CmoCh18G003510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G003510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	BHLH domain-containing protein
Location	Cmo_Chr18: 2297311 .. 2300966 (-)
RNA-Seq Expression	CmoCh18G003510
Synteny	CmoCh18G003510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACTATTCTTCGAAAAAACCAGAACTTATTAAGGTTCTCAAGTTTCCAACCATGACGGACAACTTCATCCATTATTCAACATCGACCAAAACGGATAGAAAGATCATAGAGATGAAGACCCTTTTCTCCACACTCCATTCTCTTGTCCCCAACCAAAGCTCAACGGTTTCGTTTTTTTTTTGTACTCTATATTTTTATCTTGTTTAGATGATGAGAAAATTTGTTTAAATAGAAGATTTTGATTTACTTGTAGGAAGGTGAAACGACACTACCGGTTCAGTTAGAAAATGCCACAAATTATATAAGACAATTGAAGGAGAACGTAGAGAAATTGAAAGAGAAGAGAGAGAAGTTAATGGGATCACAAGAAGGTGAAATTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCATTGGAGTTTCTCTTGACTACTGGATCTGATTATCACTTGGTTTTAAGTCAAATCCTTCAGCTGCTTCAAGAAAACGAAACTCAGATCGTCCATATCAATCACTCAACGATCATAGATCGAGTTTTTCACAAGATAGTAGCTCAGGTAAGATAATACATCAAATGTTTCTGATTAATTACATGAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATCCTCTAATTAATTACATAAATCAATTATAATGGGTAAGTAAGTTGATAATATTTGTGACAATTGAAAACTAGATGGTGGGAGAAGGGATGAACTCCGAAGGTGTTGATGGAGAAAGGATCTGTGAGACAGTGAAGAAGTTTGTTTCACAGTACAAAGATGGTAAATAGACCGTTTAATGTTTGTCTAAAACATTGACTAATCTTGAAGATTTACGATGTTTGCATTGTAATATGACGCTTTCGTTTGCATTTTAATATGACGCTTTAAGGCAGGTATAAATGCAAATCTATAATTTTTAAATGATGAACTTTCTTCACTAATTTTTGTTTAAAATAAAAGATGAACTTTTCTCATTATTCATATTAGATGTTCATTATTTATGTTTCTTAAATAACGAGTTCGTATTCAACGAGCTTTAACATCTTCAGATCCCTAATTGAATTTTGAGACTATGGCTCGGGGTCCTAACTGGACCTCTTTGAGCTTGTCTTCGAAACTCATGTCGCCTCATTGTCTCCAATCTTTGCTTATGTCTCCATTTGACATTAACACACACTCTTCTTAGTGTGTTGGATGATACATCATCCTATTCAGTTGCATCATTATACTTGTTTGTCTTAACTCTCACCTAGTCGAATGGACGCCATGTGAAGGTCACCACCTTATCTGTTGATATGTGGGAGTCAGAACCTACCGACTGCAACTCACACTTGTCTCGTGCCATGTGCAGTCGATTGAACAAATCTTTGGCAAAAACACATCATCTAGGATACCCCACCACTTTTTACTTGCATTTGGTAGCTTATTCCTAGAGTTCAATTGTGTCAATACGTGATTTAAAGCCCTTGTCTTTATAGGTTTGGTCAAGAATCTTAAAAGGTTGGGTTAAAAACACTTTTGATATCCAACTTAATAGTGCGTTTGCACATTATTCCCATAAAATTGGAGTGATGCTCAATCAATTTTTTAAAAAATTAATTTGAAATAAGTAATTTTTTGGTGAAATTTTTGATATCGAATATTAAAAAAGGCTTACTAGTTTTAACTATGAATCCTCCCATGCTTTCATCGTTATAAAAATTAATCGAATATCTGAAGACAAAAACACTTGTTTGAGATTCGAATCATTCCACAAAGCAAAATTGATCATGTTGAGCATGAATGATTTTACATGTAACCTAAACTATATACAATTGCAAAGAAATTTAGTCATTGGTGAAAGAAAAGCACAAATGCTCTTTTTACAACATTTTTCAAGTTTGTCGAACAAAAATAACATACATGGCATTATATAGCCATAAAATGTAAACTCTTAACCTTTTATGAGGCTTTCAAAAAGTTGTAACCTTCCTACTTTATTATCATAATTAACTATACTTTACGGCCATAGTTAGCCACTATGTATAGACCTTAAAATACATTAAAGAAACACCAACTAAATTATTCTAAATTATGATTCACCCAAAACTTATAACAACGAGGCTTCATTCTTCTTCAATGTGGCATGAACTGAAATATATTTTGATAATCTTAACAACATTTTTTTCACATCTTCATTGAAGTATATTGTATGATTGATATCTCTTGGTTCATATCGTCCCTTCTCAAAGTTTAAGAATAAAATGTTGTTGACTTATCGTGAGAAAATTTAACTGTCGTGACTTGATTTCATGGCTTTTGCAGTTGACACCGTCATCCATATATGAGACTCCTACATTTGTTTTAAAAAATGCTAAACATGGCTCGAGTATTTTTAAAGGTCATCTTTTATAATAATTTCACATTACTAAAAGAATTTTGAATGTATAGTCCACTACTCGTGTTAATTTTTTCTCGATCGATTATATCGATCGTTAATCATTTTCCGTTGAACTTTTATGAACGAAGAGAGAATAATTCTTATCCCCAAAGTTGTGGTTGTGGTGGCACCAACAAAGCCCTATTTTGAATATGGACAATGATGATAATTGATGTTCACTTTTCCCTACTCTTCCATGTTTTCGTTGTCATGTTTGTGCTAGATTCTCGATATTTTTTTTGGTTTGTGAACCTGTGCCCCTCAAGTTAAAAAACATGTGGAAAATAATCATTAATTATTTTTTTTCTTTTAAAGATTACAATGTTTTTTTCAGGGTTTTGAAAGTTTTCAACCATGGCGGACAAGTTCATCCATTTTTTATCATCGGCAAAAACAGACCGAAAGATCGTAGAGAGGAATAGAAGAGAAGAGATGAAGGCCCTTTTCTCCCACCTCTATTCTCTTGTCCCCAACCAAAGCTCAACGTTTCATTTTTTTCTTACTCTCTGTATTTTTATCATGTTTAGATGATGAGAAAATTTGTTTAAATAATTCCGAAAAAAATTTTGAGTTGCTTGTAGGAAGGTGATACGACACTACCTGATCAGCTAGAAAACGCCACAAATTACATAAATCAATTGAAGGAGAACGTGGAGAAATTGAAAGTGAAGAGAGAGAAACTAATGGGATTGGGAGAAAAAAACCTAAGGAGAGGTGAAATTGAAGCAAGATTATTGGTGCAAGTTGATGCTCATCGGTGGGTTCTTCGTTGGAGTTTCTTTTGATTACTGGGTTTGATTATCATTTGGTTTTAAGACAAATCCTCCAGCTGCTTCAAGAAAATGAAACTCAGATAGTCCATATCAATCAGTCAACGGTTACCGATTTGGTCTTTCACAAGATAATAACAGAGGTAAGATAATACATCCAATTATTTACATAAATCAATTGTAATGAATAAGAAAATTGAGAATATTTGTGACGACCGAAAACTAGATGGTGGGAGAAGGAACGACCTTTGAAAGCGCTGAAGGTGAAAGGATTTGCAAGATAGTGAAGAAGTTTGTTTCTCAATACAAAGATGACCCATGCACAGGTTAATGTTTTGTTATCTCCAAGATTTGTGATGCCTTCTGGGTGAGGATTCAAATTTCTAATCTTTTAAATAAGGAA

