CmoCh17G003460 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAGACTCATAGCTTAGCCATTTTCATTGCTAAAGCTTAGTCGTACTGCTGCCTCTTCCATTCACGAGCATTTCCACTATTTTACAGTGAGAGAGAGAGAGATTTCAGAGAGAGAAGTTAGAGAAAGAGAGATCTTCCATTGATGCGGCTTGTGGAGGAAGATGAAGAGACTCTGTAAGGCGTTTTGAGAAGGTTTTGTCGATCTTATTTGAGGCAGTGTTTGTTTAGTTTAAGGGGATGGGGAAAACGCCGTGCTGTGCGAAGGAAGGGCTGAGAAGAGGCCGTTGGACGGCGGAGGAAGATGATAAACTGAAGAAGTATATCGAAGCGAACGGAGAAGGTTCATGGAAATCGTTGCCGAAGAATGCTGGTGAGATTGATTTTGATTTGCTGTTTGATTTTTTGTGCGATTAACTGCTGCGATTCTTCTGGTTGTTCTATCTGATCTGAGACTTTGAATTAATTGATCTGAAACTGCTTCTTCTCGTTCTATCTGAGACTGTGAATTAATTGATCTGAAACTGCTTCTTCTTGTTCTATCTGAGATTATGAATTAATCTGAAATTGCTTCCTCTAGTTCTATGTGAGAATATGAACTGATCCGAGTATATGCGCGTGAAAATTTAGGGCTGTTGAGGTGCGGAAAGAGTTGTAGGTTGAGATGGATTAATTACTTGAGAACGGATTTGAAGCGAGGGAATATCACTCCTCAAGAAGACGAAACTATTCTCAAGTTGCACACGACTTTAGGCAACCGGTTCGTCTCTCTCTCTCCTCTCTTAATTAAGCATGGAATTTCTTGCGCATCTCATTGCCATTCTTTTCAAAACAGTTTTACTGCCCGATTATAATTATTGATGAAATAATCGTATAGGTTTTAATTAGAGTATAAAATTTCAAATAAACGGCATTTGTATGAGGTAATCACCATTTGAAACTCCAAACAACTGACATTTTGCTTTGTTGTTCTTGTCTAATCGTTCTCTTCTTGATCATCATACCTTTTTTTTTGGCACATTTGAACTTTTAATTTCATTTTCTTTATTCTCTTTTTTTTTTTTTTTGTACTATTATTTTTTCCACTTCTGATTTTCATTTTGAGCTTTACAACTGACAACATTGTTCTGGTCCAAGTCGTTACTTTCTTGACGGTAATCATTCTTTTGGCACATTCGATCGTTTTCTTTAATTTTTTTCTCCTTTTTTCCCTTCTTTTTGAGATTCTCATTTGAAGCTTCACTAACTGACCTCTGATTTGTTGTTCTTGTCCACATCGTTCTCTCTCTCTCTCGTTTTTAATCATCATAATCAGTTTTTAGGCACATTTTAACTTGTTTTTATTATCACTTACTTTTGATTTTTGATTTTGCAAAATTATTATAGACAGAATCCCGATGACTCATACATATAG TAGACTCATAGCTTAGCCATTTTCATTGCTAAAGCTTAGTCGTACTGCTGCCTCTTCCATTCACGAGCATTTCCACTATTTTACAGTGAGAGAGAGAGAGATTTCAGAGAGAGAAGTTAGAGAAAGAGAGATCTTCCATTGATGCGGCTTGTGGAGGAAGATGAAGAGACTCTGTAAGGCGTTTTGAGAAGGTTTTGTCGATCTTATTTGAGGCAGTGTTTGTTTAGTTTAAGGGGATGGGGAAAACGCCGTGCTGTGCGAAGGAAGGGCTGAGAAGAGGCCGTTGGACGGCGGAGGAAGATGATAAACTGAAGAAGTATATCGAAGCGAACGGAGAAGGTTCATGGAAATCGTTGCCGAAGAATGCTGGGCTGTTGAGGTGCGGAAAGAGTTGTAGGTTGAGATGGATTAATTACTTGAGAACGGATTTGAAGCGAGGGAATATCACTCCTCAAGAAGACGAAACTATTCTCAAGTTGCACACGACTTTAGGCAACCGACAGAATCCCGATGACTCATACATATAG ATGGGGAAAACGCCGTGCTGTGCGAAGGAAGGGCTGAGAAGAGGCCGTTGGACGGCGGAGGAAGATGATAAACTGAAGAAGTATATCGAAGCGAACGGAGAAGGTTCATGGAAATCGTTGCCGAAGAATGCTGGGCTGTTGAGGTGCGGAAAGAGTTGTAGGTTGAGATGGATTAATTACTTGAGAACGGATTTGAAGCGAGGGAATATCACTCCTCAAGAAGACGAAACTATTCTCAAGTTGCACACGACTTTAGGCAACCGACAGAATCCCGATGACTCATACATATAG MGKTPCCAKEGLRRGRWTAEEDDKLKKYIEANGEGSWKSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNITPQEDETILKLHTTLGNRQNPDDSYI Homology
BLAST of CmoCh17G003460 vs. ExPASy Swiss-Prot
Match: O22264 (Transcription factor MYB12 OS=Arabidopsis thaliana OX=3702 GN=MYB12 PE=1 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 1.3e-37 Identity = 67/88 (76.14%), Postives = 79/88 (89.77%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy Swiss-Prot
Match: Q9FJ07 (Transcription factor MYB111 OS=Arabidopsis thaliana OX=3702 GN=MYB111 PE=1 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 2.4e-36 Identity = 68/88 (77.27%), Postives = 76/88 (86.36%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy Swiss-Prot
Match: Q9LZK4 (Transcription factor MYB11 OS=Arabidopsis thaliana OX=3702 GN=MYB11 PE=1 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 4.1e-36 Identity = 64/88 (72.73%), Postives = 78/88 (88.64%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy Swiss-Prot
Match: P27898 (Myb-related protein P OS=Zea mays OX=4577 GN=P PE=2 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 6.9e-36 Identity = 66/88 (75.00%), Postives = 76/88 (86.36%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy Swiss-Prot
Match: P81393 (Myb-related protein 308 OS=Antirrhinum majus OX=4151 GN=MYB308 PE=2 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 2.1e-32 Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy TrEMBL
Match: A0A6J1L4U4 (transcription repressor MYB6-like OS=Cucurbita maxima OX=3661 GN=LOC111499144 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy TrEMBL
Match: A0A6J1H7Q3 (transcription factor MYB8-like OS=Cucurbita moschata OX=3662 GN=LOC111460330 PE=4 SV=1) HSP 1 Score: 191.0 bits (484), Expect = 2.2e-45 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy TrEMBL
Match: A0A5D3BUZ5 (Myb-related protein Myb4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00200 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 4.2e-44 Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy TrEMBL
Match: A0A1S3C7U9 (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103497807 PE=4 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 4.2e-44 Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of CmoCh17G003460 vs. ExPASy TrEMBL
Match: A0A0A0KCZ1 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G311520 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43 Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0
BLAST of CmoCh17G003460 vs. TAIR 10
Match: AT2G47460.1 (myb domain protein 12 ) HSP 1 Score: 156.8 bits (395), Expect = 9.0e-39 Identity = 67/88 (76.14%), Postives = 79/88 (89.77%), Query Frame = 0
BLAST of CmoCh17G003460 vs. TAIR 10
Match: AT5G49330.1 (myb domain protein 111 ) HSP 1 Score: 152.5 bits (384), Expect = 1.7e-37 Identity = 68/88 (77.27%), Postives = 76/88 (86.36%), Query Frame = 0
BLAST of CmoCh17G003460 vs. TAIR 10
Match: AT3G62610.1 (myb domain protein 11 ) HSP 1 Score: 151.8 bits (382), Expect = 2.9e-37 Identity = 64/88 (72.73%), Postives = 78/88 (88.64%), Query Frame = 0
BLAST of CmoCh17G003460 vs. TAIR 10
Match: AT2G16720.1 (myb domain protein 7 ) HSP 1 Score: 138.7 bits (348), Expect = 2.5e-33 Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = 0
BLAST of CmoCh17G003460 vs. TAIR 10
Match: AT4G38620.1 (myb domain protein 4 ) HSP 1 Score: 138.3 bits (347), Expect = 3.3e-33 Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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