CmoCh18G003630 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003630
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Squamosa promoter-binding-like protein
Location	Cmo_Chr18: 2373004 .. 2374802 (+)
RNA-Seq Expression	CmoCh18G003630
Synteny	CmoCh18G003630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATGACTCAAAAAATGGAGTTTGTGGTCCTTAGCCTCTGGTAGTAATATTACTACTCCTAATCTCCCCTCTTCTTTTCTTACCAACACCCACCAATTCTTTCTCTTCTTACTCTCTCTGCCTCTGCCTTTCTCTTCTGAAATGGTCACCGGAAAAGCCGATGGAAAACGGAGACTAAATTACTACGACGTGGAGGAGGAGGACGACGAGGAGGAGGAAGAGGCGGACGAGGAGGAAGACGGTGATGGAGAATTAGGGTTTGGTGAGGATTTCAATAAGAAGAAGAAAATTGTGGATGGTGGTGGTTCTTCTAATAAAGGATCAGGATCTGGGTACGGTGGAGCTGCGGCGACGGCGGCGGTAGCGGTAGCACCGTCGTGTCAAGCGGATAATTGTAATGCCGATCTGTCAGGTTCGAAGCGCTACCATCGCCGCCATAAGGTCTGTGAGTTTCATGCCAAAGCTCCGGCGGTTGTTGTTGCCGGAATCCACCAACGGTTCTGCCAACAATGCAGCAGGTAGTTTTTGGATCAAAACCCTAATCTTAGATCTGCTTCTAATTCTATGGCTTAAGCTATGTTTTAAGCTAACATGAAATTTAATTAATCATATGAGGATATAACATGATTAATTTTTTTCATCTCTATCATGAAATTGAGGATTTAAGATTAATAGTGTCATGTATCTGACAAAGTTCAGGGATAATAATAGATAGTTAGGAATGACGTACGAATAATAGATGGTCGAGAACAATATTTTCACAATAGTATATGATATAGTCTACTTTGGACACAAACCCTCGTGATTTTTCTTTCACTTTCTTTAAAAAAAGTCCTGATACCAATGGGACGTTGTCCTTCAGTTATATACTGTGCTCTTATCTAGCTTAGTTCTTCCTTTAGGGACGGTAAACATACTGTCTTTCTATCTCCCTACTAATAGTTATATACTGTGAACCGTTGTTGTTACTCTCTTGCTTGCCTATATAACACCTCTTTCAAAATCTCTTTCGAAAATCTCTTACCCTCGTTTTTTAAAACCTTTTCCTAAACCGGGGCCAGAGGCTCGAGCATACGTCACTTGGCCGTAGACGACGTAAGAACAAATTGGCTTAGCTCACTTGTTGCTGAAAAGTGAGTGTTGCACAATTACAAGTCCGTTGCCATCAAAAGTGTGATTGTGACAAGAAGTGTTAATCTAAGGCATGAGTCAGATACTAATTGACAGGAACAACAAATCCGATGCAATATACATCTGTGATCATTTTCGTTCCTAATGTAGAGCTCCAGTCGTAGTCCCGACATAGATTGCTTTCCATCTAAAGAACTTTGGTTGACCCTCATCATCAATCTCTTTGGGTTATTGAGTATTAGACAAAATTGTATGTAGGATTTGTTTAATGGTGTTTAAAGCCATATTAGTTGTGAATTGTTCCTAGTATCAAACATTTGATCACGTTAAGCTAAAGATACATGATTTGTGTTCCTCTCTGAAATGGAGATTTCATGGGCTTATGGAGTTTGATCTAACAAAAAGGAGTTGTCGGAAGCGGTTGGCCGGACATAACCAGCGGCGGAGGAAGAGCTCATCGGACGTCCATGGCGAAAGCTGAAGCTAGGTAGCAATGACCAGAATGATGAACATTGATGTAGTTTATAGGGTCTTCCTTCCCCAAGCAAATTTTTCTTGGTTTTGTTGTTGGTCAATGCTTACATTATTTTCACCTCTGCTTGCTCTCTCTCTTCTGTCAATCCCCAGCTTTTGGCTTTGTACTGGAAGACCAATTTATTGCTTTTGTAG

mRNA sequence

AATGACTCAAAAAATGGAGTTTGTGGTCCTTAGCCTCTGGTAGTAATATTACTACTCCTAATCTCCCCTCTTCTTTTCTTACCAACACCCACCAATTCTTTCTCTTCTTACTCTCTCTGCCTCTGCCTTTCTCTTCTGAAATGGTCACCGGAAAAGCCGATGGAAAACGGAGACTAAATTACTACGACGTGGAGGAGGAGGACGACGAGGAGGAGGAAGAGGCGGACGAGGAGGAAGACGGTGATGGAGAATTAGGGTTTGGTGAGGATTTCAATAAGAAGAAGAAAATTGTGGATGGTGGTGGTTCTTCTAATAAAGGATCAGGATCTGGGTACGGTGGAGCTGCGGCGACGGCGGCGGTAGCGGTAGCACCGTCGTGTCAAGCGGATAATTGTAATGCCGATCTGTCAGGTTCGAAGCGCTACCATCGCCGCCATAAGGTCTGTGAGTTTCATGCCAAAGCTCCGGCGGTTGTTGTTGCCGGAATCCACCAACGGTTCTGCCAACAATGCAGCAGGAGTTGTCGGAAGCGGTTGGCCGGACATAACCAGCGGCGGAGGAAGAGCTCATCGGACGGTCTTCCTTCCCCAAGCAAATTTTTCTTGGTTTTGTTGTTGGTCAATGCTTACATTATTTTCACCTCTGCTTGCTCTCTCTCTTCTGTCAATCCCCAGCTTTTGGCTTTGTACTGGAAGACCAATTTATTGCTTTTGTAG

Coding sequence (CDS)

ATGGTCACCGGAAAAGCCGATGGAAAACGGAGACTAAATTACTACGACGTGGAGGAGGAGGACGACGAGGAGGAGGAAGAGGCGGACGAGGAGGAAGACGGTGATGGAGAATTAGGGTTTGGTGAGGATTTCAATAAGAAGAAGAAAATTGTGGATGGTGGTGGTTCTTCTAATAAAGGATCAGGATCTGGGTACGGTGGAGCTGCGGCGACGGCGGCGGTAGCGGTAGCACCGTCGTGTCAAGCGGATAATTGTAATGCCGATCTGTCAGGTTCGAAGCGCTACCATCGCCGCCATAAGGTCTGTGAGTTTCATGCCAAAGCTCCGGCGGTTGTTGTTGCCGGAATCCACCAACGGTTCTGCCAACAATGCAGCAGGAGTTGTCGGAAGCGGTTGGCCGGACATAACCAGCGGCGGAGGAAGAGCTCATCGGACGGTCTTCCTTCCCCAAGCAAATTTTTCTTGGTTTTGTTGTTGGTCAATGCTTACATTATTTTCACCTCTGCTTGCTCTCTCTCTTCTGTCAATCCCCAGCTTTTGGCTTTGTACTGGAAGACCAATTTATTGCTTTTGTAG

Protein sequence

MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKGSGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRFCQQCSRSCRKRLAGHNQRRRKSSSDGLPSPSKFFLVLLLVNAYIIFTSACSLSSVNPQLLALYWKTNLLLL

Homology

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BLAST of CmoCh18G003630 vs. ExPASy Swiss-Prot
Match: Q01KM7 (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. indica OX=39946 GN=SPL8 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-22
Identity = 57/89 (64.04%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 78  PSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVA-GIHQRFCQQCSR---------- 137
           P CQA+ C ADLS +KRYHRRHKVCE H+KAP VV A G+HQRFCQQCSR          
Sbjct: 183 PRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDA 242

Query: 138 --SCRKRLAGHNQRRRKSS-SDGLPSPSK 153
             SCRKRLA HN+RRRKS  SDG  S  K
Sbjct: 243 KKSCRKRLADHNRRRRKSKPSDGEHSGEK 271

[Close]

BLAST of CmoCh18G003630 vs. ExPASy Swiss-Prot
Match: Q7XPY1 (Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=SPL8 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.9e-22
Identity = 57/89 (64.04%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 78  PSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVA-GIHQRFCQQCSR---------- 137
           P CQA+ C ADLS +KRYHRRHKVCE H+KAP VV A G+HQRFCQQCSR          
Sbjct: 183 PRCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVTAGGLHQRFCQQCSRFHLLDEFDDA 242

Query: 138 --SCRKRLAGHNQRRRKSS-SDGLPSPSK 153
             SCRKRLA HN+RRRKS  SDG  S  K
Sbjct: 243 KKSCRKRLADHNRRRRKSKPSDGEHSGEK 271

[Close]

BLAST of CmoCh18G003630 vs. ExPASy Swiss-Prot
Match: P93015 (Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 5.1e-22
Identity = 69/157 (43.95%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           M   KA+GKR L     EEE++EE E+ D  E+        E   KK+K     G +   
Sbjct: 3   MRRSKAEGKRSLRELSEEEEEEEETEDEDTFEE-------EEALEKKQK-----GKATSS 62

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SG                 CQ ++C AD+S +K+YH+RHKVC+FHAKAP V ++G+HQRF
Sbjct: 63  SG----------------VCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRF 122

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCR+RLAGHN+RRRKS++D
Sbjct: 123 CQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of CmoCh18G003630 vs. ExPASy Swiss-Prot
Match: Q38740 (Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.7e-22
Identity = 67/137 (48.91%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 19  EEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKGSGSGYGGAAATAAVAVAP 78
           EE++E E+E +EE++   ++ F E   KKKK+  G GS  K   SG    A+   V   P
Sbjct: 27  EEEEEGEDEEEEEQERVVKVNFAESQLKKKKLNLGEGSGGK---SGEKHTASGGGVVAQP 86

Query: 79  SCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRFCQQCS------------R 138
            C  +NC ADL   K+Y++RH+VCE HAKAP V V G+ QRFCQQCS            R
Sbjct: 87  CCLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQTKR 146

Query: 139 SCRKRLAGHNQRRRKSS 144
           SCR+RLAGHN+RRRKSS
Sbjct: 147 SCRRRLAGHNERRRKSS 160

[Close]

BLAST of CmoCh18G003630 vs. ExPASy Swiss-Prot
Match: Q38741 (Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-21
Identity = 66/157 (42.04%), Postives = 86/157 (54.78%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           M T K +GKR +     +E+ +EE++              GED  K + +   G    + 
Sbjct: 1   MDTSKGEGKRVIKLPGSQEQGEEEDD-------------IGEDSKKTRALTPSG---KRA 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGS               SCQ +NC A+++ +K YHRRHKVCEFHAKAP V+ +G+ QRF
Sbjct: 61  SGS------------TQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSGLQQRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCR+RLAGHN+RRRKSS D
Sbjct: 121 CQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSHD 129

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BLAST of CmoCh18G003630 vs. ExPASy TrEMBL
Match: A0A6J1GT00 (Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456848 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.8e-69
Identity = 145/157 (92.36%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG
Sbjct: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF
Sbjct: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRFHGLMEFDLTKRSCRKRLAGHNQRRRKSSSD 157

[Close]

BLAST of CmoCh18G003630 vs. ExPASy TrEMBL
Match: A0A6J1K2Z2 (Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC111490194 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.7e-60
Identity = 136/157 (86.62%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           M TGKADGKRRLNYYD  EED+EEEEE DEEEDGDGELGFGEDFNKKKKIV GGG SNKG
Sbjct: 1   MATGKADGKRRLNYYDT-EEDEEEEEEEDEEEDGDGELGFGEDFNKKKKIV-GGGGSNKG 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAAA AAVAVAPSCQADNC+ADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF
Sbjct: 61  SGSGYGGAAA-AAVAVAPSCQADNCSADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRFHGLMEFDLTKRSCRKRLAGHNQRRRKSSSD 154

[Close]

BLAST of CmoCh18G003630 vs. ExPASy TrEMBL
Match: A0A6J1EH14 (Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC111434224 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.6e-49
Identity = 117/157 (74.52%), Postives = 122/157 (77.71%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           M TGKADGKRRLNYYD+EEE++EEEEE    E  DGELGFG DFNKKKK +  GG SNK 
Sbjct: 1   MATGKADGKRRLNYYDMEEEEEEEEEEV---EVVDGELGFGGDFNKKKKTLCSGGGSNKK 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAA       APSCQADNCNADLS SKRYH RHKVCEFHAKA AV+VAGIHQRF
Sbjct: 61  SGSGYGGAA-----TAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSD 149

[Close]

BLAST of CmoCh18G003630 vs. ExPASy TrEMBL
Match: A0A6J1KHJ1 (Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC111495800 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 3.3e-48
Identity = 116/157 (73.89%), Postives = 121/157 (77.07%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           M TGKADGKRRLNYYD+EEE++EEE    E E  DGELGFG DFNKKKK +  GG SNK 
Sbjct: 1   MATGKADGKRRLNYYDMEEEEEEEE----EVEVVDGELGFGGDFNKKKKTLSSGGGSNKK 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAA       APSCQADNCNADLS SKRYH RHKVCEFHAKA AV+VAGIHQRF
Sbjct: 61  SGSGYGGAA-----TAAPSCQADNCNADLSSSKRYHCRHKVCEFHAKALAVMVAGIHQRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRFHGLQEFDETKRSCRKRLAGHNQRRRKSSSD 148

[Close]

BLAST of CmoCh18G003630 vs. ExPASy TrEMBL
Match: A0A1S3B6H6 (squamosa promoter-binding-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103486540 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 3.6e-47
Identity = 113/163 (69.33%), Postives = 124/163 (76.07%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGD------GELGFGEDFNKKKKIVDGG 60
           M TGKADGKRRLNYY++EEED+E+EEE +EE++ +      G LGF  DFNKKKK++  G
Sbjct: 1   MATGKADGKRRLNYYEMEEEDEEDEEEEEEEDEDEEQEIDGGGLGFSGDFNKKKKVLTSG 60

Query: 61  GSSNKGSGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVA 120
           GSSNK SGSG+G     AA    P CQADNCNADLSGSKRYHRRHKVCEFHAKAPAV VA
Sbjct: 61  GSSNKKSGSGFGTGPPAAA---PPPCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVAVA 120

Query: 121 GIHQRFCQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           GI QRFCQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 GIDQRFCQQCSRFHGLQEFDDTKRSCRKRLAGHNQRRRKSSSD 160

[Close]

BLAST of CmoCh18G003630 vs. NCBI nr
Match: KAG6573280.1 (Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.6 bits (701), Expect = 6.3e-70
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           MVTGKADGKRRLNYY+VEE+D+EEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG
Sbjct: 1   MVTGKADGKRRLNYYNVEEDDEEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF
Sbjct: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120

Query: 121 CQQCSRSCRKRLAGHNQRRRKSSSD 146
           CQQCSRSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRSCRKRLAGHNQRRRKSSSD 145

[Close]

BLAST of CmoCh18G003630 vs. NCBI nr
Match: XP_022954650.1 (squamosa promoter-binding-like protein 3 [Cucurbita moschata])

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 145/157 (92.36%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG
Sbjct: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF
Sbjct: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRFHGLMEFDLTKRSCRKRLAGHNQRRRKSSSD 157

[Close]

BLAST of CmoCh18G003630 vs. NCBI nr
Match: KAG7012445.1 (Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-67
Identity = 143/157 (91.08%), Postives = 145/157 (92.36%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           MVTGKADGKRRLNYY+VEE+DDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG
Sbjct: 36  MVTGKADGKRRLNYYNVEEDDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 95

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF
Sbjct: 96  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 155

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 156 CQQCSRFHGLMEFDLTKRSCRKRLAGHNQRRRKSSSD 192

[Close]

BLAST of CmoCh18G003630 vs. NCBI nr
Match: XP_023541125.1 (LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 242.3 bits (617), Expect = 3.5e-60
Identity = 135/157 (85.99%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           MVTGKADGKRRLNYYD EE++DEEEE  DEEEDGDGELGFGEDFNKKKKIV G GSSNKG
Sbjct: 1   MVTGKADGKRRLNYYDAEEDEDEEEE--DEEEDGDGELGFGEDFNKKKKIVGGDGSSNKG 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAAA A VAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIH RF
Sbjct: 61  SGSGYGGAAA-AVVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHXRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRFHGLMEFDLTKRSCRKRLAGHNQRRRKSSSD 154

[Close]

BLAST of CmoCh18G003630 vs. NCBI nr
Match: XP_022994484.1 (squamosa promoter-binding-like protein 3 [Cucurbita maxima])

HSP 1 Score: 241.1 bits (614), Expect = 7.7e-60
Identity = 136/157 (86.62%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           M TGKADGKRRLNYYD  EED+EEEEE DEEEDGDGELGFGEDFNKKKKIV GGG SNKG
Sbjct: 1   MATGKADGKRRLNYYDT-EEDEEEEEEEDEEEDGDGELGFGEDFNKKKKIV-GGGGSNKG 60

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SGSGYGGAAA AAVAVAPSCQADNC+ADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF
Sbjct: 61  SGSGYGGAAA-AAVAVAPSCQADNCSADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCRKRLAGHNQRRRKSSSD
Sbjct: 121 CQQCSRFHGLMEFDLTKRSCRKRLAGHNQRRRKSSSD 154

[Close]

BLAST of CmoCh18G003630 vs. TAIR 10
Match: AT2G33810.1 (squamosa promoter binding protein-like 3 )

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-23
Identity = 69/157 (43.95%), Postives = 90/157 (57.32%), Query Frame = 0


Query: 1   MVTGKADGKRRLNYYDVEEEDDEEEEEADEEEDGDGELGFGEDFNKKKKIVDGGGSSNKG 60
           M   KA+GKR L     EEE++EE E+ D  E+        E   KK+K     G +   
Sbjct: 3   MRRSKAEGKRSLRELSEEEEEEEETEDEDTFEE-------EEALEKKQK-----GKATSS 62

Query: 61  SGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRF 120
           SG                 CQ ++C AD+S +K+YH+RHKVC+FHAKAP V ++G+HQRF
Sbjct: 63  SG----------------VCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRF 122

Query: 121 CQQCS------------RSCRKRLAGHNQRRRKSSSD 146
           CQQCS            RSCR+RLAGHN+RRRKS++D
Sbjct: 123 CQQCSRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

[Close]

BLAST of CmoCh18G003630 vs. TAIR 10
Match: AT1G02065.1 (squamosa promoter binding protein-like 8 )

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-21
Identity = 52/87 (59.77%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 67  GAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAGIHQRFCQQCS- 126
           G +  A     P CQA+ CNADLS +K YHRRHKVCEFH+KA  VV AG+ QRFCQQCS 
Sbjct: 175 GESGMANSLSTPRCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSR 234

Query: 127 -----------RSCRKRLAGHNQRRRK 142
                      RSCRKRLA HN+RRRK
Sbjct: 235 FHLLSEFDNGKRSCRKRLADHNRRRRK 261

[Close]

BLAST of CmoCh18G003630 vs. TAIR 10
Match: AT3G60030.1 (squamosa promoter-binding protein-like 12 )

HSP 1 Score: 95.1 bits (235), Expect = 6.4e-20
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 0


Query: 54  GGSSNKGSG---SGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPA 113
           GG++ +G+G   +  GG   + A+     CQ DNC ADLS  K YHRRHKVCE H+KA  
Sbjct: 102 GGNNIEGNGVKKTKLGGGIPSRAIC----CQVDNCGADLSKVKDYHRRHKVCEIHSKATT 161

Query: 114 VVVAGIHQRFCQQCS------------RSCRKRLAGHNQRRRKSSSD 146
            +V GI QRFCQQCS            RSCR+RLAGHN+RRRK++ D
Sbjct: 162 ALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPD 204

[Close]

BLAST of CmoCh18G003630 vs. TAIR 10
Match: AT1G76580.1 (Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein )

HSP 1 Score: 92.4 bits (228), Expect = 4.1e-19
Identity = 53/106 (50.00%), Postives = 61/106 (57.55%), Query Frame = 0


Query: 56  SSNKGSGSGYGGAAATAAVAVAPSCQADNCNADLSGSKRYHRRHKVCEFHAKAPAVVVAG 115
           S + GSG G GG          P CQ DNC  DLS +K YHRRHKVCE H+KA   +V  
Sbjct: 66  SGSPGSGGGGGGN--------YPKCQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGK 125

Query: 116 IHQRFCQQCS------------RSCRKRLAGHNQRRRKSSSDGLPS 150
             QRFCQQCS            RSCR+RL GHN+RRRK+  D + S
Sbjct: 126 QMQRFCQQCSRFHLLSEFDEGKRSCRRRLDGHNRRRRKTQPDAITS 163

[Close]

BLAST of CmoCh18G003630 vs. TAIR 10
Match: AT2G42200.1 (squamosa promoter binding protein-like 9 )

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-18
Identity = 53/117 (45.30%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 44  FNKKKKIVDGGGSSNKGSGSGY-------GGAAATAAVAVAPSCQADNCNADLSGSKRYH 103
           F +K    DGGG S   S  G        GG+  +  +   P CQ + C  DL+ +K Y+
Sbjct: 34  FGQKIYFEDGGGGSGSSSSGGRSNRRVRGGGSGQSGQI---PRCQVEGCGMDLTNAKGYY 93

Query: 104 RRHKVCEFHAKAPAVVVAGIHQRFCQQCS------------RSCRKRLAGHNQRRRK 142
            RH+VC  H+K P V VAGI QRFCQQCS            RSCR+RLAGHN+RRRK
Sbjct: 94  SRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRSCRRRLAGHNERRRK 147

The following BLAST results are available for this feature:

BLAST of CmoCh18G003630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01KM7	3.9e-22	64.04	Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. indica OX=39946 ...	[more]
Q7XPY1	3.9e-22	64.04	Squamosa promoter-binding-like protein 8 OS=Oryza sativa subsp. japonica OX=3994...	[more]
P93015	5.1e-22	43.95	Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=SPL3...	[more]
Q38740	8.7e-22	48.91	Squamosa promoter-binding protein 2 OS=Antirrhinum majus OX=4151 GN=SBP2 PE=2 SV...	[more]
Q38741	2.5e-21	42.04	Squamosa promoter-binding protein 1 OS=Antirrhinum majus OX=4151 GN=SBP1 PE=2 SV...	[more]

BLAST of CmoCh18G003630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GT00	5.8e-69	92.36	Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1K2Z2	3.7e-60	86.62	Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114901...	[more]
A0A6J1EH14	8.6e-49	74.52	Squamosa promoter-binding-like protein OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1KHJ1	3.3e-48	73.89	Squamosa promoter-binding-like protein OS=Cucurbita maxima OX=3661 GN=LOC1114958...	[more]
A0A1S3B6H6	3.6e-47	69.33	squamosa promoter-binding-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103486540...	[more]

BLAST of CmoCh18G003630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573280.1	6.3e-70	97.93	Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022954650.1	1.2e-68	92.36	squamosa promoter-binding-like protein 3 [Cucurbita moschata]	[more]
KAG7012445.1	1.0e-67	91.08	Squamosa promoter-binding protein 1, partial [Cucurbita argyrosperma subsp. argy...	[more]
XP_023541125.1	3.5e-60	85.99	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 3 [Cucurbita pepo su...	[more]
XP_022994484.1	7.7e-60	86.62	squamosa promoter-binding-like protein 3 [Cucurbita maxima]	[more]

BLAST of CmoCh18G003630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33810.1	3.6e-23	43.95	squamosa promoter binding protein-like 3	[more]
AT1G02065.1	1.5e-21	59.77	squamosa promoter binding protein-like 8	[more]
AT3G60030.1	6.4e-20	51.40	squamosa promoter-binding protein-like 12	[more]
AT1G76580.1	4.1e-19	50.00	Squamosa promoter-binding protein-like (SBP domain) transcription factor family ...	[more]
AT2G42200.1	1.2e-18	45.30	squamosa promoter binding protein-like 9	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036893	SBP domain superfamily	GENE3D	4.10.1100.10		coord: 75..155 e-value: 1.7E-23 score: 84.6
IPR036893	SBP domain superfamily	SUPERFAMILY	103612	SBT domain	coord: 78..145
IPR004333	SBP domain	PFAM	PF03110	SBP	coord: 80..141 e-value: 5.0E-19 score: 68.4
IPR004333	SBP domain	PROSITE	PS51141	ZF_SBP	coord: 77..142 score: 23.717449
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
IPR044817	Squamosa promoter-binding-like protein	PANTHER	PTHR31251	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	coord: 38..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G003630.1	CmoCh18G003630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009908	flower development
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046872	metal ion binding