mRNA sequence

TAACTATTCTTCGAAAAAACCAGAACTTATTAAGGTTCTCAAGTTTCCAACCATGACGGACAACTTCATCCATTATTCAACATCGACCAAAACGGATAGAAAGATCATAGAGATGAAGACCCTTTTCTCCACACTCCATTCTCTTGTCCCCAACCAAAGCTCAACGGAAGGTGAAACGACACTACCGGTTCAGTTAGAAAATGCCACAAATTATATAAGACAATTGAAGGAGAACGTAGAGAAATTGAAAGAGAAGAGAGAGAAGTTAATGGGATCACAAGAAGGTGAAATTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCATTGGAGTTTCTCTTGACTACTGGATCTGATTATCACTTGGTTTTAAGTCAAATCCTTCAGCTGCTTCAAGAAAACGAAACTCAGATCGTCCATATCAATCACTCAACGATCATAGATCGAGTTTTTCACAAGATAGTAGCTCAGATGGTGGGAGAAGGGATGAACTCCGAAGGTGTTGATGGAGAAAGGATCTGTGAGACAGTGAAGAAGTTTGTTTCACAGTACAAAGATGGAGAACGTGGAGAAATTGAAAGTGAAGAGAGAGAAACTAATGGGATTGGGAGAAAAAAACCTAAGGAGAGACAAATCCTCCAGCTGCTTCAAGAAAATGAAACTCAGATAGTCCATATCAATCAGTCAACGGTTACCGATTTGGTCTTTCACAAGATAATAACAGAGATGGTGGGAGAAGGAACGACCTTTGAAAGCGCTGAAGGTGAAAGGATTTGCAAGATAGTGAAGAAGTTTGTTTCTCAATACAAAGATGACCCATGCACAGGTTAATGTTTTGTTATCTCCAAGATTTGTGATGCCTTCTGGGTGAGGATTCAAATTTCTAATCTTTTAAATAAGGAA

Coding sequence (CDS)

ATGACGGACAACTTCATCCATTATTCAACATCGACCAAAACGGATAGAAAGATCATAGAGATGAAGACCCTTTTCTCCACACTCCATTCTCTTGTCCCCAACCAAAGCTCAACGGAAGGTGAAACGACACTACCGGTTCAGTTAGAAAATGCCACAAATTATATAAGACAATTGAAGGAGAACGTAGAGAAATTGAAAGAGAAGAGAGAGAAGTTAATGGGATCACAAGAAGGTGAAATTAAAGCAAGATTATTGGTGCAAGTTGAAGCTCATCAAGTGGGTTCTTCATTGGAGTTTCTCTTGACTACTGGATCTGATTATCACTTGGTTTTAAGTCAAATCCTTCAGCTGCTTCAAGAAAACGAAACTCAGATCGTCCATATCAATCACTCAACGATCATAGATCGAGTTTTTCACAAGATAGTAGCTCAGATGGTGGGAGAAGGGATGAACTCCGAAGGTGTTGATGGAGAAAGGATCTGTGAGACAGTGAAGAAGTTTGTTTCACAGTACAAAGATGGAGAACGTGGAGAAATTGAAAGTGAAGAGAGAGAAACTAATGGGATTGGGAGAAAAAAACCTAAGGAGAGACAAATCCTCCAGCTGCTTCAAGAAAATGAAACTCAGATAGTCCATATCAATCAGTCAACGGTTACCGATTTGGTCTTTCACAAGATAATAACAGAGATGGTGGGAGAAGGAACGACCTTTGAAAGCGCTGAAGGTGAAAGGATTTGCAAGATAGTGAAGAAGTTTGTTTCTCAATACAAAGATGACCCATGCACAGGTTAA

Protein sequence

MTDNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKENVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQENETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKDGERGEIESEERETNGIGRKKPKERQILQLLQENETQIVHINQSTVTDLVFHKIITEMVGEGTTFESAEGERICKIVKKFVSQYKDDPCTG

Homology

[Close]

BLAST of CmoCh18G003510 vs. ExPASy Swiss-Prot
Match: F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-10
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 11  STKTDRKIIE------MKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKENVEK 70
           S   DRK +E      MK+L+S L SL+P+ SSTE   TLP QL+ A NYI++L+ NVEK
Sbjct: 11  SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQVNVEK 70

Query: 71  LKEKR---------EKLMGSQEGEIKA-------RLLVQVEAHQVGSSLEFLLTTGSDYH 130
            +E++         EKL       + +       R L ++E  + GS     L T  ++ 
Sbjct: 71  KRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHK 130

Query: 131 LVLSQILQLL-QENETQIVHINHSTIIDRVFHKI 142
            +  +I+++L +E   +I H  +S + D VFH +
Sbjct: 131 FMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTL 163

[Close]

