSHLLLYKWAPLSQN-GNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPI 119

[Close]

BLAST of CmoCh18G005690 vs. TAIR 10
Match: AT5G55210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G22320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 2.6e-15
Identity = 51/119 (42.86%), Postives = 70/119 (58.82%), Query Frame = 0


Query: 1   MEGVGARLGRSSTRY-GPA--TVFTGPVRKWKKKWVHVAPSTAASNNHSHSQRHTTPTNV 60
           MEGVG+RL R+S+RY GPA   VF+G VRKWKKKWV V+ S+      S S         
Sbjct: 1   MEGVGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNGRN----- 60

Query: 61  TTNATANPTNNASHLLLYKWTPITQSLNNGNNDDKNAGKDDTPTVTEEPPRRKFKYIPV 117
                +N +N+  HLLL+KWTP+T +     +D   +G+      TEE P+R+F+Y P+
Sbjct: 61  ----NSNNSNSPHHLLLHKWTPLTSATVTA-SDANGSGE------TEESPKRRFRYAPI 103

The following BLAST results are available for this feature:

BLAST of CmoCh18G005690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G005690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHR2	2.3e-59	99.14	uncharacterized protein LOC111432647 OS=Cucurbita moschata OX=3662 GN=LOC1114326...	[more]
A0A6J1JX59	5.6e-58	96.55	uncharacterized protein LOC111490478 OS=Cucurbita maxima OX=3661 GN=LOC111490478...	[more]
A0A5D3CMI7	1.6e-52	88.79	Putative serine/threonine-protein kinase OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3CAB6	1.6e-52	88.79	uncharacterized protein LOC103498224 OS=Cucumis melo OX=3656 GN=LOC103498224 PE=...	[more]
A0A5A7UL95	3.5e-52	89.57	Golgin subfamily A member 6-like protein 22 isoform X2 OS=Cucumis melo var. maku...	[more]

BLAST of CmoCh18G005690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22320.1	1.4e-32	60.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G22320.2	1.4e-32	60.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G55210.1	2.6e-15	42.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..65
None	No IPR available	PANTHER	PTHR34572:SF1	GOLGIN FAMILY A PROTEIN	coord: 1..118
None	No IPR available	PANTHER	PTHR34572	GOLGIN FAMILY A PROTEIN	coord: 1..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G005690.1	CmoCh18G005690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity