CmoCh18G003060 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh18G003060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionAnkyrin repeat-containing protein
LocationCmo_Chr18: 1968784 .. 1969213 (+)
RNA-Seq ExpressionCmoCh18G003060
SyntenyCmoCh18G003060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATCACTGCAGGCTCATTCATGCTAGTGGCAACGCTAATTGTAACCGTGGTTTTCACAGCAGCGTTCACAGTTCCAGGAGGCAACGATGATAAGGAAGGAATTCCTATATTTCTAGAGAATTATGCGTTTACAATATTTGTAATATCAGATGTTGTGGCTGTTGTATTTTCCACAATTTCTATATTCATCTTTGTATCAATCTTGACGTCGCGCAATGAAGTTAATGCGTGGGCTGCTGGCGCTATTGGTTTCTATTGCATGCATGGTGTAATGGCTTTCAGCTCAGCCTTCATTATTGCGTATTATAAAATAAGGGGGAAGGCAACATTGGCCACTGCAGCAGCAGGGGTGCTTCCAATAGAGTGTTTTTTTATGTGTCACTATAAACTTGTAGTGGAATTTTGGTCAACTTCTTGGTCCATAA

mRNA sequence

ATGAAAATCACTGCAGGCTCATTCATGCTAGTGGCAACGCTAATTGTAACCGTGGTTTTCACAGCAGCGTTCACAGTTCCAGGAGGCAACGATGATAAGGAAGGAATTCCTATATTTCTAGAGAATTATGCGTTTACAATATTTGTAATATCAGATGTTGTGGCTGTTGTATTTTCCACAATTTCTATATTCATCTTTGTATCAATCTTGACGTCGCGCAATGAAGTTAATGCGTGGGCTGCTGGCGCTATTGGTTTCTATTGCATGCATGGTGTAATGGCTTTCAGCTCAGCCTTCATTATTGCGTATTATAAAATAAGGGGGAAGGCAACATTGGCCACTGCAGCAGCAGGGTGGAATTTTGGTCAACTTCTTGGTCCATAA

Coding sequence (CDS)

ATGAAAATCACTGCAGGCTCATTCATGCTAGTGGCAACGCTAATTGTAACCGTGGTTTTCACAGCAGCGTTCACAGTTCCAGGAGGCAACGATGATAAGGAAGGAATTCCTATATTTCTAGAGAATTATGCGTTTACAATATTTGTAATATCAGATGTTGTGGCTGTTGTATTTTCCACAATTTCTATATTCATCTTTGTATCAATCTTGACGTCGCGCAATGAAGTTAATGCGTGGGCTGCTGGCGCTATTGGTTTCTATTGCATGCATGGTGTAATGGCTTTCAGCTCAGCCTTCATTATTGCGTATTATAAAATAAGGGGGAAGGCAACATTGGCCACTGCAGCAGCAGGGTGGAATTTTGGTCAACTTCTTGGTCCATAA

Protein sequence

MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFSTISIFIFVSILTSRNEVNAWAAGAIGFYCMHGVMAFSSAFIIAYYKIRGKATLATAAAGWNFGQLLGP
Homology
BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1JYW0 (ankyrin repeat-containing protein At5g02620-like OS=Cucurbita maxima OX=3661 GN=LOC111490095 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGNDDKEGIPIF +N AFT+FVISDV A+V ST
Sbjct: 538 MKNTANSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFRQNQAFTVFVISDVAALVLST 597

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 117
            SI  F+SILTSR     +                +   CM  V+AFS+AF IAY K + 
Sbjct: 598 TSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACM--VVAFSAAFFIAYDKTKA 657

BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1GTF5 (ankyrin repeat-containing protein ITN1-like OS=Cucurbita moschata OX=3662 GN=LOC111456952 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGNDDKEGIPIF +N AFT+FVISDV A+V ST
Sbjct: 538 MKNTANSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFRQNQAFTVFVISDVAALVLST 597

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 117
            SI  F+SILTSR     +                +   CM  V+AFS+AF IAY K + 
Sbjct: 598 TSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACM--VVAFSAAFFIAYDKTKA 657

BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1C944 (ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LOC111008583 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 7.3e-20
Identity = 69/130 (53.08%), Postives = 82/130 (63.08%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGND+  GIPIF EN AFT+FV+SDV A++ ST
Sbjct: 599 MKNTANSCMLVATLIATVVFAAAFTVPGGNDNTGGIPIFRENQAFTVFVVSDVTALILST 658

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 119
            SI  F+SILTSR   + +                +   CM  V+AFS+ F IAY K + 
Sbjct: 659 TSILTFLSILTSRYAEDDFMVSLPTKLLVGLLTLFVSIACM--VVAFSATFFIAYDKTKA 718

BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A6J1GRE6 (ankyrin repeat-containing protein At5g02620-like OS=Cucurbita moschata OX=3662 GN=LOC111456837 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.6e-19
Identity = 69/129 (53.49%), Postives = 78/129 (60.47%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK T  S MLVATLI TVVF AAFTVPGGNDDKEGIPIF +N  FT+FVISDV A+V ST
Sbjct: 475 MKTTENSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFWQNKVFTVFVISDVAALVLST 534

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 118
            SI  F+SILTSR     +                +   CM  V+AF +AF IAY K + 
Sbjct: 535 TSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACM--VVAFGAAFFIAYDKTKT 594

BLAST of CmoCh18G003060 vs. ExPASy TrEMBL
Match: A0A5A7UP28 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002410 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 68/127 (53.54%), Postives = 79/127 (62.20%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGNDDK G P F +N AFT+FVI+DV A+VFST
Sbjct: 535 MKNTANSCMLVATLIATVVFAAAFTVPGGNDDKSGTPNFRQNQAFTVFVITDVAALVFST 594

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 116
            SI  F+SILTSR   + +                +   CM  V+AFS+ F IAY K + 
Sbjct: 595 TSILTFLSILTSRYAEDDFLMSLPIKLLFGLVTLFLSISCM--VVAFSATFFIAYDKTKQ 654

BLAST of CmoCh18G003060 vs. NCBI nr
Match: KAG6573174.1 (Ankyrin repeat-containing protein ITN1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-21
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGNDDKEGIPIF +N AFT+FVISDV A+V ST
Sbjct: 542 MKNTANSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFRQNQAFTVFVISDVAALVLST 601

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 117
            SI  F+SILTSR     +                +   CM  V+AFS+AF IAY K + 
Sbjct: 602 TSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACM--VVAFSAAFFIAYDKTKA 661

BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_022954800.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-21
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGNDDKEGIPIF +N AFT+FVISDV A+V ST
Sbjct: 538 MKNTANSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFRQNQAFTVFVISDVAALVLST 597

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 117
            SI  F+SILTSR     +                +   CM  V+AFS+AF IAY K + 
Sbjct: 598 TSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACM--VVAFSAAFFIAYDKTKA 657

BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_022994346.1 (ankyrin repeat-containing protein At5g02620-like [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 3.6e-21
Identity = 73/128 (57.03%), Postives = 82/128 (64.06%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGNDDKEGIPIF +N AFT+FVISDV A+V ST
Sbjct: 538 MKNTANSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFRQNQAFTVFVISDVAALVLST 597

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 117
            SI  F+SILTSR     +                +   CM  V+AFS+AF IAY K + 
Sbjct: 598 TSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACM--VVAFSAAFFIAYDKTKA 657

BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_023542596.1 (ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 72/128 (56.25%), Postives = 81/128 (63.28%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGNDDKEGIPIF +N AFT+FVISDV A+V ST
Sbjct: 542 MKNTANSCMLVATLIATVVFAAAFTVPGGNDDKEGIPIFRQNQAFTVFVISDVAALVLST 601

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 117
            SI  F+SILTSR     +                +   CM  V+AFS+AF IAY K + 
Sbjct: 602 TSILTFLSILTSRYAEEDFLVSLPSKLLFGLLTLFVSIACM--VVAFSAAFFIAYDKTKA 661

BLAST of CmoCh18G003060 vs. NCBI nr
Match: XP_038894043.1 (ankyrin repeat-containing protein At5g02620-like [Benincasa hispida])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 70/128 (54.69%), Postives = 80/128 (62.50%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA S MLVATLI TVVF AAFTVPGGN+DKEG PIF +N AFT+FVISDV A+V ST
Sbjct: 476 MKHTANSCMLVATLITTVVFAAAFTVPGGNNDKEGTPIFQQNKAFTVFVISDVAALVLST 535

Query: 61  ISIFIFVSILTSRNEVNAWAAGA------------IGFYCMHGVMAFSSAFIIAYYKIRG 117
            SI  F+SILTSR   + +                +   CM   MAFS+ F IAY K + 
Sbjct: 536 TSILTFLSILTSRYAEDDFLISLPRKLLFGLLTLFVSIVCM--AMAFSTTFFIAYDKTKA 595

BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G35810.1 (Ankyrin repeat family protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-12
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKE-----GIPIFLENYAFTIFVISDVVA 60
           MK TA + +LV+TLI TVVF AAFT+PGGND        G P F + + F +F+ISD VA
Sbjct: 177 MKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVA 236

Query: 61  VVFSTISIFIFVSILTSR 74
           ++ S  SI IF+SILTSR
Sbjct: 237 LLSSVTSIMIFLSILTSR 254

BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT3G54070.1 (Ankyrin repeat family protein )

HSP 1 Score: 65.5 bits (158), Expect = 3.6e-11
Identity = 43/79 (54.43%), Postives = 50/79 (63.29%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKE------GIPIFLENYAFTIFVISDVV 60
           MK TA + ML ATLI TVVF AA T+PGGNDD        G P F +   F IF +SD V
Sbjct: 401 MKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLGFPNFRKRLLFDIFTLSDSV 460

Query: 61  AVVFSTISIFIFVSILTSR 74
           A+  S +SI IF+SI TSR
Sbjct: 461 ALFSSMMSIVIFLSIFTSR 479

BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G04700.1 (Ankyrin repeat family protein )

HSP 1 Score: 64.3 bits (155), Expect = 8.0e-11
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDD-KEGIPIFLENYAFTIFVISDVVAVVFS 60
           MK TA S  LVA LIVTV F A FTVPGG DD  +G P  L +  F IF++SD+++   S
Sbjct: 505 MKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFAS 564

Query: 61  TISIFIFVSILTSR 74
             S+ IF+ ILT+R
Sbjct: 565 CTSVLIFLGILTAR 578

BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G04730.1 (Ankyrin-repeat containing protein )

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKEGIPIFLENYAFTIFVISDVVAVVFST 60
           MK TA +   VA LI TV F A FTVPGG D   G P+ L +  F  F+ +D +A   S 
Sbjct: 440 MKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASC 499

Query: 61  ISIFIFVSILTSR 74
           IS+ IF+SILTSR
Sbjct: 500 ISVLIFLSILTSR 512

BLAST of CmoCh18G003060 vs. TAIR 10
Match: AT5G04690.1 (Ankyrin repeat family protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-09
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0

Query: 1   MKITAGSFMLVATLIVTVVFTAAFTVPGGNDDKE-GIPIFLENYAFTIFVISDVVAVVFS 60
           MK TA S  LVA LIVTV F A FTVPGG DD   G P       F IF++SD+++   +
Sbjct: 463 MKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAA 522

Query: 61  TISIFIFVSILTSR 74
             S+ IF+ ILT+R
Sbjct: 523 CTSVLIFLGILTAR 536

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JYW01.7e-2157.03ankyrin repeat-containing protein At5g02620-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1GTF51.7e-2157.03ankyrin repeat-containing protein ITN1-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1C9447.3e-2053.08ankyrin repeat-containing protein ITN1-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1GRE63.6e-1953.49ankyrin repeat-containing protein At5g02620-like OS=Cucurbita moschata OX=3662 G... [more]
A0A5A7UP281.4e-1853.54Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
Match NameE-valueIdentityDescription
KAG6573174.13.6e-2157.03Ankyrin repeat-containing protein ITN1, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022954800.13.6e-2157.03ankyrin repeat-containing protein ITN1-like [Cucurbita moschata][more]
XP_022994346.13.6e-2157.03ankyrin repeat-containing protein At5g02620-like [Cucurbita maxima][more]
XP_023542596.11.0e-2056.25ankyrin repeat-containing protein ITN1-like [Cucurbita pepo subsp. pepo][more]
XP_038894043.11.5e-1954.69ankyrin repeat-containing protein At5g02620-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT5G35810.11.5e-1255.13Ankyrin repeat family protein [more]
AT3G54070.13.6e-1154.43Ankyrin repeat family protein [more]
AT5G04700.18.0e-1152.70Ankyrin repeat family protein [more]
AT5G04730.13.0e-1050.68Ankyrin-repeat containing protein [more]
AT5G04690.11.5e-0950.00Ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026961PGG domainPFAMPF13962PGGcoord: 3..104
e-value: 1.6E-20
score: 73.0
NoneNo IPR availablePANTHERPTHR24177CASKINcoord: 2..76
NoneNo IPR availablePANTHERPTHR24177:SF305SUBFAMILY NOT NAMEDcoord: 2..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G003060.1CmoCh18G003060.1mRNA