BLAST of CmoCh18G003510 vs. ExPASy Swiss-Prot
Match: F4I4E1 (Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.9e-07
Identity = 49/160 (30.63%), Postives = 86/160 (53.75%), Query Frame = 0


Query: 15  DRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKENVEKLKEKREKLMG 74
           DR+ + MK LFS L S V    S   +  +P  ++ AT+Y+ QLKENV  LKEK+  L+ 
Sbjct: 25  DRR-MRMKHLFSILSSHV----SPTRKLPVPHLIDQATSYMIQLKENVNYLKEKKRTLLQ 84

Query: 75  SQEGEI--KARLLVQVEAHQVGSSLEF-LLTTGSDYHLVLSQILQLLQENETQIVHINHS 134
            + G +   + LL ++      S++E  L+   +   ++L +++ + +E   Q++  N  
Sbjct: 85  GELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRVMLHELVSIFEEEGAQVMSANLQ 144

Query: 135 TIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQY 172
            + DR  + I+AQ +   ++  G+D  RI E V+K +  Y
Sbjct: 145 NLNDRTTYTIIAQAI---ISRIGIDPSRIEERVRKIIYGY 176

[Close]

BLAST of CmoCh18G003510 vs. ExPASy Swiss-Prot
Match: Q9XIJ1 (Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.6e-05
Identity = 45/157 (28.66%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 19  IEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKENVEKLKEKREKLMGSQEG 78
           + MK LFS L S V    S      +P  ++ A +Y+ QLKE V  L E + +++G   G
Sbjct: 28  MRMKHLFSILSSHV----SPTRRLPVPQLIDQAVSYMIQLKEKVNYLNEMKRRMLG---G 87

Query: 79  EIKAR-----LLVQVEAHQVGSSLEFLLTTGSDYH-LVLSQILQLLQENETQIVHINHST 138
           E+K R     LL ++    + S +E  L    +   ++L +++ + +E   Q++  N   
Sbjct: 88  EVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNMKGVMLHKLVSVFEEEGAQVMSANLQN 147

Query: 139 IIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVS 170
           + DR F+ I+AQ +   +   G+D  RI E ++  +S
Sbjct: 148 LNDRTFYTIIAQAI---ICRIGIDPSRIEERLRDIIS 174

[Close]

BLAST of CmoCh18G003510 vs. ExPASy TrEMBL
Match: A0A6J1JZ96 (transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490190 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 6.5e-79
Identity = 159/175 (90.86%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE 60
           M DNFIHYSTSTKTDRK IEMK LFSTLHSLVPNQ STEGETTLPVQ+ENATNYI+QLKE
Sbjct: 1   MADNFIHYSTSTKTDRKTIEMKALFSTLHSLVPNQISTEGETTLPVQIENATNYIKQLKE 60

Query: 61  NVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE 120
           NVEKLKEKREKL+GS+EGEIKARLLVQVEAHQVGSSLE LLTTGSDY LVL+QILQLLQE
Sbjct: 61  NVEKLKEKREKLIGSREGEIKARLLVQVEAHQVGSSLEVLLTTGSDYLLVLNQILQLLQE 120

Query: 121 NETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKDGE 176
           N TQI+HINHSTII+RVFHKIVAQMVGEGM+SEGVDGERICETVKKFVSQYKDG+
Sbjct: 121 NGTQIIHINHSTIINRVFHKIVAQMVGEGMSSEGVDGERICETVKKFVSQYKDGK 175

[Close]

BLAST of CmoCh18G003510 vs. ExPASy TrEMBL
Match: A0A6J1K2Y3 (transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490185 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 2.2e-66
Identity = 143/179 (79.89%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKII------EMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNY 60
           M +NFIH  +STK DRK+I      EMK LFS LHSLVPNQSSTE ETTL  QLENATNY
Sbjct: 22  MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 81

Query: 61  IRQLKENVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQI 120
           I+QLKENVEKLKEKREKLMGS+EGE KARLLVQVEAHQVGSSLE LLTTGSDY  VL+QI
Sbjct: 82  IKQLKENVEKLKEKREKLMGSREGETKARLLVQVEAHQVGSSLEVLLTTGSDYQFVLNQI 141

Query: 121 LQLLQENETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKD 174
           LQLLQEN TQIV+INHST+ DRVFHKI+A+MVGEG  SE   GERICETVKKFVSQYKD
Sbjct: 142 LQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFVSQYKD 200

[Close]

BLAST of CmoCh18G003510 vs. ExPASy TrEMBL
Match: A0A6J1GT92 (uncharacterized protein LOC111457229 OS=Cucurbita moschata OX=3662 GN=LOC111457229 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 6.5e-63
Identity = 138/184 (75.00%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKII------EMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNY 60
           M +NFIH  +S K DRK+I      EMK LFS LHSLVPNQSS E ETTL  QLENATNY
Sbjct: 22  MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 81

Query: 61  IRQLKENVEKLKEKREKLM-----GSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHL 120
           I+QLKENVEKLKEK+EKLM      ++  EIKARLLVQVEAHQVGSSLEFLLTT SDYHL
Sbjct: 82  IKQLKENVEKLKEKKEKLMKLGEESARSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHL 141

Query: 121 VLSQILQLLQENETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVS 174
           VL Q+LQLLQEN TQIV+INHST+ DRVFHKI+A+MVGEG  SE ++GERICETVKKFVS
Sbjct: 142 VLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGERICETVKKFVS 201

[Close]

BLAST of CmoCh18G003510 vs. ExPASy TrEMBL
Match: A0A6J1K483 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111489936 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 132/186 (70.97%), Postives = 146/186 (78.49%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKII------EMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNY 60
           M DNFI+  +S KTD++II      EMK L S LHSLVPNQ+STEGETTLP QLENATNY
Sbjct: 1   MADNFIYCPSSAKTDQEIIERNRRDEMKALLSQLHSLVPNQNSTEGETTLPDQLENATNY 60

Query: 61  IRQLKENVEKLKEKREKLMGSQE-----GEIKARLLVQVEAHQVGSSLEFLLTTGSDYHL 120
           I+QLKENVEKLKEKREKLMG  E      E KAR++VQVEAH VGSSLE LLTTGSDYHL
Sbjct: 61  IKQLKENVEKLKEKREKLMGLGEKSTITSENKARVIVQVEAHLVGSSLEILLTTGSDYHL 120

Query: 121 VLSQILQLLQENETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVS 176
           VL QI+QLLQEN T+IV IN ST+ +R FHKI+AQM GEG   EG  GERICE VKKFVS
Sbjct: 121 VLRQIIQLLQENGTEIVDINQSTVANRAFHKIIAQMAGEGTTLEGAKGERICERVKKFVS 180

[Close]

BLAST of CmoCh18G003510 vs. ExPASy TrEMBL
Match: A0A6J1GVE3 (transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111457231 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 3.3e-51
Identity = 121/181 (66.85%), Postives = 138/181 (76.24%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKII------EMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNY 60
           M +N IH  + +++D K+I      EMK LFS LHSLVPN+S  EGET L  Q+ENATNY
Sbjct: 1   MANNSIHNPSVSRSDLKLIEKNRGEEMKALFSRLHSLVPNKS--EGETMLSDQIENATNY 60

Query: 61  IRQLKENVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQI 120
           I QLKENVEKLKEK+EKLM   E       +VQVEA  VGSSLEFLLTT  DYH +L QI
Sbjct: 61  INQLKENVEKLKEKKEKLMRLGE----ESTMVQVEARIVGSSLEFLLTTRFDYHSILRQI 120

Query: 121 LQLLQENETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKDG 176
           LQLLQEN T+IVHIN ST+ DR+FHKI+ QMVGEGMNSE  +GERICE VKKFVSQYKDG
Sbjct: 121 LQLLQENGTEIVHINRSTVTDRIFHKIIVQMVGEGMNSERAEGERICEIVKKFVSQYKDG 175

[Close]

BLAST of CmoCh18G003510 vs. NCBI nr
Match: KAG7012436.1 (Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.2 bits (936), Expect = 4.9e-97
Identity = 216/338 (63.91%), Postives = 232/338 (68.64%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE 60
           M DNFIHYSTSTKTDRKI+EMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE
Sbjct: 1   MADNFIHYSTSTKTDRKIVEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE 60

Query: 61  NVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE 120
           NVEKLKEKREKLM S+EGEIKARLL+QVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE
Sbjct: 61  NVEKLKEKREKLMRSREGEIKARLLMQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE 120

Query: 121 NETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQ---------- 180
           N TQIVHINHSTIIDR+FHKIV QMVGEGMNSEGVDGERICETVKKF+ +          
Sbjct: 121 NGTQIVHINHSTIIDRIFHKIVVQMVGEGMNSEGVDGERICETVKKFIDRKLIERNRRAE 180

Query: 181 ----------------YKDGERGEIESEERETNGIGR--------KKPKE---------- 240
                             + E   ++  E  TN I +        K+ KE          
Sbjct: 181 MKALFSRLHSLVPNQSSTEAETTLLDQLENATNYIKQLKENVEKLKEKKEKLMKLGEESA 240

Query: 241 ------------------------------------RQILQLLQENETQIVHINQSTVTD 259
                                               +Q+LQLL+EN TQIV+IN STV D
Sbjct: 241 RSSEIKARLLVQVEAHQVGSSLEFLLTTRSDYHLVLKQVLQLLEENGTQIVYINHSTVKD 300

[Close]

BLAST of CmoCh18G003510 vs. NCBI nr
Match: KAG6573270.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-83
Identity = 166/175 (94.86%), Postives = 172/175 (98.29%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE 60
           M DNFIHYSTSTKTDRKI+EMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE
Sbjct: 1   MADNFIHYSTSTKTDRKIVEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE 60

Query: 61  NVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE 120
           NVEKLKEKREKLMGS+EGEIKARLL+QVEAHQVGSSLEFLLTTGS+YHLVLSQILQLLQE
Sbjct: 61  NVEKLKEKREKLMGSREGEIKARLLMQVEAHQVGSSLEFLLTTGSNYHLVLSQILQLLQE 120

Query: 121 NETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKDGE 176
           N TQIVHINHSTIIDR+FHKIV QMVGEGMNSEGVDGERICETVKKFVSQYKDG+
Sbjct: 121 NGTQIVHINHSTIIDRIFHKIVVQMVGEGMNSEGVDGERICETVKKFVSQYKDGK 175

[Close]

BLAST of CmoCh18G003510 vs. NCBI nr
Match: XP_023542786.1 (transcription factor bHLH167-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.6 bits (810), Expect = 2.0e-82
Identity = 166/175 (94.86%), Postives = 171/175 (97.71%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE 60
           M DNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSS EGE TLPVQLENATNYI+QLKE
Sbjct: 1   MADNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSSAEGEMTLPVQLENATNYIKQLKE 60

Query: 61  NVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE 120
           NVEKLKEKREKLMGS+EGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE
Sbjct: 61  NVEKLKEKREKLMGSREGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE 120

Query: 121 NETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKDGE 176
           N TQIVHINHSTIIDRVFHKIVAQMVGEGM+SEGVDGERICETVKKFVSQYK+G+
Sbjct: 121 NGTQIVHINHSTIIDRVFHKIVAQMVGEGMSSEGVDGERICETVKKFVSQYKNGK 175

[Close]

BLAST of CmoCh18G003510 vs. NCBI nr
Match: XP_022994481.1 (transcription factor bHLH167-like [Cucurbita maxima])

HSP 1 Score: 303.9 bits (777), Expect = 1.3e-78
Identity = 159/175 (90.86%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKE 60
           M DNFIHYSTSTKTDRK IEMK LFSTLHSLVPNQ STEGETTLPVQ+ENATNYI+QLKE
Sbjct: 1   MADNFIHYSTSTKTDRKTIEMKALFSTLHSLVPNQISTEGETTLPVQIENATNYIKQLKE 60

Query: 61  NVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQILQLLQE 120
           NVEKLKEKREKL+GS+EGEIKARLLVQVEAHQVGSSLE LLTTGSDY LVL+QILQLLQE
Sbjct: 61  NVEKLKEKREKLIGSREGEIKARLLVQVEAHQVGSSLEVLLTTGSDYLLVLNQILQLLQE 120

Query: 121 NETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKDGE 176
           N TQI+HINHSTII+RVFHKIVAQMVGEGM+SEGVDGERICETVKKFVSQYKDG+
Sbjct: 121 NGTQIIHINHSTIINRVFHKIVAQMVGEGMSSEGVDGERICETVKKFVSQYKDGK 175

[Close]

BLAST of CmoCh18G003510 vs. NCBI nr
Match: XP_022994474.1 (transcription factor bHLH167-like [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 4.5e-66
Identity = 143/179 (79.89%), Postives = 153/179 (85.47%), Query Frame = 0


Query: 1   MTDNFIHYSTSTKTDRKII------EMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNY 60
           M +NFIH  +STK DRK+I      EMK LFS LHSLVPNQSSTE ETTL  QLENATNY
Sbjct: 22  MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 81

Query: 61  IRQLKENVEKLKEKREKLMGSQEGEIKARLLVQVEAHQVGSSLEFLLTTGSDYHLVLSQI 120
           I+QLKENVEKLKEKREKLMGS+EGE KARLLVQVEAHQVGSSLE LLTTGSDY  VL+QI
Sbjct: 82  IKQLKENVEKLKEKREKLMGSREGETKARLLVQVEAHQVGSSLEVLLTTGSDYQFVLNQI 141

Query: 121 LQLLQENETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQYKD 174
           LQLLQEN TQIV+INHST+ DRVFHKI+A+MVGEG  SE   GERICETVKKFVSQYKD
Sbjct: 142 LQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGERICETVKKFVSQYKD 200

[Close]

BLAST of CmoCh18G003510 vs. TAIR 10
Match: AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-11
Identity = 52/154 (33.77%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 11  STKTDRKIIE------MKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKENVEK 70
           S   DRK +E      MK+L+S L SL+P+ SSTE   TLP QL+ A NYI++L+ NVEK
Sbjct: 11  SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTE-PLTLPDQLDEAANYIKKLQVNVEK 70

Query: 71  LKEKR---------EKLMGSQEGEIKA-------RLLVQVEAHQVGSSLEFLLTTGSDYH 130
            +E++         EKL       + +       R L ++E  + GS     L T  ++ 
Sbjct: 71  KRERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHK 130

Query: 131 LVLSQILQLL-QENETQIVHINHSTIIDRVFHKI 142
            +  +I+++L +E   +I H  +S + D VFH +
Sbjct: 131 FMFCEIIRVLTEELGAEITHAGYSIVDDAVFHTL 163

[Close]

BLAST of CmoCh18G003510 vs. TAIR 10
Match: AT1G10585.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-08
Identity = 49/160 (30.63%), Postives = 86/160 (53.75%), Query Frame = 0


Query: 15  DRKIIEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKENVEKLKEKREKLMG 74
           DR+ + MK LFS L S V    S   +  +P  ++ AT+Y+ QLKENV  LKEK+  L+ 
Sbjct: 25  DRR-MRMKHLFSILSSHV----SPTRKLPVPHLIDQATSYMIQLKENVNYLKEKKRTLLQ 84

Query: 75  SQEGEI--KARLLVQVEAHQVGSSLEF-LLTTGSDYHLVLSQILQLLQENETQIVHINHS 134
            + G +   + LL ++      S++E  L+   +   ++L +++ + +E   Q++  N  
Sbjct: 85  GELGNLYEGSFLLPKLSIRSRDSTIEMNLIMDLNMKRVMLHELVSIFEEEGAQVMSANLQ 144

Query: 135 TIIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVSQY 172
            + DR  + I+AQ +   ++  G+D  RI E V+K +  Y
Sbjct: 145 NLNDRTTYTIIAQAI---ISRIGIDPSRIEERVRKIIYGY 176

[Close]

BLAST of CmoCh18G003510 vs. TAIR 10
Match: AT1G10586.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06
Identity = 45/157 (28.66%), Postives = 79/157 (50.32%), Query Frame = 0


Query: 19  IEMKTLFSTLHSLVPNQSSTEGETTLPVQLENATNYIRQLKENVEKLKEKREKLMGSQEG 78
           + MK LFS L S V    S      +P  ++ A +Y+ QLKE V  L E + +++G   G
Sbjct: 28  MRMKHLFSILSSHV----SPTRRLPVPQLIDQAVSYMIQLKEKVNYLNEMKRRMLG---G 87

Query: 79  EIKAR-----LLVQVEAHQVGSSLEFLLTTGSDYH-LVLSQILQLLQENETQIVHINHST 138
           E+K R     LL ++    + S +E  L    +   ++L +++ + +E   Q++  N   
Sbjct: 88  EVKNRSEGSSLLPKLSIRSLDSIIEMNLVMDLNMKGVMLHKLVSVFEEEGAQVMSANLQN 147

Query: 139 IIDRVFHKIVAQMVGEGMNSEGVDGERICETVKKFVS 170
           + DR F+ I+AQ +   +   G+D  RI E ++  +S
Sbjct: 148 LNDRTFYTIIAQAI---ICRIGIDPSRIEERLRDIIS 174

[Close]

BLAST of CmoCh18G003510 vs. TAIR 10
Match: AT1G10586.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 3.6e-05
Identity = 36/132 (27.27%), Postives = 69/132 (52.27%), Query Frame = 0


Query: 44  LPVQLENATNYIRQLKENVEKLKEKREKLMGSQEGEIKAR-----LLVQVEAHQVGSSLE 103
           +P  ++ A +Y+ QLKE V  L E + +++G   GE+K R     LL ++    + S +E
Sbjct: 8   VPQLIDQAVSYMIQLKEKVNYLNEMKRRMLG---GEVKNRSEGSSLLPKLSIRSLDSIIE 67

Query: 104 FLLTTGSDYH-LVLSQILQLLQENETQIVHINHSTIIDRVFHKIVAQMVGEGMNSEGVDG 163
             L    +   ++L +++ + +E   Q++  N   + DR F+ I+AQ +   +   G+D 
Sbjct: 68  MNLVMDLNMKGVMLHKLVSVFEEEGAQVMSANLQNLNDRTFYTIIAQAI---ICRIGIDP 127

Query: 164 ERICETVKKFVS 170
            RI E ++  +S
Sbjct: 128 SRIEERLRDIIS 133

The following BLAST results are available for this feature:

BLAST of CmoCh18G003510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JIJ7	3.6e-10	33.77	Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=...	[more]
F4I4E1	4.9e-07	30.63	Transcription factor bHLH167 OS=Arabidopsis thaliana OX=3702 GN=BHLH167 PE=2 SV=...	[more]
Q9XIJ1	4.6e-05	28.66	Transcription factor bHLH168 OS=Arabidopsis thaliana OX=3702 GN=BHLH168 PE=3 SV=...	[more]

BLAST of CmoCh18G003510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JZ96	6.5e-79	90.86	transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490190 PE...	[more]
A0A6J1K2Y3	2.2e-66	79.89	transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490185 PE...	[more]
A0A6J1GT92	6.5e-63	75.00	uncharacterized protein LOC111457229 OS=Cucurbita moschata OX=3662 GN=LOC1114572...	[more]
A0A6J1K483	1.7e-58	70.97	transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111489936 PE...	[more]
A0A6J1GVE3	3.3e-51	66.85	transcription factor bHLH162-like OS=Cucurbita moschata OX=3662 GN=LOC111457231 ...	[more]

BLAST of CmoCh18G003510 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012436.1	4.9e-97	63.91	Transcription factor bHLH [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6573270.1	1.4e-83	94.86	Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma...	[more]
XP_023542786.1	2.0e-82	94.86	transcription factor bHLH167-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994481.1	1.3e-78	90.86	transcription factor bHLH167-like [Cucurbita maxima]	[more]
XP_022994474.1	4.5e-66	79.89	transcription factor bHLH167-like [Cucurbita maxima]	[more]

BLAST of CmoCh18G003510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20970.1	2.6e-11	33.77	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10585.1	3.5e-08	30.63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.1	3.2e-06	28.66	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G10586.2	3.6e-05	27.27	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..75
None	No IPR available	PANTHER	PTHR13935:SF90	TRANSCRIPTION FACTOR BHLH162	coord: 9..169
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 15..84 e-value: 3.1E-7 score: 32.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 19..75
IPR015660	Achaete-scute transcription factor-related	PANTHER	PTHR13935	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	coord: 9..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G003510.1	CmoCh18G003510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000112	regulation of cellular macromolecule biosynthetic process
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0090575	RNA polymerase II transcription regulator complex
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity