CmoCh17G008780 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G008780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr17: 7998302 .. 7998589 (+)
RNA-Seq Expression	CmoCh17G008780
Synteny	CmoCh17G008780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

mRNA sequence

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

Coding sequence (CDS)

ATGCACATGGTTCTTGACAGTGCACTGTCTTCTCCTCACAGGAGGTCTCCATCATTCTGTAAGTCCTTTACGGATGAGTTGGATGGTTGGTCGACTCTCGTTCAGCGACATCGCTTCCTCCTGACGGCACTTGTCCTCCTGACTGCTCTTTGCACAATTTACCTTTACTTTGCTGTCACCTTAGGCTCTTCCTCCTCTTGCTTTGGATTGACTGGGGCGCAAAAAGCTGAGTGTCTACAGGAGCTTGTAAAGACTTCCATGGCTAAAGGGAAGCTGAAAATTCTGTGA

Protein sequence

MHMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLGSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL

Homology

[Close]

BLAST of CmoCh17G008780 vs. ExPASy TrEMBL
Match: A0A6J1GNW1 (uncharacterized protein LOC111455793 OS=Cucurbita moschata OX=3662 GN=LOC111455793 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.4e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MHMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVT 60
          MHMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVT
Sbjct: 1  MHMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVT 60

Query: 61 LGSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          LGSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL
Sbjct: 61 LGSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 95

[Close]

BLAST of CmoCh17G008780 vs. ExPASy TrEMBL
Match: A0A6J1JRU9 (uncharacterized protein LOC111488353 OS=Cucurbita maxima OX=3661 GN=LOC111488353 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG
Sbjct: 1  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 60

Query: 63 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL
Sbjct: 61 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 93

[Close]

BLAST of CmoCh17G008780 vs. ExPASy TrEMBL
Match: A0A0A0K6S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431400 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.0e-34
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 3   MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
           MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 27  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 86

Query: 63  SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 87  SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 119

[Close]

BLAST of CmoCh17G008780 vs. ExPASy TrEMBL
Match: A0A5D3CG60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001550 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 79/94 (84.04%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 2   HMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 61
           +MVLDS LSSPHRRSPSF KSF +EL  WSTL+QRHRFLLTALVLLT LCTIYLYFAVTL
Sbjct: 26  NMVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCTIYLYFAVTL 85

Query: 62  GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           GSSSSCFGLTG QKA+C  EL KTS+AKGKLKIL
Sbjct: 86  GSSSSCFGLTGTQKAQCQLELAKTSIAKGKLKIL 119

[Close]

BLAST of CmoCh17G008780 vs. ExPASy TrEMBL
Match: A0A1S4E387 (uncharacterized protein LOC103499851 OS=Cucumis melo OX=3656 GN=LOC103499851 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.3e-33
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLDS LSSPHRRSPSF KSF +EL  WSTL+QRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 1  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLMQRHRFLLTALVLLTFLCTIYLYFAVTLG 60

Query: 63 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          SSSSC+GLTG QKA+C  EL KTS+AKGKLKIL
Sbjct: 61 SSSSCYGLTGTQKAQCQLELAKTSIAKGKLKIL 93

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: XP_022953174.1 (uncharacterized protein LOC111455793 [Cucurbita moschata])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MHMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVT 60
          MHMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVT
Sbjct: 1  MHMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVT 60

Query: 61 LGSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          LGSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL
Sbjct: 61 LGSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 95

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: XP_022991821.1 (uncharacterized protein LOC111488353 [Cucurbita maxima])

HSP 1 Score: 181.4 bits (459), Expect = 3.6e-42
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG
Sbjct: 1  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 60

Query: 63 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL
Sbjct: 61 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 93

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: KAG6575637.1 (hypothetical protein SDJN03_26276, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.3 bits (456), Expect = 8.1e-42
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 2   HMVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 61
           +MVLDSALSSPHRRSPSFCKSFT+ELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL
Sbjct: 29  NMVLDSALSSPHRRSPSFCKSFTEELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTL 88

Query: 62  GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
           GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL
Sbjct: 89  GSSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 122

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: XP_023547592.1 (uncharacterized protein LOC111806485 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLDSALSSPHRRSPSFCKSFTDELDGWSTLV+RHRFLLTALVLLTALCTIYLYFAVTLG
Sbjct: 1  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVRRHRFLLTALVLLTALCTIYLYFAVTLG 60

Query: 63 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL
Sbjct: 61 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 93

[Close]

BLAST of CmoCh17G008780 vs. NCBI nr
Match: XP_011659492.1 (uncharacterized protein LOC101216292 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 6.2e-34
Identity = 81/93 (87.10%), Postives = 83/93 (89.25%), Query Frame = 0


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLDS LSSPHRRSPSF KSF +EL  WSTLVQRHRFLLTALVLLT LCTIYLYFAVTLG
Sbjct: 1  MVLDSVLSSPHRRSPSFRKSFPNELGSWSTLVQRHRFLLTALVLLTFLCTIYLYFAVTLG 60

Query: 63 SSSSCFGLTGAQKAECLQELVKTSMAKGKLKIL 96
          SSSSCFGLTG QKA+C  EL KTSMAKGKLKIL
Sbjct: 61 SSSSCFGLTGTQKAQCHLELAKTSMAKGKLKIL 93

[Close]

BLAST of CmoCh17G008780 vs. TAIR 10
Match: AT1G16170.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79660.1); Has 55 Blast hits to 55 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLD  +SSP RR     K + DEL  WSTL+QRH++LLTAL LL  LCT+YLYFAVTLG
Sbjct: 1  MVLDGLVSSPSRRQQCLKKQW-DELGSWSTLIQRHQYLLTALALLAFLCTVYLYFAVTLG 60

Query: 63 S-SSSCFGLTGAQKAECLQELVKTSMAKGKLK 94
          +  SSC+GLTG  KA C  +LV+ +++KGKLK
Sbjct: 61 ARHSSCYGLTGKDKAMCQLQLVQ-ALSKGKLK 90

[Close]

BLAST of CmoCh17G008780 vs. TAIR 10
Match: AT1G79660.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-18
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 3  MVLDSALSSPHRRSPSFCKSFTDELDGWSTLVQRHRFLLTALVLLTALCTIYLYFAVTLG 62
          MVLD  +SSP RR P   K   D+L   ST+VQRHRFLLTA++LL  LCTIY+YFAVTLG
Sbjct: 1  MVLDGIVSSPLRR-PHALKKQWDDLGSCSTVVQRHRFLLTAMLLLAFLCTIYIYFAVTLG 60

Query: 63 SSS-SCFGLTGAQKAECLQELVKTSMAKGKLK 94
          +    C G+TG  KA C  E ++ S + GKLK
Sbjct: 61 ARHLLCSGMTGKDKAMCQMEHIQASFSNGKLK 91

The following BLAST results are available for this feature:

BLAST of CmoCh17G008780 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh17G008780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GNW1	5.4e-44	100.00	uncharacterized protein LOC111455793 OS=Cucurbita moschata OX=3662 GN=LOC1114557...	[more]
A0A6J1JRU9	1.8e-42	100.00	uncharacterized protein LOC111488353 OS=Cucurbita maxima OX=3661 GN=LOC111488353...	[more]
A0A0A0K6S1	3.0e-34	87.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G431400 PE=4 SV=1	[more]
A0A5D3CG60	1.1e-33	84.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E387	3.3e-33	83.87	uncharacterized protein LOC103499851 OS=Cucumis melo OX=3656 GN=LOC103499851 PE=...	[more]

BLAST of CmoCh17G008780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953174.1	1.1e-43	100.00	uncharacterized protein LOC111455793 [Cucurbita moschata]	[more]
XP_022991821.1	3.6e-42	100.00	uncharacterized protein LOC111488353 [Cucurbita maxima]	[more]
KAG6575637.1	8.1e-42	97.87	hypothetical protein SDJN03_26276, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023547592.1	1.1e-41	98.92	uncharacterized protein LOC111806485 [Cucurbita pepo subsp. pepo]	[more]
XP_011659492.1	6.2e-34	87.10	uncharacterized protein LOC101216292 [Cucumis sativus]	[more]

BLAST of CmoCh17G008780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16170.1	1.3e-21	60.87	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G79660.1	1.3e-18	56.52	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34774:SF1	EPHRIN-A3 PROTEIN	coord: 2..95
None	No IPR available	PANTHER	PTHR34774	EPHRIN-A3 PROTEIN	coord: 2..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G008780.1	CmoCh17G008780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane