CmoCh18G002950 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G002950
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Cmo_Chr18: 1921800 .. 1922477 (+)
RNA-Seq Expression	CmoCh18G002950
Synteny	CmoCh18G002950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGCCCCAGCCAATTGCCAGTGCACCACACCAACACGCCCGAACACCGCCCAATCAAGCGCCACCACACAGCGCGCTACTACGTTCACCGTGTCAAGGAGAGCCTCACCACCCGCTTGTCCAAGCTCATATGCGCCATCTTCTTAAGCTTGTTGCTGATTGTGGGCATCATTACGTTTATTCTCTGGCTCAGTTTACGACCCCACCGGCCCAGGTTTTTTATCCACGACTTTTCGGTTCCCGGTTTGGGTTTGGAGACCGGGTTCGAGAATGCCCAGATTGCGTTCAATGTCACGGCTCGAAATTCGAATTTGAATATTGGGATCTACTACGGTTCGATTACCGGTTCGGTTTATTATAGAGACCAGAAAATTGGGTCGACGCCGTTGCTGGATTCGTATTATGAGGCGCCGAAGACTACTAAGGTGTTGGCGGCGGTGCTGAGCGGCGCGACGTTGAATATCAATAATGAACGGTGGATGGAGTTTAATAATGACCGGTCTAAAGGGACCGTGGCTTTCCGGTTGGAGATTACGTCCACTATCCGGTTTAGGATATCCACGTGGGATAGTAAGCGCCACGGTATGCATGCTAATTGTGACGTGTCGGTGGGCCCCGATGGGATGATTTTGCCTTCTTCCAGGGATGTGAGATGCCCGGTTTATTTTACCTGA

mRNA sequence

ATGCATAGCCCCAGCCAATTGCCAGTGCACCACACCAACACGCCCGAACACCGCCCAATCAAGCGCCACCACACAGCGCGCTACTACGTTCACCGTGTCAAGGAGAGCCTCACCACCCGCTTGTCCAAGCTCATATGCGCCATCTTCTTAAGCTTGTTGCTGATTGTGGGCATCATTACGTTTATTCTCTGGCTCAGTTTACGACCCCACCGGCCCAGGTTTTTTATCCACGACTTTTCGGTTCCCGGTTTGGGTTTGGAGACCGGGTTCGAGAATGCCCAGATTGCGTTCAATGTCACGGCTCGAAATTCGAATTTGAATATTGGGATCTACTACGGTTCGATTACCGGTTCGGTTTATTATAGAGACCAGAAAATTGGGTCGACGCCGTTGCTGGATTCGTATTATGAGGCGCCGAAGACTACTAAGGTGTTGGCGGCGGTGCTGAGCGGCGCGACGTTGAATATCAATAATGAACGGTGGATGGAGTTTAATAATGACCGGTCTAAAGGGACCGTGGCTTTCCGGTTGGAGATTACGTCCACTATCCGGTTTAGGATATCCACGTGGGATAGTAAGCGCCACGGTATGCATGCTAATTGTGACGTGTCGGTGGGCCCCGATGGGATGATTTTGCCTTCTTCCAGGGATGTGAGATGCCCGGTTTATTTTACCTGA

Coding sequence (CDS)

ATGCATAGCCCCAGCCAATTGCCAGTGCACCACACCAACACGCCCGAACACCGCCCAATCAAGCGCCACCACACAGCGCGCTACTACGTTCACCGTGTCAAGGAGAGCCTCACCACCCGCTTGTCCAAGCTCATATGCGCCATCTTCTTAAGCTTGTTGCTGATTGTGGGCATCATTACGTTTATTCTCTGGCTCAGTTTACGACCCCACCGGCCCAGGTTTTTTATCCACGACTTTTCGGTTCCCGGTTTGGGTTTGGAGACCGGGTTCGAGAATGCCCAGATTGCGTTCAATGTCACGGCTCGAAATTCGAATTTGAATATTGGGATCTACTACGGTTCGATTACCGGTTCGGTTTATTATAGAGACCAGAAAATTGGGTCGACGCCGTTGCTGGATTCGTATTATGAGGCGCCGAAGACTACTAAGGTGTTGGCGGCGGTGCTGAGCGGCGCGACGTTGAATATCAATAATGAACGGTGGATGGAGTTTAATAATGACCGGTCTAAAGGGACCGTGGCTTTCCGGTTGGAGATTACGTCCACTATCCGGTTTAGGATATCCACGTGGGATAGTAAGCGCCACGGTATGCATGCTAATTGTGACGTGTCGGTGGGCCCCGATGGGATGATTTTGCCTTCTTCCAGGGATGTGAGATGCCCGGTTTATTTTACCTGA

Protein sequence

MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT

Homology

[Close]

BLAST of CmoCh18G002950 vs. ExPASy Swiss-Prot
Match: Q9ZVD2 (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.3e-15
Identity = 56/173 (32.37%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 45  ICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVT--AR 104
           + A+F+ L+++ GI   +L+L  RP  P++ I  FSV G+ L +       +FNVT  +R
Sbjct: 79  LAAVFI-LIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNS-TSPISPSFNVTVRSR 138

Query: 105 NSNLNIGIYYGSITG-SVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERW 164
           N N  IG+YY   +   VYY D  I S  ++  +Y+  K   V+  VLSG+ + + +   
Sbjct: 139 NGNGKIGVYYEKESSVDVYYNDVDI-SNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMR 198

Query: 165 MEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPS 215
            E  N+ SK TV F+L+I + ++ +  +  +    ++ +CDV+V  D +  PS
Sbjct: 199 KEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTV--DKLTAPS 246

[Close]

BLAST of CmoCh18G002950 vs. ExPASy Swiss-Prot
Match: Q9FI03 (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-14
Identity = 45/156 (28.85%), Postives = 77/156 (49.36%), Query Frame = 0


Query: 49  FLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETG---FENAQIAFNVTARNSN 108
           F  LLLI+    F++WL L P RP F + +  +  L L T      N+ +   + ++N N
Sbjct: 35  FSGLLLII----FLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPN 94

Query: 109 LNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFN 168
             +GIYY  +     YR Q+I S   L  +Y++ +   +L A L G  L +      + +
Sbjct: 95  KKVGIYYDKLLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQIS 154

Query: 169 NDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANC 202
            +RS G +   +++   +R++I TW S  +  + NC
Sbjct: 155 RERSTGKIIIGMKMDGKLRWKIGTWVSGAYRFNVNC 186

[Close]

BLAST of CmoCh18G002950 vs. ExPASy Swiss-Prot
Match: O48915 (Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-12
Identity = 53/170 (31.18%), Postives = 80/170 (47.06%), Query Frame = 0


Query: 46  CAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLE-TGFENAQIAFNVTARNS 105
           C   LS +   G+ +  LWLSLR  +P+  I +F +P LG +    +N  + F V   N 
Sbjct: 15  CTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNFMVRCDNP 74

Query: 106 NLNIGIYYGSI-TGSVYYRDQKIGSTPL-LDSYYEAPKTTK--VLAAVLSGATLNINNER 165
           N + GIYY  +          KI S+ L L   Y  PK  +     A   G    +NN+ 
Sbjct: 75  NKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKPLNNQT 134

Query: 166 WMEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGM 211
            +        G+  FRL++ + +RF+I  W +KR+G+    DV V  DG+
Sbjct: 135 VL--RAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDGV 182

[Close]

BLAST of CmoCh18G002950 vs. ExPASy Swiss-Prot
Match: Q9SRN1 (NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.3e-12
Identity = 43/155 (27.74%), Postives = 77/155 (49.68%), Query Frame = 0


Query: 44  LICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFE-NAQIAFNVTAR 103
           LIC I +++ +I+G+   ILWL  RP+  +F++ D ++     +     +  +  N T R
Sbjct: 54  LICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNNLHYSLDLNFTIR 113

Query: 104 NSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNI-NNERW 163
           N N  +G+YY   + S YY DQ+ GS   + S+Y+  K T V+   + G  L +  +   
Sbjct: 114 NPNQRVGVYYDEFSVSGYYGDQRFGSAN-VSSFYQGHKNTTVILTKIEGQNLVVLGDGAR 173

Query: 164 MEFNNDRSKGTVAFRLEITSTIRFR---ISTWDSK 194
            +  +D   G      ++  ++RF+   I +W  K
Sbjct: 174 TDLKDDEKSGIYRINAKLRLSVRFKFWFIKSWKLK 207

[Close]

BLAST of CmoCh18G002950 vs. ExPASy Swiss-Prot
Match: Q9SJ54 (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.3e-12
Identity = 38/162 (23.46%), Postives = 78/162 (48.15%), Query Frame = 0


Query: 45  ICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGL-ETGFENAQIAFNVTARN 104
           IC + +  ++IV I  F++W+ L+P +PRF + D +V    L +     +     + +RN
Sbjct: 21  ICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRN 80

Query: 105 SNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWME 164
            N  IGIYY  +     YR+Q+I     +   Y+  K   V +  + G ++ I     + 
Sbjct: 81  RNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVA 140

Query: 165 FNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSV 206
             +++++G V   +     +R+++ T  + ++ +H  C   +
Sbjct: 141 LGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHVRCQAFI 182

[Close]

BLAST of CmoCh18G002950 vs. ExPASy TrEMBL
Match: A0A6J1GSN4 (NDR1/HIN1-like protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111457132 PE=4 SV=1)

HSP 1 Score: 458.4 bits (1178), Expect = 1.8e-125
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 225

[Close]

BLAST of CmoCh18G002950 vs. ExPASy TrEMBL
Match: A0A6J1K2E7 (NDR1/HIN1-like protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111490050 PE=4 SV=1)

HSP 1 Score: 449.5 bits (1155), Expect = 8.2e-123
Identity = 221/225 (98.22%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           M SPSQLPVHHTNTPE RPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYE PKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPS+RDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 225

[Close]

BLAST of CmoCh18G002950 vs. ExPASy TrEMBL
Match: A0A5A7UTL7 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006060 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.5e-104
Identity = 187/228 (82.02%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M+SPS LPVHHT+TPE R   P K HH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQRPTAPTKHHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDFSV G GL+ GFENAQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFSVTGFGLDNGFENAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY+DQKIGSTPLLDSYYE PKTTKVL A LSGATLN++ ++WME +N+RSKG V FRL
Sbjct: 121 SVYYKDQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNVDRQQWMEMSNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           EITSTIRFRIS WDSKRHGMHANC VSVG DGMILPSS+DVRCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHGMHANCPVSVGSDGMILPSSKDVRCPVYFT 228

[Close]

BLAST of CmoCh18G002950 vs. ExPASy TrEMBL
Match: A0A1S4DSX4 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103485613 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.5e-104
Identity = 187/228 (82.02%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M+SPS LPVHHT+TPE R   P K HH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQRPTAPTKHHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDFSV G GL+ GFENAQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFSVTGFGLDNGFENAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY+DQKIGSTPLLDSYYE PKTTKVL A LSGATLN++ ++WME +N+RSKG V FRL
Sbjct: 121 SVYYKDQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNVDRQQWMEMSNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           EITSTIRFRIS WDSKRHGMHANC VSVG DGMILPSS+DVRCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHGMHANCPVSVGSDGMILPSSKDVRCPVYFT 228

[Close]

BLAST of CmoCh18G002950 vs. ExPASy TrEMBL
Match: A0A0A0LUA7 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064760 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 185/228 (81.14%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M+SPS LPVHHT+TPE     P KRHH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQHPTAPTKRHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDF+V GL LE GFE+AQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFTVTGLSLENGFESAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY++QKIGSTPLLDSYYE PKTTKVL A LSGATLNI+ +RWME +N+RSKG V FRL
Sbjct: 121 SVYYKEQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNIDRQRWMEISNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           EITSTIRFRIS WDSKRH MHANC VSVG DGMILPSS+D+RCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHVMHANCPVSVGSDGMILPSSKDLRCPVYFT 228

[Close]

BLAST of CmoCh18G002950 vs. NCBI nr
Match: XP_022955056.1 (NDR1/HIN1-like protein 26 [Cucurbita moschata] >XP_023542769.1 NDR1/HIN1-like protein 26 [Cucurbita pepo subsp. pepo] >KAG6573210.1 NDR1/HIN1-like protein 13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012384.1 NDR1/HIN1-like protein 13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 458.4 bits (1178), Expect = 3.6e-125
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 225

[Close]

BLAST of CmoCh18G002950 vs. NCBI nr
Match: XP_023522985.1 (NDR1/HIN1-like protein 26, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.8 bits (1166), Expect = 8.9e-124
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVY 224
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVY
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVY 223

[Close]

BLAST of CmoCh18G002950 vs. NCBI nr
Match: XP_022994264.1 (NDR1/HIN1-like protein 26 [Cucurbita maxima])

HSP 1 Score: 449.5 bits (1155), Expect = 1.7e-122
Identity = 221/225 (98.22%), Postives = 222/225 (98.67%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           M SPSQLPVHHTNTPE RPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT
Sbjct: 1   MQSPSQLPVHHTNTPERRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           YRDQKIGSTPLLDSYYE PKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT
Sbjct: 121 YRDQKIGSTPLLDSYYEGPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           STIRFRISTWDSKRHGMHANCDVSVGPDGMILPS+RDVRCPVYFT
Sbjct: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSARDVRCPVYFT 225

[Close]

BLAST of CmoCh18G002950 vs. NCBI nr
Match: XP_038895222.1 (NDR1/HIN1-like protein 26 [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 9.9e-107
Identity = 189/225 (84.00%), Postives = 207/225 (92.00%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIIT 60
           M SPSQLPVHHTNTPE RP K HH+ARYY HRVKES+TTR+SKLICAIFLSLLLI+GIIT
Sbjct: 1   MSSPSQLPVHHTNTPEQRPTKHHHSARYYAHRVKESITTRVSKLICAIFLSLLLIIGIIT 60

Query: 61  FILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVY 120
           FILWLSLRPHRPRFFIHDFSV GL L+ GFENAQI FNVTARNSNLNIGIYY S++GSVY
Sbjct: 61  FILWLSLRPHRPRFFIHDFSVTGLALDNGFENAQIVFNVTARNSNLNIGIYYDSMSGSVY 120

Query: 121 YRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEIT 180
           Y+DQK+GSTPLLDSYYEAPKTTKVL A LSG TLN++ +RWME +N+RSKG VAFRLEI+
Sbjct: 121 YKDQKLGSTPLLDSYYEAPKTTKVLTAALSGETLNVDRQRWMEISNERSKGAVAFRLEIS 180

Query: 181 STIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           STIRF+IS WDSKRHGMHANC VSVGPDGMILPSS+D+RCPVYFT
Sbjct: 181 STIRFKISAWDSKRHGMHANCVVSVGPDGMILPSSKDIRCPVYFT 225

[Close]

BLAST of CmoCh18G002950 vs. NCBI nr
Match: XP_016899097.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >KAA0056885.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa] >TYJ99388.1 NDR1/HIN1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 187/228 (82.02%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MHSPSQLPVHHTNTPEHR---PIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVG 60
           M+SPS LPVHHT+TPE R   P K HH+ARYY HRVKESLTTR+SKLICAIFLSLLLI+G
Sbjct: 1   MNSPSHLPVHHTDTPEQRPTAPTKHHHSARYYAHRVKESLTTRVSKLICAIFLSLLLIIG 60

Query: 61  IITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITG 120
           IITFILWLSLRPHRPRFFIHDFSV G GL+ GFENAQI FN TARNSNLNIGIYY +++G
Sbjct: 61  IITFILWLSLRPHRPRFFIHDFSVTGFGLDNGFENAQIVFNATARNSNLNIGIYYDAMSG 120

Query: 121 SVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRL 180
           SVYY+DQKIGSTPLLDSYYE PKTTKVL A LSGATLN++ ++WME +N+RSKG V FRL
Sbjct: 121 SVYYKDQKIGSTPLLDSYYEGPKTTKVLTAALSGATLNVDRQQWMEMSNERSKGVVVFRL 180

Query: 181 EITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           EITSTIRFRIS WDSKRHGMHANC VSVG DGMILPSS+DVRCPVYFT
Sbjct: 181 EITSTIRFRISAWDSKRHGMHANCPVSVGSDGMILPSSKDVRCPVYFT 228

[Close]

BLAST of CmoCh18G002950 vs. TAIR 10
Match: AT4G05220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 274.2 bits (700), Expect = 9.0e-74
Identity = 124/219 (56.62%), Postives = 165/219 (75.34%), Query Frame = 0


Query: 7   LPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGIITFILWLS 66
           +P+  +  P  +P+KRHH+A YY HRV+ESL+TR+SK ICA+FL +L  VG+I FILWLS
Sbjct: 8   IPIRTSPVPRAQPMKRHHSASYYAHRVRESLSTRISKFICAMFLLVLFFVGVIAFILWLS 67

Query: 67  LRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSVYYRDQKI 126
           LRPHRPRF I DF V GL   TG ENA+IAFNVT  N N ++G+Y+ S+ GS+YY+DQ++
Sbjct: 68  LRPHRPRFHIQDFVVQGLDQPTGVENARIAFNVTILNPNQHMGVYFDSMEGSIYYKDQRV 127

Query: 127 GSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEITSTIRFR 186
           G  PLL+ +++ P  T ++   L+GA+L +N+ RW EF+NDR++GTV FRL+I STIRF+
Sbjct: 128 GLIPLLNPFFQQPTNTTIVTGTLTGASLTVNSNRWTEFSNDRAQGTVGFRLDIVSTIRFK 187

Query: 187 ISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
           +  W SK H MHANC++ VG DG+ILP     RCPVYFT
Sbjct: 188 LHRWISKHHRMHANCNIVVGRDGLILPKFNHKRCPVYFT 226

[Close]

BLAST of CmoCh18G002950 vs. TAIR 10
Match: AT1G61760.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-68
Identity = 124/226 (54.87%), Postives = 163/226 (72.12%), Query Frame = 0


Query: 1   MHSP-SQLPVHHTNTPEHRPIKRHHTARYYVHRVKESLTTRLSKLICAIFLSLLLIVGII 60
           MH+    LPV   + P  RPI RHH+A   VHRVKESLTTR+SKLICAIFLSLLL +GII
Sbjct: 1   MHNKVDSLPVR--SNPSTRPISRHHSASNIVHRVKESLTTRVSKLICAIFLSLLLCLGII 60

Query: 61  TFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVTARNSNLNIGIYYGSITGSV 120
           TFILW+SL+PHRPR  I  FS+ GL    GFE + I+F +TA N N N+GIYY S+ GSV
Sbjct: 61  TFILWISLQPHRPRVHIRGFSISGLSRPDGFETSHISFKITAHNPNQNVGIYYDSMEGSV 120

Query: 121 YYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDRSKGTVAFRLEI 180
           YY++++IGST L + +Y+ PK T  +   LS   + +N +RWME   DR++G + FRL++
Sbjct: 121 YYKEKRIGSTKLTNPFYQDPKNTSSIDGALSRPAMAVNKDRWMEMERDRNQGKIMFRLKV 180

Query: 181 TSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPSSRDVRCPVYFT 226
            S IRF++ TW SK H M+A+C + +G DGM+L +++D RCPVYFT
Sbjct: 181 RSMIRFKVYTWHSKSHKMYASCYIEIGWDGMLLSATKDKRCPVYFT 224

[Close]

BLAST of CmoCh18G002950 vs. TAIR 10
Match: AT4G01410.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 85.5 bits (210), Expect = 6.0e-17
Identity = 51/162 (31.48%), Postives = 82/162 (50.62%), Query Frame = 0


Query: 43  KLICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLET-GFENAQIAFNVTA 102
           + IC    ++L+I+GII  ILWL  RPH+PR  +   ++  L        +  + F+V A
Sbjct: 42  RAICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAAIYDLNFTAPPLISTSVQFSVLA 101

Query: 103 RNSNLNIGIYYGSITGSVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERW 162
           RN N  + I+Y  ++  V Y+DQ I     L       K+T V+A V+ G  + ++ E  
Sbjct: 102 RNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVIAPVMGGNGIPVSPEVA 161

Query: 163 MEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDV 204
               ND + G V  R+ I   +R++     + R+G +A CDV
Sbjct: 162 NGLKNDEAYGVVLMRVVIFGRLRWKAGAIKTGRYGFYARCDV 203

[Close]

BLAST of CmoCh18G002950 vs. TAIR 10
Match: AT5G22200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-16
Identity = 44/163 (26.99%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 50  LSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGL-ETGFENAQIAFNVTARNSNLNI 109
           L L++ V  + F++W  L PH PRF + D ++    + +  F ++ +   V++RN N  I
Sbjct: 29  LGLIVAVAFVVFLVWAILHPHGPRFVLQDVTINDFNVSQPNFLSSNLQVTVSSRNPNDKI 88

Query: 110 GIYYGSITGSVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERWMEFNNDR 169
           GI+Y  +   V YR+Q++    LL S Y+      V +  L G+ + +        N D 
Sbjct: 89  GIFYDRLDIYVTYRNQEVTLARLLPSTYQGHLEVTVWSPFLIGSAVPVAPYLSSALNEDL 148

Query: 170 SKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMI 212
             G V   ++I   +R+++ +W S  + +H NC   +   G +
Sbjct: 149 FAGLVLLNIKIDGWVRWKVGSWVSGSYRLHVNCPAFITVTGKL 191

[Close]

BLAST of CmoCh18G002950 vs. TAIR 10
Match: AT2G27080.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 82.0 bits (201), Expect = 6.6e-16
Identity = 56/173 (32.37%), Postives = 95/173 (54.91%), Query Frame = 0


Query: 45  ICAIFLSLLLIVGIITFILWLSLRPHRPRFFIHDFSVPGLGLETGFENAQIAFNVT--AR 104
           + A+F+ L+++ GI   +L+L  RP  P++ I  FSV G+ L +       +FNVT  +R
Sbjct: 79  LAAVFI-LIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLNS-TSPISPSFNVTVRSR 138

Query: 105 NSNLNIGIYYGSITG-SVYYRDQKIGSTPLLDSYYEAPKTTKVLAAVLSGATLNINNERW 164
           N N  IG+YY   +   VYY D  I S  ++  +Y+  K   V+  VLSG+ + + +   
Sbjct: 139 NGNGKIGVYYEKESSVDVYYNDVDI-SNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMR 198

Query: 165 MEFNNDRSKGTVAFRLEITSTIRFRISTWDSKRHGMHANCDVSVGPDGMILPS 215
            E  N+ SK TV F+L+I + ++ +  +  +    ++ +CDV+V  D +  PS
Sbjct: 199 KEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTV--DKLTAPS 246

The following BLAST results are available for this feature:

BLAST of CmoCh18G002950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVD2	9.3e-15	32.37	NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1	[more]
Q9FI03	2.1e-14	28.85	NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1	[more]
O48915	1.5e-12	31.18	Protein NDR1 OS=Arabidopsis thaliana OX=3702 GN=NDR1 PE=1 SV=1	[more]
Q9SRN1	4.3e-12	27.74	NDR1/HIN1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=NHL2 PE=2 SV=1	[more]
Q9SJ54	7.3e-12	23.46	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1	[more]

BLAST of CmoCh18G002950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSN4	1.8e-125	100.00	NDR1/HIN1-like protein 26 OS=Cucurbita moschata OX=3662 GN=LOC111457132 PE=4 SV=...	[more]
A0A6J1K2E7	8.2e-123	98.22	NDR1/HIN1-like protein 26 OS=Cucurbita maxima OX=3661 GN=LOC111490050 PE=4 SV=1	[more]
A0A5A7UTL7	8.5e-104	82.02	NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S4DSX4	8.5e-104	82.02	NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103485613 PE=4 SV=1	[more]
A0A0A0LUA7	1.0e-101	81.14	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G064760 PE=4 ...	[more]

BLAST of CmoCh18G002950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955056.1	3.6e-125	100.00	NDR1/HIN1-like protein 26 [Cucurbita moschata] >XP_023542769.1 NDR1/HIN1-like pr...	[more]
XP_023522985.1	8.9e-124	100.00	NDR1/HIN1-like protein 26, partial [Cucurbita pepo subsp. pepo]	[more]
XP_022994264.1	1.7e-122	98.22	NDR1/HIN1-like protein 26 [Cucurbita maxima]	[more]
XP_038895222.1	9.9e-107	84.00	NDR1/HIN1-like protein 26 [Benincasa hispida]	[more]
XP_016899097.1	1.8e-103	82.02	PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo] >KAA0056885.1 NDR1/HIN1-like...	[more]

BLAST of CmoCh18G002950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05220.1	9.0e-74	56.62	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G61760.1	2.0e-68	54.87	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G01410.1	6.0e-17	31.48	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT5G22200.1	3.0e-16	26.99	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G27080.1	6.6e-16	32.37	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 98..201 e-value: 2.8E-9 score: 37.5
IPR044839	Protein NDR1-like	PANTHER	PTHR31415	OS05G0367900 PROTEIN	coord: 22..225
None	No IPR available	PANTHER	PTHR31415:SF3	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 22..225

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G002950.1	CmoCh18G002950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098542	defense response to other organism
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma