CmoCh18G005050 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G005050
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor bHLH52-like
Location	Cmo_Chr18: 3588605 .. 3589357 (+)
RNA-Seq Expression	CmoCh18G005050
Synteny	CmoCh18G005050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCGGACCTCTTCTTTCTCCCTCCACCGCACCTCGATTACGTCCCTGCCATGCCCGATGACTCTGTTTTTATCCCGACTGTTGCTCCGTTCTTCGACGACGCTTCTCCGTTTCTTTTCTCCGACGTCTACCCGTATTTCTCCGCTGGATTCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGAGTTGGTGGTAACGTGGGTGGCGGAGGTGGCGGAGGTGGCTACTTTCCTTCGGGTTTGTTGGATGGGAGAGTGGATAATGTTGAAATGATGAACAATGGCAATTGCTCGAAGACGAAACAGTTGGTGTCGCCGAGTAACACCTTATCGGTGCAGACGATTGCGGCCCGGGAACGGCGGAGGAAGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTTCAAATATGTCAAATTCTTGCAAGCCCAAGTTGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGAATCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTAGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTCCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

mRNA sequence

ATGTCGCCGGACCTCTTCTTTCTCCCTCCACCGCACCTCGATTACGTCCCTGCCATGCCCGATGACTCTGTTTTTATCCCGACTGTTGCTCCGTTCTTCGACGACGCTTCTCCGTTTCTTTTCTCCGACGTCTACCCGTATTTCTCCGCTGGATTCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGAGTTGGTGGTAACGTGGGTGGCGGAGGTGGCGGAGGTGGCTACTTTCCTTCGGGTTTGTTGGATGGGAGAGTGGATAATGTTGAAATGATGAACAATGGCAATTGCTCGAAGACGAAACAGTTGGTGTCGCCGAGTAACACCTTATCGGTGCAGACGATTGCGGCCCGGGAACGGCGGAGGAAGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTTCAAATATGTCAAATTCTTGCAAGCCCAAGTTGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGAATCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTAGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTCCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

Coding sequence (CDS)

ATGTCGCCGGACCTCTTCTTTCTCCCTCCACCGCACCTCGATTACGTCCCTGCCATGCCCGATGACTCTGTTTTTATCCCGACTGTTGCTCCGTTCTTCGACGACGCTTCTCCGTTTCTTTTCTCCGACGTCTACCCGTATTTCTCCGCTGGATTCTTCCCTTTTGATGAATTTGAGTTTCATTACTCCAAACGCCAGAGGATCGTGCTGGAGCAGAGTTTTTGCTACGGTGGAGTTGGTGGTAACGTGGGTGGCGGAGGTGGCGGAGGTGGCTACTTTCCTTCGGGTTTGTTGGATGGGAGAGTGGATAATGTTGAAATGATGAACAATGGCAATTGCTCGAAGACGAAACAGTTGGTGTCGCCGAGTAACACCTTATCGGTGCAGACGATTGCGGCCCGGGAACGGCGGAGGAAGATTACGGCGAAGACGCAGGAGCTTGGAGAGCTGATTCCGGGCGGTGTCAAGATGAACACTGCTGAAATGCTTAATTCTGCTTTCAAATATGTCAAATTCTTGCAAGCCCAAGTTGCCATTTTACAACTTAAGCAAGAAACAGAGCATGAACTAGAAGAACAAGAAACAGAGGATCTGCAGATTCTTGAATCCGCCATGATTCAAGAGAAATTATACTCAGAAGAACAGTGTTTAGTTCCAAAAGGGTTTGTTCAAAATCTTGCTAATTTCCCGGAGATTCAATCCCATCCGTCCATTTCAAACTCCATCAATCAGATCCTTAAAACAAGCGGCTAG

Protein sequence

MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLVSPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTSG

Homology

[Close]

BLAST of CmoCh18G005050 vs. ExPASy Swiss-Prot
Match: Q84RD0 (Transcription factor bHLH53 OS=Arabidopsis thaliana OX=3702 GN=BHLH53 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-24
Identity = 70/126 (55.56%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 121 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 180
           S   TLS Q+IAAR RRR+I  KT ELG+LIPGG K+NTAEM  +A KYVKFLQ+QV IL
Sbjct: 160 SKKPTLSSQSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGIL 219

Query: 181 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 240
           QL Q T+      + E   +LES  IQEKL +EE CLVP   VQ+L     I   P+IS 
Sbjct: 220 QLMQTTKKGSSNVQMETQYLLESQAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISR 279

Query: 241 SINQIL 247
            IN++L
Sbjct: 280 EINKLL 285

[Close]

BLAST of CmoCh18G005050 vs. ExPASy Swiss-Prot
Match: Q9SA82 (Transcription factor bHLH52 OS=Arabidopsis thaliana OX=3702 GN=BHLH52 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.2e-24
Identity = 72/136 (52.94%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 116 TKQLVSPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQA 175
           T+Q  +    LS Q+IAAR+RRR+IT KTQELG+LIPG  K NTAEM N+A KYVKFLQA
Sbjct: 126 TEQGDTKKRELSAQSIAARKRRRRITEKTQELGKLIPGSQKHNTAEMFNAAAKYVKFLQA 185

Query: 176 QVAILQLKQETEHELEEQET-EDLQ-ILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQ 235
           Q+ ILQLKQ     L+  +   ++Q +L S  IQEKL +EE C+VP+  VQ L     I 
Sbjct: 186 QIEILQLKQTKMQTLDSSKVGREMQFLLGSQEIQEKLSTEEVCVVPREMVQVLKAEECIL 245

Query: 236 SHPSISNSINQILKTS 250
           ++P IS  IN++L T+
Sbjct: 246 TNPKISRDINKLLSTN 261

[Close]

BLAST of CmoCh18G005050 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-08
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 129 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 182
           QT+AAR+RR +I+ K + L  L+PGG KM+TA ML+ A  Y+KFL+AQV  L+
Sbjct: 280 QTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]

BLAST of CmoCh18G005050 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 129 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 182
           QT+ AR RR +I+ K + L  ++PGG KM+TA ML+ A +Y KFL+ QV ILQ
Sbjct: 123 QTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of CmoCh18G005050 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 129 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 181
           Q++AAR RR +I+ + + L  L+PGG KM+TA ML+ A +YVKFL+ Q+ +L
Sbjct: 130 QSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of CmoCh18G005050 vs. ExPASy TrEMBL
Match: A0A6J1GUV4 (transcription factor bHLH52-like OS=Cucurbita moschata OX=3662 GN=LOC111457139 PE=4 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 60
           MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF
Sbjct: 28  MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 87

Query: 61  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV 120
           HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV
Sbjct: 88  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV 147

Query: 121 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 180
           SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL
Sbjct: 148 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 207

Query: 181 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 240
           QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN
Sbjct: 208 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 267

Query: 241 SINQILKTSG 251
           SINQILKTSG
Sbjct: 268 SINQILKTSG 277

[Close]

BLAST of CmoCh18G005050 vs. ExPASy TrEMBL
Match: A0A6J1K695 (uncharacterized protein LOC111490459 OS=Cucurbita maxima OX=3661 GN=LOC111490459 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 235/253 (92.89%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 1   MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 60
           MSPDLFFLPPPHLDYVPAMPDDSV  PTVAPFFDDASPFLFSDVYPYFSA  FPFDEFEF
Sbjct: 28  MSPDLFFLPPPHLDYVPAMPDDSVLFPTVAPFFDDASPFLFSDVYPYFSAEIFPFDEFEF 87

Query: 61  HYSKRQRIVLEQSFCYGGVGGNVG---GGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTK 120
           HYSKRQRIVLEQSFCYGGVGGNVG   GGGGGGGYFP GLLDGR+DN EMMNN NCSKTK
Sbjct: 88  HYSKRQRIVLEQSFCYGGVGGNVGGGCGGGGGGGYFPLGLLDGRMDNAEMMNNSNCSKTK 147

Query: 121 QLVSPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQV 180
           QL S SN  SVQTIAARERRR+ITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQV
Sbjct: 148 QLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQV 207

Query: 181 AILQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPS 240
           AILQLKQETEHELEEQETEDLQIL+SAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHP 
Sbjct: 208 AILQLKQETEHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPF 267

Query: 241 ISNSINQILKTSG 251
           ISNSINQILKTSG
Sbjct: 268 ISNSINQILKTSG 280

[Close]

BLAST of CmoCh18G005050 vs. ExPASy TrEMBL
Match: A0A6J1KJ69 (transcription factor bHLH52 OS=Cucurbita maxima OX=3661 GN=LOC111495708 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.6e-85
Identity = 191/281 (67.97%), Postives = 209/281 (74.38%), Query Frame = 0


Query: 1   MSPDLFFLPPPHL------DYVPAMPDDSVFIPT-VAPFFDDASPFLFSDVYPYF----- 60
           +SP+LF LPPP L      DY+PA  D SVF PT  APFFDD SPF+FSDVYPYF     
Sbjct: 28  ISPELFHLPPPQLLPDPTFDYLPAAVDHSVFFPTATAPFFDDVSPFVFSDVYPYFPTPAV 87

Query: 61  ------SAGFFPFDEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFP-----SGL 120
                 SA FFP DEFEF+  KRQR+V+EQSFCYGG GGNV   GG GGYFP     S  
Sbjct: 88  DEFVPVSAEFFPCDEFEFYCPKRQRVVMEQSFCYGGGGGNV---GGEGGYFPLPEFFSDQ 147

Query: 121 LDGRVDNVEMMNNGNCSKTKQLVSP---------SNTLSVQTIAARERRRKITAKTQELG 180
            DGR+ N EMMN G+C K    + P         SN LS QTIAARERRRKITAKTQELG
Sbjct: 148 WDGRLGNAEMMNKGDCLKGTPTLVPLPLPSPSPSSNNLSAQTIAARERRRKITAKTQELG 207

Query: 181 ELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQE 240
           EL+PGG KMNTAEML+SAFKYVKFLQAQVAILQ+KQETE E E+ ETEDLQILES MIQE
Sbjct: 208 ELVPGGSKMNTAEMLSSAFKYVKFLQAQVAILQVKQETEQEQEQTETEDLQILESTMIQE 267

Query: 241 KLYSEEQCLVPKGFVQNLANFPEIQSHPSISNSINQILKTS 250
           KLY+EE+CLVPKGFVQNLAN  EIQS+PSI NSINQIL T+
Sbjct: 268 KLYAEEKCLVPKGFVQNLANSSEIQSNPSILNSINQILHTN 305

[Close]

BLAST of CmoCh18G005050 vs. ExPASy TrEMBL
Match: A0A6J1EGS4 (transcription factor bHLH52-like OS=Cucurbita moschata OX=3662 GN=LOC111434050 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.7e-84
Identity = 188/274 (68.61%), Postives = 205/274 (74.82%), Query Frame = 0


Query: 1   MSPDLFFLPPPHL------DYVPAMPDDSVFIPT-VAPFFDDASPFLFSDVYPYF----- 60
           +SP+LF LPPP L      DY+ A  D SVF PT  APFFDD SPF+FSDVYPYF     
Sbjct: 28  ISPELFHLPPPQLLPDPAFDYLHAAVDHSVFFPTATAPFFDDVSPFVFSDVYPYFPTPAV 87

Query: 61  ------SAGFFPFDEFEFHYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFP-----SGL 120
                 SA FFP DEFEF+  KRQR+V+EQSFCYGG GGNV   GG GGYFP     S  
Sbjct: 88  DSFVPVSAEFFPCDEFEFYCPKRQRVVMEQSFCYGGGGGNV---GGDGGYFPLPEFFSDQ 147

Query: 121 LDGRVDNVEMMNNGNCSKTKQLVSP-----SNTLSVQTIAARERRRKITAKTQELGELIP 180
            DGR+ N E+MN G+C K     +P     SN LS QTIAARERRRKITAKTQELGEL+P
Sbjct: 148 WDGRLGNAELMNKGDCLKGTLTPAPLPAPSSNNLSAQTIAARERRRKITAKTQELGELVP 207

Query: 181 GGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEEQETEDLQILESAMIQEKLYS 240
           GG KMNTAEML+SAFKYVKFLQAQVAILQ+KQETE E E  ETEDLQILES MIQEKLY+
Sbjct: 208 GGSKMNTAEMLSSAFKYVKFLQAQVAILQVKQETEQEQERTETEDLQILESTMIQEKLYA 267

Query: 241 EEQCLVPKGFVQNLANFPEIQSHPSISNSINQIL 247
           EE+CLVPKGFVQNL N PEIQS+PSI NSINQIL
Sbjct: 268 EEKCLVPKGFVQNLVNSPEIQSNPSILNSINQIL 298

[Close]

BLAST of CmoCh18G005050 vs. ExPASy TrEMBL
Match: A0A5A7U090 (Transcription factor bHLH52 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00680 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 9.8e-77
Identity = 186/281 (66.19%), Postives = 203/281 (72.24%), Query Frame = 0


Query: 2   SPDLFFLPPPHLDYVPA---MPDDSVFIPTVAPFF-DDASPFLFSDVYPYFSA------- 61
           SPDL ++PPPHL   PA     DDSVF P     F DDA PFLFSD YPYFSA       
Sbjct: 27  SPDLSYVPPPHLLSDPAAFPYVDDSVFYPAADTLFSDDAFPFLFSDAYPYFSAPSVDEFL 86

Query: 62  ----GFFPFDEFEFHYSKRQRIVLEQSFCYG-GVG-GNVGGG----GGGGGYFP------ 121
                FFPFDEFEFH  KRQR V EQSFC G GVG GNVGGG    G G G+FP      
Sbjct: 87  PVSSQFFPFDEFEFHCPKRQRAVFEQSFCCGEGVGDGNVGGGGEGAGAGAGFFPPPLAEF 146

Query: 122 -SGLLDGRVDNVEMMNNGNCSKTKQLVSP----SNTLSVQTIAARERRRKITAKTQELGE 181
            SG  D R+DN EM N  +C K++   +P    SN LS QTIAARERRRKIT KTQELGE
Sbjct: 147 FSGPWDSRMDNAEMTN--DCLKSQPSPAPPAPSSNNLSAQTIAARERRRKITVKTQELGE 206

Query: 182 LIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEHELEE----QETEDLQILESAM 241
           L+PGG KMNTAEMLNSAFKYVKFLQAQVAILQLKQETE E E+    QETE+L+ILES +
Sbjct: 207 LVPGGSKMNTAEMLNSAFKYVKFLQAQVAILQLKQETEQEQEQEQEGQETENLKILESTL 266

Query: 242 IQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISNSINQIL 247
           IQEKLY EE+CLVPKGF+QNLA+FPEIQSHPSI NSIN+IL
Sbjct: 267 IQEKLYLEEKCLVPKGFIQNLADFPEIQSHPSIFNSINKIL 305

[Close]

BLAST of CmoCh18G005050 vs. NCBI nr
Match: XP_022955064.1 (transcription factor bHLH52-like [Cucurbita moschata])

HSP 1 Score: 485.3 bits (1248), Expect = 3.1e-133
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0


Query: 1   MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 60
           MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF
Sbjct: 28  MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 87

Query: 61  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV 120
           HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV
Sbjct: 88  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV 147

Query: 121 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 180
           SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL
Sbjct: 148 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 207

Query: 181 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 240
           QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN
Sbjct: 208 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 267

Query: 241 SINQILKTSG 251
           SINQILKTSG
Sbjct: 268 SINQILKTSG 277

[Close]

BLAST of CmoCh18G005050 vs. NCBI nr
Match: XP_023542438.1 (transcription factor bHLH52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 462.6 bits (1189), Expect = 2.1e-126
Identity = 239/249 (95.98%), Postives = 242/249 (97.19%), Query Frame = 0


Query: 1   MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 60
           MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFD+ASPFLFSDVYPYFSA FFPFDEFEF
Sbjct: 28  MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDNASPFLFSDVYPYFSAEFFPFDEFEF 87

Query: 61  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV 120
           HYSKRQRIVLEQSFCYGGVGGNVGGGGGG GYFPS LLDGR+DN EMMNNGNCSKTKQL 
Sbjct: 88  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGCGYFPSSLLDGRMDNAEMMNNGNCSKTKQLA 147

Query: 121 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 180
           SPSN LSVQTIAARERRR+ITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL
Sbjct: 148 SPSNALSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 207

Query: 181 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 240
           QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHP ISN
Sbjct: 208 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPFISN 267

Query: 241 SINQILKTS 250
           SINQILKTS
Sbjct: 268 SINQILKTS 276

[Close]

BLAST of CmoCh18G005050 vs. NCBI nr
Match: KAG7012577.1 (Transcription factor bHLH52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461.5 bits (1186), Expect = 4.8e-126
Identity = 240/250 (96.00%), Postives = 242/250 (96.80%), Query Frame = 0


Query: 1   MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 60
           MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSA  FPFDEFEF
Sbjct: 28  MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAEIFPFDEFEF 87

Query: 61  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV 120
           HYSKRQRIVLEQSFCYGGVGGNV  GGG GGYFPSGLLDGR+DN EMMNNGNCSKTKQL 
Sbjct: 88  HYSKRQRIVLEQSFCYGGVGGNV--GGGRGGYFPSGLLDGRMDNAEMMNNGNCSKTKQLA 147

Query: 121 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 180
           SPSN LSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSA+KYVKFLQAQVAIL
Sbjct: 148 SPSNALSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAYKYVKFLQAQVAIL 207

Query: 181 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 240
           QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN
Sbjct: 208 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 267

Query: 241 SINQILKTSG 251
           SINQILKTSG
Sbjct: 268 SINQILKTSG 275

[Close]

BLAST of CmoCh18G005050 vs. NCBI nr
Match: KAG6573429.1 (Transcription factor basic helix-loop-helix 52, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451.1 bits (1159), Expect = 6.4e-123
Identity = 238/250 (95.20%), Postives = 240/250 (96.00%), Query Frame = 0


Query: 1   MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 60
           +SPDLFFLP PHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSA  FPFDEFEF
Sbjct: 28  VSPDLFFLPRPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAEIFPFDEFEF 87

Query: 61  HYSKRQRIVLEQSFCYGGVGGNVGGGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTKQLV 120
           HYSKRQRIVLEQSFCYGGVGGNV  GGG GGYFPSGLLDGR+DN EMMN  NCSKTKQL 
Sbjct: 88  HYSKRQRIVLEQSFCYGGVGGNV--GGGRGGYFPSGLLDGRIDNAEMMN--NCSKTKQLA 147

Query: 121 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 180
           SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL
Sbjct: 148 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 207

Query: 181 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 240
           QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN
Sbjct: 208 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 267

Query: 241 SINQILKTSG 251
           SINQILKTSG
Sbjct: 268 SINQILKTSG 273

[Close]

BLAST of CmoCh18G005050 vs. NCBI nr
Match: XP_022994858.1 (uncharacterized protein LOC111490459 [Cucurbita maxima])

HSP 1 Score: 449.1 bits (1154), Expect = 2.4e-122
Identity = 235/253 (92.89%), Postives = 238/253 (94.07%), Query Frame = 0


Query: 1   MSPDLFFLPPPHLDYVPAMPDDSVFIPTVAPFFDDASPFLFSDVYPYFSAGFFPFDEFEF 60
           MSPDLFFLPPPHLDYVPAMPDDSV  PTVAPFFDDASPFLFSDVYPYFSA  FPFDEFEF
Sbjct: 28  MSPDLFFLPPPHLDYVPAMPDDSVLFPTVAPFFDDASPFLFSDVYPYFSAEIFPFDEFEF 87

Query: 61  HYSKRQRIVLEQSFCYGGVGGNVG---GGGGGGGYFPSGLLDGRVDNVEMMNNGNCSKTK 120
           HYSKRQRIVLEQSFCYGGVGGNVG   GGGGGGGYFP GLLDGR+DN EMMNN NCSKTK
Sbjct: 88  HYSKRQRIVLEQSFCYGGVGGNVGGGCGGGGGGGYFPLGLLDGRMDNAEMMNNSNCSKTK 147

Query: 121 QLVSPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQV 180
           QL S SN  SVQTIAARERRR+ITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQV
Sbjct: 148 QLPSSSNASSVQTIAARERRRRITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQV 207

Query: 181 AILQLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPS 240
           AILQLKQETEHELEEQETEDLQIL+SAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHP 
Sbjct: 208 AILQLKQETEHELEEQETEDLQILDSAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPF 267

Query: 241 ISNSINQILKTSG 251
           ISNSINQILKTSG
Sbjct: 268 ISNSINQILKTSG 280

[Close]

BLAST of CmoCh18G005050 vs. TAIR 10
Match: AT2G34820.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.3e-25
Identity = 70/126 (55.56%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 121 SPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 180
           S   TLS Q+IAAR RRR+I  KT ELG+LIPGG K+NTAEM  +A KYVKFLQ+QV IL
Sbjct: 160 SKKPTLSSQSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGIL 219

Query: 181 QLKQETEHELEEQETEDLQILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQSHPSISN 240
           QL Q T+      + E   +LES  IQEKL +EE CLVP   VQ+L     I   P+IS 
Sbjct: 220 QLMQTTKKGSSNVQMETQYLLESQAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNISR 279

Query: 241 SINQIL 247
            IN++L
Sbjct: 280 EINKLL 285

[Close]

BLAST of CmoCh18G005050 vs. TAIR 10
Match: AT1G30670.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-25
Identity = 72/136 (52.94%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 116 TKQLVSPSNTLSVQTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQA 175
           T+Q  +    LS Q+IAAR+RRR+IT KTQELG+LIPG  K NTAEM N+A KYVKFLQA
Sbjct: 126 TEQGDTKKRELSAQSIAARKRRRRITEKTQELGKLIPGSQKHNTAEMFNAAAKYVKFLQA 185

Query: 176 QVAILQLKQETEHELEEQET-EDLQ-ILESAMIQEKLYSEEQCLVPKGFVQNLANFPEIQ 235
           Q+ ILQLKQ     L+  +   ++Q +L S  IQEKL +EE C+VP+  VQ L     I 
Sbjct: 186 QIEILQLKQTKMQTLDSSKVGREMQFLLGSQEIQEKLSTEEVCVVPREMVQVLKAEECIL 245

Query: 236 SHPSISNSINQILKTS 250
           ++P IS  IN++L T+
Sbjct: 246 TNPKISRDINKLLSTN 261

[Close]

BLAST of CmoCh18G005050 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-09
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 129 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 182
           QT+AAR+RR +I+ K + L  L+PGG KM+TA ML+ A  Y+KFL+AQV  L+
Sbjct: 280 QTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

[Close]

BLAST of CmoCh18G005050 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 58.5 bits (140), Expect = 8.7e-09
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 129 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAILQ 182
           QT+ AR RR +I+ K + L  ++PGG KM+TA ML+ A +Y KFL+ QV ILQ
Sbjct: 123 QTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of CmoCh18G005050 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-08
Identity = 26/52 (50.00%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 129 QTIAARERRRKITAKTQELGELIPGGVKMNTAEMLNSAFKYVKFLQAQVAIL 181
           Q++AAR RR +I+ + + L  L+PGG KM+TA ML+ A +YVKFL+ Q+ +L
Sbjct: 130 QSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

The following BLAST results are available for this feature:

BLAST of CmoCh18G005050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84RD0	1.9e-24	55.56	Transcription factor bHLH53 OS=Arabidopsis thaliana OX=3702 GN=BHLH53 PE=2 SV=1	[more]
Q9SA82	3.2e-24	52.94	Transcription factor bHLH52 OS=Arabidopsis thaliana OX=3702 GN=BHLH52 PE=2 SV=1	[more]
Q8S3D2	7.1e-08	54.72	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]
O81313	1.2e-07	52.83	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
Q9LXD8	4.6e-07	50.00	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]

BLAST of CmoCh18G005050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GUV4	1.5e-133	100.00	transcription factor bHLH52-like OS=Cucurbita moschata OX=3662 GN=LOC111457139 P...	[more]
A0A6J1K695	1.2e-122	92.89	uncharacterized protein LOC111490459 OS=Cucurbita maxima OX=3661 GN=LOC111490459...	[more]
A0A6J1KJ69	2.6e-85	67.97	transcription factor bHLH52 OS=Cucurbita maxima OX=3661 GN=LOC111495708 PE=4 SV=...	[more]
A0A6J1EGS4	3.7e-84	68.61	transcription factor bHLH52-like OS=Cucurbita moschata OX=3662 GN=LOC111434050 P...	[more]
A0A5A7U090	9.8e-77	66.19	Transcription factor bHLH52 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CmoCh18G005050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955064.1	3.1e-133	100.00	transcription factor bHLH52-like [Cucurbita moschata]	[more]
XP_023542438.1	2.1e-126	95.98	transcription factor bHLH52-like [Cucurbita pepo subsp. pepo]	[more]
KAG7012577.1	4.8e-126	96.00	Transcription factor bHLH52, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KAG6573429.1	6.4e-123	95.20	Transcription factor basic helix-loop-helix 52, partial [Cucurbita argyrosperma ...	[more]
XP_022994858.1	2.4e-122	92.89	uncharacterized protein LOC111490459 [Cucurbita maxima]	[more]

BLAST of CmoCh18G005050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34820.1	1.3e-25	55.56	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G30670.1	2.3e-25	52.94	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	5.1e-09	54.72	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	8.7e-09	52.83	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.3e-08	50.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 130..179 e-value: 4.4E-9 score: 46.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 133..174 e-value: 2.6E-5 score: 24.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 124..173 score: 11.547132
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 127..200 e-value: 4.0E-10 score: 41.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 126..185
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 106..242
None	No IPR available	PANTHER	PTHR16223:SF49	TRANSCRIPTION FACTOR BHLH52-RELATED	coord: 106..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G005050.1	CmoCh18G005050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding