CmoCh18G002810 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh18G002810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Patatin
Location	Cmo_Chr18: 1842684 .. 1843960 (-)
RNA-Seq Expression	CmoCh18G002810
Synteny	CmoCh18G002810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGTAGATGATGCTTCATAATCCTCAGAATACTGGACTCAGGGATTTGCAAGAGAAGCTACCAAGCAGCTTCCTGCTGCTGATGCTTGTTAGGATTTGTGTTTCCTAATTCTAAAGGAAACTTCCTAGGATCCCATCCAGACAGGAACCAATTAGCAGTTTCAACCTTCAAGGTAATCCAGTTTTGGAGAAAATGTTCCAACTTTTCTACAGGGAGGTTTGGAGAAAATCAACTTTTCTATAGGGAGGTTTGTTCCTGCAATTGTATGTTTGAAAATATATGAAGTTTTTCGATAACGTCTCATCCCACCCACCCCCAAGTCAAAATGTACGTAAGGATGAACATGTGAGATCACATATTGGTTAGAGAGGGAACAAAAATATTCCTTATAAAGATGTGGAAACCTCTCCCTAACAAAGACATTCTAAAAACCGTGAGGCTAACGGCGATACATAACGGGTCAAAGCAAACAATATCGGCTCGCAATTGACTTAGGATTATTACAAATGGTATCAAAGCTCAACAACAGACGGTGTGCCAGAGAGGATGCTCAAAGGGAGATGAATTGTGAGATCCCAGGTCGGTTGGTGAGGGGAACGAAATATTCCTCATAAATGTGTGGAAACCTCTCCCTAACAAACGCATTTTAAAAACTGTAAAGCTGACAGCGATACGTAACGGGTCAAAGTGGACAAAATATGAACTTGAACCACCACAAACCAAAAACTAATGTCAAGTTTCTCACTTTATTGTCAAGTTTCCATCAATACATAAAGTACTAACCTAACAGGAACAGCCACCACAACAATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAACATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA

mRNA sequence

ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGAACAGCCACCACAACAATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAACATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA

Coding sequence (CDS)

ATGGCTGCTACTGTAACTGCTCCTGTTGCCATTGGAACTCGAGGCACCGTGGGATCGCTCGTCAAGAACGAAATTGATTATTATGCCAAGATTGAGCTTGAAAGATGCTGCAGCAGCAGCAGCAGCTCACATAGGACCCAAAGACCTGATATGGCTTCTTCTAGCTGCAGCAGCTCCCCTCCCACTTTCTGGCAGTCTATAATGTTGTGGCGAAGGAAGAAGAAGCGAACCGGGATTTGTTTTGTCCCAAAAATGAATAAGATTTCTGGGTTCGGTTACACGATCCTTCGGAATGACTTCCACAGCTTTCACATGAACAGCCACCACAACAATTCAAGCCCACATCTCTCCTCTTCTATTAGCAGATCCAAACCTACCAATAGGGAGCGGACTCATTCAACAAAAGCATTACAAATTTCAACCAGCGCAAAAGCTAGAACATTAAACTTGACAATGGAATTCCTCGTCTGTAGAACAAGAACAAAATGA

Protein sequence

MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDFHSFHMNSHHNNSSPHLSSSISRSKPTNRERTHSTKALQISTSAKARTLNLTMEFLVCRTRTK

Homology

[Close]

BLAST of CmoCh18G002810 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQ
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQ 63

Query: 66  SIMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
           SIM WRRKKK T   F+ K            MNKISG  YTIL+NDFHS H+
Sbjct: 64  SIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of CmoCh18G002810 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 7.9e-27
Identity = 72/111 (64.86%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 7   APVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQS 66
           APVAIGTRGT+GSLVK EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQS
Sbjct: 21  APVAIGTRGTIGSLVKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQS 80

Query: 67  IMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
           +M WRRK K T   FV K            MNKISG  YTIL+NDFHS HM
Sbjct: 81  LMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 127

[Close]

BLAST of CmoCh18G002810 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 6.3e-24
Identity = 69/113 (61.06%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSS-CSSSPPTFW 65
           TAPVAIGTRGTVGSLVK EIDY+AKIE ERC  +          DMASSS  SSSPPTFW
Sbjct: 20  TAPVAIGTRGTVGSLVKKEIDYFAKIEFERCSGN----------DMASSSRRSSSPPTFW 79

Query: 66  QSIMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
            ++M WRRKKKR G  F+ K            +NKISGF YTIL+NDF+S HM
Sbjct: 80  HTVMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTILQNDFNSLHM 122

[Close]

BLAST of CmoCh18G002810 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.5e-21
Identity = 62/97 (63.92%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQ
Sbjct: 20  TAPVAIGTRGTIGSLIKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQ 79

Query: 66  SIMLWRRKKKRTGICFVPK------------MNKISG 91
           SIM WRRKKK T   F+ K            MNKISG
Sbjct: 80  SIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISG 112

[Close]

BLAST of CmoCh18G002810 vs. ExPASy TrEMBL
Match: I1M118 (Uncharacterized protein OS=Glycine max OX=3847 GN=100803137 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.4e-15
Identity = 52/115 (45.22%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 5   VTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASS-SCSSSPPTF 64
           + APVAIGTRGT+GSLV+ EI+Y+ K ELER  SS          DM S  S S S P+F
Sbjct: 1   MAAPVAIGTRGTIGSLVRKEIEYFTKFELERRASSQKPQQHFVDMDMVSGRSYSISRPSF 60

Query: 65  WQSIMLWRRKKKRTGICFVPK-------------MNKISGFGYTILRNDFHSFHM 106
           W+ +  W+R+K+R    F+PK             +NK +GF Y ILRND ++FH+
Sbjct: 61  WELLTTWKRRKRRGTSGFLPKICSVIEVAESHNHLNKTAGFSYRILRNDINNFHL 115

[Close]

BLAST of CmoCh18G002810 vs. NCBI nr
Match: KAG7012374.1 (hypothetical protein SDJN02_25126, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSP 60
           MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSP
Sbjct: 44  MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSP 103

Query: 61  PTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDFHSFHM 106
           PTFWQSIM WRRKKKRTGICFVPKMN+ISGFGYTILRNDFHSFHM
Sbjct: 104 PTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM 148

[Close]

BLAST of CmoCh18G002810 vs. NCBI nr
Match: KAG6573198.1 (hypothetical protein SDJN03_27085, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209.5 bits (532), Expect = 2.1e-50
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSP 60
           MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSP
Sbjct: 61  MAATVTAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSP 120

Query: 61  PTFWQSIMLWRRKKKRTGICFVPKMNKISGFGYTILRNDFHSFHM 106
           PTFWQSIM WRRKKKRTGICFVPKMN+ISGFGYTILRNDFHSFHM
Sbjct: 121 PTFWQSIMSWRRKKKRTGICFVPKMNRISGFGYTILRNDFHSFHM 165

[Close]

BLAST of CmoCh18G002810 vs. NCBI nr
Match: KAG6584077.1 (hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.5 bits (358), Expect = 3.2e-30
Identity = 76/113 (67.26%), Postives = 84/113 (74.34%), Query Frame = 0


Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R Q PDMA+S CSSSPPTFW 
Sbjct: 4   TASVAIGTRGTIGSLIKKEIDYFAKIELERC--SSRSSQRPQAPDMATSGCSSSPPTFWH 63

Query: 66  SIMLWRRKKKRTGICFVPK-------------MNKISGFGYTILRNDFHSFHM 106
           S+M WRRKKKR+   FVPK             MNKISGF YTIL+N+FHS HM
Sbjct: 64  SVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTILQNNFHSLHM 114

[Close]

BLAST of CmoCh18G002810 vs. NCBI nr
Match: KAG7019678.1 (hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-29
Identity = 75/114 (65.79%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TA VAIGTRGT+GSL+K EIDY+AKIELERC  SS SS R Q PDMA+S CSS PPTFW 
Sbjct: 20  TASVAIGTRGTIGSLIKKEIDYFAKIELERC--SSRSSQRPQAPDMATSGCSSLPPTFWH 79

Query: 66  SIMLWRRKKKRTGICFVPK-------------MNKISGFGYTILRNDFHSFHMN 107
           S+M WRRKKKR+   FVPK             MNKISGF YTIL+N+FHS HM+
Sbjct: 80  SVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFNYTILQNNFHSLHMS 131

[Close]

BLAST of CmoCh18G002810 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-27
Identity = 72/112 (64.29%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 6   TAPVAIGTRGTVGSLVKNEIDYYAKIELERCCSSSSSSHRTQRPDMASSSCSSSPPTFWQ 65
           TAPVAIGTRGT+GSL+K EIDY+AKIELE    +S SS R+Q P+MASS C SSPPTFWQ
Sbjct: 4   TAPVAIGTRGTIGSLIKKEIDYFAKIELE----TSISSQRSQGPEMASSGCRSSPPTFWQ 63

Query: 66  SIMLWRRKKKRTGICFVPK------------MNKISGFGYTILRNDFHSFHM 106
           SIM WRRKKK T   F+ K            MNKISG  YTIL+NDFHS H+
Sbjct: 64  SIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of CmoCh18G002810 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-09
Identity = 41/113 (36.28%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 5   VTAPVAIGTRGTVGSLVKNEIDYYAKIEL------ERCCSSSSSSHRTQRPDMASSSCSS 64
           + AP+AIGTRGT+GSLV+ EIDY+            R  +S  + +  ++ D +SS   S
Sbjct: 1   MAAPIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGS 60

Query: 65  SPPTFWQSIMLWRRKKKRT---GICFVPKM---------NKISGFGYTILRND 100
                W S   WR+KK++T   G  F P M         N++ GF Y IL++D
Sbjct: 61  -----WFSKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENRVPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of CmoCh18G002810 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh18G002810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DSE9	1.2e-27	64.29	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
A0A0A0LX43	7.9e-27	64.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
A0A6J1CHB1	6.3e-24	61.06	uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7UTL1	6.5e-21	63.92	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
I1M118	2.4e-15	45.22	Uncharacterized protein OS=Glycine max OX=3847 GN=100803137 PE=4 SV=1	[more]

BLAST of CmoCh18G002810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012374.1	2.1e-50	98.10	hypothetical protein SDJN02_25126, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6573198.1	2.1e-50	98.10	hypothetical protein SDJN03_27085, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6584077.1	3.2e-30	67.26	hypothetical protein SDJN03_20009, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019678.1	1.6e-29	65.79	hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_016898893.1	2.5e-27	64.29	PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]	[more]

BLAST of CmoCh18G002810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	5.6e-09	36.28	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..124
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 5..104
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 5..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh18G002810.1	CmoCh18G002810.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000162	tryptophan biosynthetic process
cellular_component	GO:0005737	cytoplasm