CmoCh18G003060 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAATCACTGCAGGCTCATTCATGCTAGTGGCAACGCTAATTGTAACCGTGGTTTTCACAGCAGCGTTCACAGTTCCAGGAGGCAACGATGATAAGGAAGGAATTCCTATATTTCTAGAGAATTATGCGTTTACAATATTTGTAATATCAGATGTTGTGGCTGTTGTATTTTCCACAATTTCTATATTCATCTTTGTATCAATCTTGACGTCGCGCAATGAAGTTAATGCGTGGGCTGCTGGCGCTATTGGTTTCTATTGCATGCATGGTGTAATGGCTTTCAGCTCAGCCTTCATTATTGCGTATTATAAAATAAGGGGGAAGGCAACATTGGCCACTGCAGCAGCAGGGGTGCTTCCAATAGAGTGTTTTTTTATGTGTCACTATAAACTTGTAGTGGAATTTTGGTCAACTTCTTGGTCCATAA ATGAAAATCACTGCAGGCTCATTCATGCTAGTGGCAACGCTAATTGTAACCGTGGTTTTCACAGCAGCGTTCACAGTTCCAGGAGGCAACGATGATAAGGAAGGAATTCCTATATTTCTAGAGAATTATGCGTTTACAATATTTGTAATATCAGATGTTGTGGCTGTTGTATTTTCCACAATTTCTATATTCATCTTTGTATCAATCTTGACGTCGCGCAATGAAGTTAATGCGTGGGCTGCTGGCGCTATTGGTTTCTATTGCATGCATGGTGTAATGGCTTTCAGCTCAGCCTTCATTATTGCGTATTATAAAATAAGGGGGAAGGCAACATTGGCCACTGCAGCAGCAGGGTGGAATTTTGGTCAACTTCTTGGTCCATAA ATGAAAATCACTGCAGGCTCATTCATGCTAGTGGCAACGCTAATTGTAACCGTGGTTTTCACAGCAGCGTTCACAGTTCCAGGAGGCAACGATGATAAGGAAGGAATTCCTATATTTCTAGAGAATTATGCGTTTACAATATTTGTAATATCAGATGTTGTGGCTGTTGTATTTTCCACAATTTCTATATTCATCTTTGTATCAATCTTGACGTCGCGCAATGAAGTTAATGCGTGGGCTGCTGGCGCTATTGGTTTCTATTGCATGCATGGTGTAATGGCTTTCAGCTCAGCCTTCATTATTGCGTATTATAAAATAAGGGGGAAGGCAACATTGGCCACTGCAGCAGCAGGGTGGAATTTTGGTCAACTTCTTGGTCCATAA MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFSTISIFIFVSILTSRNEVNAWAAGAIGFYCMHGVMAFSSAFIIAYYKIRGKATLATAAAGWNFGQLLGP Homology
BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1JYW0 (ankyrin repeat-containing protein At5g02620-like OS=Cucurbita maxima OX=3661 GN=LOC111490095 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21 Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0
BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1GTF5 (ankyrin repeat-containing protein ITN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456952 PE=4 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21 Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0
BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1C944 (ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LOC111008583 PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 7.3e-20 Identity = 69/130 (53.08%), Postives = 82/130 (63.08%), Query Frame = 0
BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1GRE6 (ankyrin repeat-containing protein At5g02620-like OS=Cucurbita moschata OX=3662 GN=LOC111456837 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 3.6e-19 Identity = 69/129 (53.49%), Postives = 78/129 (60.47%), Query Frame = 0
BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A5A7UP28 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002410 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18 Identity = 68/127 (53.54%), Postives = 79/127 (62.20%), Query Frame = 0
BLAST of CmoCh18G003060 vs. NCBI nr
Match: KAG6573174.1 (Ankyrin repeat-containing protein ITN1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 112.1 bits (279), Expect = 3.6e-21 Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0
BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_022954800.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita moschata]) HSP 1 Score: 112.1 bits (279), Expect = 3.6e-21 Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0
BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_022994346.1 (ankyrin repeat-containing protein At5g02620-like [Cucurbita maxima]) HSP 1 Score: 112.1 bits (279), Expect = 3.6e-21 Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0
BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_023542596.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20 Identity = 72/128 (56.25%), Postives = 81/128 (63.28%), Query Frame = 0
BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_038894043.1 (ankyrin repeat-containing protein At5g02620-like [Benincasa hispida]) HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19 Identity = 70/128 (54.69%), Postives = 80/128 (62.50%), Query Frame = 0
BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G35810.1 (Ankyrin repeat family protein ) HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12 Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 0
BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT3G54070.1 (Ankyrin repeat family protein ) HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11 Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 0
BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G04700.1 (Ankyrin repeat family protein ) HSP 1 Score: 64.3 bits (155), Expect = 8.0e-11 Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 0
BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G04730.1 (Ankyrin-repeat containing protein ) HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10 Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 0
BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G04690.1 (Ankyrin repeat family protein ) HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09 Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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