Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAGGGTAAAGGGGAAAGGGGGGGAAGTTGAGAGCAGACTGGTTCCACCAAAGCGTATGAATCGGTTTGTTTGCTGCAAATTTCTTCAGACTTTTTCCCCCATAACTCTCTGCTTTGACCATTAGCTTTCTCTCTCTCTCTCTCTCTCTCTACAGTTTTCTAGGTTTCAGATTTTCCCCCATTTCCTGTTCTAAGAAGGAGGCTTCCCTTTGATTTTGTCGGCACTCCAATGGCGGATTTCACTTCTTCCTCGCTCAATGCTCTTTCTCCTCCCTCCGATGATGCTTTTGAAGACGACGCTTGCTGTATTTGCCTCGATCCTTTTACCTCCCACGATCCTCCCTCTGTAAGAACCTCCTTTCCCCTGCTGCTCTTTCCAGATCGTCTTCCTTTCACTGCTTGCTTTTCTTTTGAGTTGGTGTTCATCCTACTCTACAACTTCTGCATCTTTATATAGTTTGTTCTTCATTCTATTTGCTTCTTCTTATTACCATCATCTTATTAGCTACCACATCACCTACCTCTTACTCTTTTACTCCCGGCGGCTAGTTGCTCGACTGAACACTGTAGAATGTAGGAACTGGTTTGAGTGTCACTGTAGAATGTAGGTGGTTGATTTCTGGTGATGGCTGTGTTCTGGGATTCTTTTGTTTTCTGTCTAGCTACTTTGTTTTGATAACCACTTGGTGTGATGGGATGTTTAAGTTCGATTTAGAATTGGTAAGTAGATGAGTGAGTGACTGGGATTGGCTGTCCAAGTGATTGTGTGAGATCCCTATCGATTGGAGAGGGGAACGGAGTATTCTTTATAAGGGTGTGCAAAATCACTCCCTAGCTGACATCGTTTTAAGGGGAAGCCCGAATGGAAAAGCCTAAAGAGGACAATATTGGCTAGTAGTGGGCTTGGGCGGTTACAAATGGTATTGGAGCCAAAGAGTACCTTGGAGTTGAAGGGGGTGGTTTGTGAGATCCCCATCGGTTAGAGAGGAGAACAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAATAGACACGTTTTAAAAACCTTGAGAGGAAGCTCGAAAGGGAAAGTTTAAAGAGGACAATATCTGCTAGCGTTGGGCTTGAGCTCAGAATGTTGAGATCAAATGAAGCGATTTCATCGCTCCTCTAGCTAAGGGGGTTTTGTATCAAAGATGTTGCTGCTCCATTCTATGTGGTATATGTGGCCTTTATGTTTGGATTAACCTTGTCTATTGTTCAAATTTCAGATCACCAGTTGCAAGCATGAATATCATCTCCAATGTATTCTTGATTGGTAGACTTCTTGAAGATCATCCTTGTTTATATGATCTTCTAAAAATAGGTTGATTCGAGTCTTACTTTTCGGTTATTGATTCTTTCAGGTCTCAACGAAGCAACGAGTGCCCAATCTGTTGCCAGTTGCTAGTGTTGAGGGATCCTGTTGGGTATGTAACTTTGTCTTAGAAAGTTTAATTCCTCTATATTCTCGTGCCTCGCCCGTGTCTCCCTCGATCTATCTAATGAATGAAAACAATGCAAGCTTTCTAATTAATCTAGTGCTAATTCAACTATTCTACAGCCAGGAGCTTCTAGCAGCCATTGCTAATGAAAAGCTTTTGAAGTCTAGAAGCTTGTCTTCTGTTGCATCCACTTCTTTGCGTTTCCACGAAAACTTCGATGTCGACCATGTGAGTAGTTCTAATAAATCTGACAATCTATTCGACGTCCTTATTCTTTCAATGAGGATCGACTATTATTAAGAAGCAAAATTGGTTCCTTCAGGACTCCTCTCGTTCAGATGACTCTGACTTTGATGACCTGATTATGCAGCATCTTGCTGCTGCAGCTAGCCGAGCTCGGTATGTTCATAGAAGGGAGAGGCAAAGACAATTTGGACTTGGACCTTCACAAGGTGCCTCTGCATGTCCAGAAGAGGTTCCAGTGCTAATATGCCCATTGTCACCTAGATTTCAAGATGCTTCTCTAAGTTCACCTAATAGTGATTCACCATCTCCTGGTTCCCCTTTGTCGTCTGGTGGTCGAACCGGAATTAGTAAAATCTCGCCTAGGTATTTTACGTCCCCAGACTAATGTATCTATTTCATGCTTTGCTCTTAACACCAACAATAAATAACTGTAGAAGAGAGAATGCCCTGCTAGAAATACTCAAGATACCCTCAAGCTTCAAAACGAGTAAAGCGTTCGTTTCTTTTGCTGTCTAACCTACATCTTCTTTGTCATATAGGGTTTTACTGACCGAGACATCGTCGGGTAGTCAACAGAAAACAAACCAATCTGAGGGGCTTTCTTTCCCAGATTCCATCAAATCCAAATGGTCTGCTACTTCTGCAAAGTAAGTGTAATGGGAGTTTGCTTCTCTTAAACTAGTTTCTACATGATACCTCATCAATGCTATGATGCATATCAAGATTTCTAAATTGTACCAATACAGGTACAAGGAGTCAATATGGCGAAGCACTCAAGGTATTAAGGAGAAACTGCTTGCTCGTAACAGCTCCGTGAAGGAGCTAAGCCGAGGAGTGAAGCGTGAAGTAAGTGCTGGGATTGCTGGTGTTGCTCGAATGATCGATCGCCTAGATTTGTCTTCAAAAAGGAATGCTGCTTCTGTTTCCTTTTTCAGCTGCAGTGGAGGTACATCAAACTCCATGAAAGGAAAGAACGTAGTAATGCAAGAAAGTGGTGTCACAGATGGTTCAGTAAAAAATGACAGAATATGTACTGGTTCACCCTCACATGTTTCCCCTACGGTTCCAGGCTCCGTCGATGATTCTCTAGCTCAGGTACTTCACTTCATGTCTTTAGACAATTTTAAACACGAACTGTTACCAACCTATACCTGTTTCCAGGTTAACTTTGTAAACGACCATTATACGTGCATAGTTCATACTGAGAATCACACATACGTACGTGAAAAGCTCCAGAATTTATAAGTTTGATGTGTTTTATTGATTATCATTCATCTCTTTTGGCAGAGAGGAGATTGAAGTGTGGAAATTAGGATTTGACACTCATCTAGATGAACATCTTATCAACTCAACTCAACTCAGCAGAATGCATACTGTGGCAAGCGACTTGTTATGATTTAACCAACATCCAGTTGGTTTGAGTCCTGCATTTTCTTCTTCTTCATATAAATCTAGTGATGAAAAAGGCGTAGTTTTCATAGTAATTCTATATATATATATATGATGTAATGATATGATGTTCTGCTTCATGATACTCTATTTCTATGTGGATGAGTTTCATTCTCTCTCATTGAGATTGGGACTGAAGTGTTCACCATCAATGGAAAGCTTTGAACGAATAACCAACTCCTATATCTCATTCTTCTTTCAAGGGAAGAACATAAAAGAAGATGCTGGTTTCTATTCTGAAAGGG
mRNA sequence
ATGAAAAGGGTTTCAGATTTTCCCCCATTTCCTGTTCTAAGAAGGAGGCTTCCCTTTGATTTTGTCGGCACTCCAATGGCGGATTTCACTTCTTCCTCGCTCAATGCTCTTTCTCCTCCCTCCGATGATGCTTTTGAAGACGACGCTTGCTGTATTTGCCTCGATCCTTTTACCTCCCACGATCCTCCCTCTGTCTCAACGAAGCAACGAGTGCCCAATCTGTTGCCAGTTGCTAGTGTTGAGGGATCCTGTTGGGAGCTTCTAGCAGCCATTGCTAATGAAAAGCTTTTGAAGTCTAGAAGCTTGTCTTCTGTTGCATCCACTTCTTTGCGTTTCCACGAAAACTTCGATGTCGACCATGACTCCTCTCGTTCAGATGACTCTGACTTTGATGACCTGATTATGCAGCATCTTGCTGCTGCAGCTAGCCGAGCTCGGTATGTTCATAGAAGGGAGAGGCAAAGACAATTTGGACTTGGACCTTCACAAGGTGCCTCTGCATGTCCAGAAGAGGTTCCAGTGCTAATATGCCCATTGTCACCTAGATTTCAAGATGCTTCTCTAAGTTCACCTAATAGTGATTCACCATCTCCTGGTTCCCCTTTGTCGTCTGGTGGTCGAACCGGAATTAGTAAAATCTCGCCTAGGGTTTTACTGACCGAGACATCGTCGGGTAGTCAACAGAAAACAAACCAATCTGAGGGGCTTTCTTTCCCAGATTCCATCAAATCCAAATGGTCTGCTACTTCTGCAAAGTACAAGGAGTCAATATGGCGAAGCACTCAAGGTATTAAGGAGAAACTGCTTGCTCGTAACAGCTCCGTGAAGGAGCTAAGCCGAGGAGTGAAGCGTGAAGTAAGTGCTGGGATTGCTGGTGTTGCTCGAATGATCGATCGCCTAGATTTGTCTTCAAAAAGGAATGCTGCTTCTGTTTCCTTTTTCAGCTGCAGTGGAGGTACATCAAACTCCATGAAAGGAAAGAACGTAGTAATGCAAGAAAGTGGTGTCACAGATGGTTCAGTAAAAAATGACAGAATATGTACTGGTTCACCCTCACATGTTTCCCCTACGGTTCCAGGCTCCGTCGATGATTCTCTAGCTCAGAGAGGAGATTGAAGTGTGGAAATTAGGATTTGACACTCATCTAGATGAACATCTTATCAACTCAACTCAACTCAGCAGAATGCATACTGTGGCAAGCGACTTGTTATGATTTAACCAACATCCAGTTGGTTTGAGTCCTGCATTTTCTTCTTCTTCATATAAATCTAGTGATGAAAAAGGCGTAGTTTTCATAGTAATTCTATATATATATATATGATGTAATGATATGATGTTCTGCTTCATGATACTCTATTTCTATGTGGATGAGTTTCATTCTCTCTCATTGAGATTGGGACTGAAGTGTTCACCATCAATGGAAAGCTTTGAACGAATAACCAACTCCTATATCTCATTCTTCTTTCAAGGGAAGAACATAAAAGAAGATGCTGGTTTCTATTCTGAAAGGG
Coding sequence (CDS)
ATGAAAAGGGTTTCAGATTTTCCCCCATTTCCTGTTCTAAGAAGGAGGCTTCCCTTTGATTTTGTCGGCACTCCAATGGCGGATTTCACTTCTTCCTCGCTCAATGCTCTTTCTCCTCCCTCCGATGATGCTTTTGAAGACGACGCTTGCTGTATTTGCCTCGATCCTTTTACCTCCCACGATCCTCCCTCTGTCTCAACGAAGCAACGAGTGCCCAATCTGTTGCCAGTTGCTAGTGTTGAGGGATCCTGTTGGGAGCTTCTAGCAGCCATTGCTAATGAAAAGCTTTTGAAGTCTAGAAGCTTGTCTTCTGTTGCATCCACTTCTTTGCGTTTCCACGAAAACTTCGATGTCGACCATGACTCCTCTCGTTCAGATGACTCTGACTTTGATGACCTGATTATGCAGCATCTTGCTGCTGCAGCTAGCCGAGCTCGGTATGTTCATAGAAGGGAGAGGCAAAGACAATTTGGACTTGGACCTTCACAAGGTGCCTCTGCATGTCCAGAAGAGGTTCCAGTGCTAATATGCCCATTGTCACCTAGATTTCAAGATGCTTCTCTAAGTTCACCTAATAGTGATTCACCATCTCCTGGTTCCCCTTTGTCGTCTGGTGGTCGAACCGGAATTAGTAAAATCTCGCCTAGGGTTTTACTGACCGAGACATCGTCGGGTAGTCAACAGAAAACAAACCAATCTGAGGGGCTTTCTTTCCCAGATTCCATCAAATCCAAATGGTCTGCTACTTCTGCAAAGTACAAGGAGTCAATATGGCGAAGCACTCAAGGTATTAAGGAGAAACTGCTTGCTCGTAACAGCTCCGTGAAGGAGCTAAGCCGAGGAGTGAAGCGTGAAGTAAGTGCTGGGATTGCTGGTGTTGCTCGAATGATCGATCGCCTAGATTTGTCTTCAAAAAGGAATGCTGCTTCTGTTTCCTTTTTCAGCTGCAGTGGAGGTACATCAAACTCCATGAAAGGAAAGAACGTAGTAATGCAAGAAAGTGGTGTCACAGATGGTTCAGTAAAAAATGACAGAATATGTACTGGTTCACCCTCACATGTTTCCCCTACGGTTCCAGGCTCCGTCGATGATTCTCTAGCTCAGAGAGGAGATTGA
Protein sequence
MKRVSDFPPFPVLRRRLPFDFVGTPMADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSVSTKQRVPNLLPVASVEGSCWELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDSDFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASLSSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNAASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQRGD
Homology
BLAST of CmoCh17G002510 vs. ExPASy Swiss-Prot
Match:
Q4TU14 (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 SV=1)
HSP 1 Score: 156.8 bits (395), Expect = 4.9e-37
Identity = 137/345 (39.71%), Postives = 186/345 (53.91%), Query Frame = 0
Query: 25 PMADFTSSSLNALSPPSDDAFE-DDACCICLDPFTSHDPPSVSTKQRVPNLLPVASVEGS 84
P +SSS +AL SDD DDAC ICL+PFT DP +V++ + +L + +E S
Sbjct: 20 PAIGSSSSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCI--IEWS 79
Query: 85 --------CW-----------ELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSR 144
CW ELLAA+ E+LLK+R++SS + S+ H + D +
Sbjct: 80 QRSKECPICWQLFVLRDPASQELLAAVEKERLLKTRNISSSSPISIH-HSHDDFHSEEEE 139
Query: 145 SDDSDFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSP--- 204
S S FD+ ++HL AA R + RR+ Q L S + V + LS
Sbjct: 140 SQFSSFDEQFLRHLTEAAHRRCLLRRRDGQISSSLVSSSDPTTIHPTDLVNLYRLSAISH 199
Query: 205 -RFQDAS-LSSPNSDSPSPGSPLSS--GGRTGISKISPRVLLTETSSGSQQKTNQSEGLS 264
Q+++ SP S +PSP S SS S+ISP + S S Q E S
Sbjct: 200 VEHQNSNPCPSPGSMTPSPVSGHSSIPADSNNGSRISP----GPSPSRSSQSPKSPEASS 259
Query: 265 FPDSIKSKWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMI 324
P++IKSK +A SAKYKESI +S QG+KEKLLARN+SVKELS+GV+RE++AGIAGVARMI
Sbjct: 260 LPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMI 319
Query: 325 DRLDLSSKRNAASV---SFFSCSGGTSNSMKGKNVVMQESGVTDG 340
+R+D SSKR S + + + G + S KGK V +G
Sbjct: 320 ERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNG 357
BLAST of CmoCh17G002510 vs. ExPASy Swiss-Prot
Match:
Q9ZT42 (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1)
HSP 1 Score: 95.9 bits (237), Expect = 1.0e-18
Identity = 107/351 (30.48%), Postives = 168/351 (47.86%), Query Frame = 0
Query: 47 DDACCICLDPFTSHDPPSVSTKQRVPNLLPV------ASVEGSCW-----------ELLA 106
DDAC ICL+ F DP ++++ + +L + +S CW ELL
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLE 89
Query: 107 AIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDSDFDDLIMQHLAAAAS--RARY 166
A+ E+ + + +F++ H D+++ ++ I+QHLAAAA+ RAR+
Sbjct: 90 AVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARH 149
Query: 167 VHRRERQR---------QFGLGPSQGASACPEEVPVLICPLSPRFQDAS----------- 226
RRE R QF + SQ ++ P P + P SP +D S
Sbjct: 150 GVRREGHRSRSSSQGHQQFMVFSSQPNASSPPPHPPM--PSSPSQRDESDTVSNLPHNAL 209
Query: 227 ---LSSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKS 286
N+ P+ P S P L ++S Q + SE SF +S+KS
Sbjct: 210 GEGSHQSNTQPPTSSHPRQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKS 269
Query: 287 KWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDL-- 346
+ +A S +YKESI ++T+ K++L +RN+S+ +L VKREVSAGIA V+RM++RL+
Sbjct: 270 RLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRE 329
Query: 347 SSKRNAASVSFFSCS-GGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPS 353
+S+ + ASVS S + +N+ + E V + VK + TGS S
Sbjct: 330 NSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVK-ETCATGSGS 374
BLAST of CmoCh17G002510 vs. ExPASy TrEMBL
Match:
A0A6J1H5S5 (E3 ubiquitin-protein ligase RHF1A isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460372 PE=4 SV=1)
HSP 1 Score: 606.3 bits (1562), Expect = 8.6e-170
Identity = 327/363 (90.08%), Postives = 334/363 (92.01%), Query Frame = 0
Query: 26 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSVST---KQRVPNLLPVASVEG 85
MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPS+++ + + +L +
Sbjct: 1 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSITSCKHEYHLQCILDWSQRSN 60
Query: 86 SC--------------WELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDS 145
C ELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDS
Sbjct: 61 ECPICCQLLVLRDPVGQELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDS 120
Query: 146 DFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL 205
DFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL
Sbjct: 121 DFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL 180
Query: 206 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA 265
SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA
Sbjct: 181 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA 240
Query: 266 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 325
TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA
Sbjct: 241 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 300
Query: 326 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ 372
ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ
Sbjct: 301 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ 360
BLAST of CmoCh17G002510 vs. ExPASy TrEMBL
Match:
A0A6J1L048 (E3 ubiquitin-protein ligase RHF1A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499166 PE=4 SV=1)
HSP 1 Score: 589.7 bits (1519), Expect = 8.3e-165
Identity = 318/363 (87.60%), Postives = 329/363 (90.63%), Query Frame = 0
Query: 26 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSVST---KQRVPNLLPVASVEG 85
MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPS+++ + + +L +
Sbjct: 1 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSITSCKHEYHLQCILDWSQRSN 60
Query: 86 SC--------------WELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDS 145
C ELLAAIA+EKLLKSRSLSSVASTSLRFHENFDVDHDSS SDDS
Sbjct: 61 ECPICCQLLVLRDPVGQELLAAIASEKLLKSRSLSSVASTSLRFHENFDVDHDSSHSDDS 120
Query: 146 DFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL 205
DFDDLIMQHLAAAASRARYVHRRERQR FGLGPSQG SACPEEVPVLICPLSPRFQDA+L
Sbjct: 121 DFDDLIMQHLAAAASRARYVHRRERQRHFGLGPSQGVSACPEEVPVLICPLSPRFQDATL 180
Query: 206 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA 265
SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTET SGSQQKTNQ EGLSFPDSIKSKWSA
Sbjct: 181 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETLSGSQQKTNQPEGLSFPDSIKSKWSA 240
Query: 266 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 325
TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA
Sbjct: 241 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 300
Query: 326 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ 372
ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSV+DSLAQ
Sbjct: 301 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVNDSLAQ 360
BLAST of CmoCh17G002510 vs. ExPASy TrEMBL
Match:
A0A6J1H7X0 (E3 ubiquitin-protein ligase RHF1A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460372 PE=4 SV=1)
HSP 1 Score: 567.0 bits (1460), Expect = 5.8e-158
Identity = 311/363 (85.67%), Postives = 318/363 (87.60%), Query Frame = 0
Query: 26 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSVST---KQRVPNLLPVASVEG 85
MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPS+++ + + +L +
Sbjct: 1 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSITSCKHEYHLQCILDWSQRSN 60
Query: 86 SC--------------WELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDS 145
C ELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDH
Sbjct: 61 ECPICCQLLVLRDPVGQELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDH-------- 120
Query: 146 DFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL 205
HLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL
Sbjct: 121 --------HLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL 180
Query: 206 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA 265
SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA
Sbjct: 181 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA 240
Query: 266 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 325
TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA
Sbjct: 241 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 300
Query: 326 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ 372
ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ
Sbjct: 301 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ 347
BLAST of CmoCh17G002510 vs. ExPASy TrEMBL
Match:
A0A6J1KXS7 (E3 ubiquitin-protein ligase RHF1A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499166 PE=4 SV=1)
HSP 1 Score: 552.4 bits (1422), Expect = 1.5e-153
Identity = 303/363 (83.47%), Postives = 314/363 (86.50%), Query Frame = 0
Query: 26 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSVST---KQRVPNLLPVASVEG 85
MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPS+++ + + +L +
Sbjct: 1 MADFTSSSLNALSPPSDDAFEDDACCICLDPFTSHDPPSITSCKHEYHLQCILDWSQRSN 60
Query: 86 SC--------------WELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDS 145
C ELLAAIA+EKLLKSRSLSSVASTSLRFHENFDVDH
Sbjct: 61 ECPICCQLLVLRDPVGQELLAAIASEKLLKSRSLSSVASTSLRFHENFDVDH-------- 120
Query: 146 DFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSPRFQDASL 205
HLAAAASRARYVHRRERQR FGLGPSQG SACPEEVPVLICPLSPRFQDA+L
Sbjct: 121 --------HLAAAASRARYVHRRERQRHFGLGPSQGVSACPEEVPVLICPLSPRFQDATL 180
Query: 206 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKSKWSA 265
SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTET SGSQQKTNQ EGLSFPDSIKSKWSA
Sbjct: 181 SSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETLSGSQQKTNQPEGLSFPDSIKSKWSA 240
Query: 266 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 325
TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA
Sbjct: 241 TSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDLSSKRNA 300
Query: 326 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVDDSLAQ 372
ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSV+DSLAQ
Sbjct: 301 ASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPSHVSPTVPGSVNDSLAQ 347
BLAST of CmoCh17G002510 vs. ExPASy TrEMBL
Match:
A0A1S3C9D8 (E3 ubiquitin-protein ligase RHF1A OS=Cucumis melo OX=3656 GN=LOC103497932 PE=4 SV=1)
HSP 1 Score: 454.1 bits (1167), Expect = 5.5e-124
Identity = 270/379 (71.24%), Postives = 297/379 (78.36%), Query Frame = 0
Query: 26 MADFTSS---------------SLNALSPPSDDAFEDDACCICLDPFTSHDPPSVST--- 85
MA+FTSS S +A + SDD F DDACCICLDPFTS DP ++++
Sbjct: 1 MANFTSSSSPSPSSVSLNPNAVSASAAAAASDDDF-DDACCICLDPFTSDDPATITSCKH 60
Query: 86 KQRVPNLLPVASVEGSC--------------WELLAAIANEKLLKSRSLSSVASTSLRFH 145
+ + +L + C ELLAA+A+E+LLKSRSLSS ASTSLRFH
Sbjct: 61 EYHLQCILDWSQRSDECPICCQLLALKDPVGQELLAAMASERLLKSRSLSSAASTSLRFH 120
Query: 146 ENFDVDHDSSRSDDSDFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVP 205
ENFD DHDS SDDSDFDDLIMQHLAAAASRARYVHRRERQR FG+GPSQ ASACPE
Sbjct: 121 ENFDFDHDSVHSDDSDFDDLIMQHLAAAASRARYVHRRERQRHFGVGPSQVASACPE--- 180
Query: 206 VLICPLSPRFQDASLSSPNSDSPSPGSPLSSGGRTGISKISPRV-LLTETSSGSQQKTNQ 265
P+SPRFQDA+L+SPNSDSPSPGSP+ S G+TGI+KISP V LL +T SGSQQKTNQ
Sbjct: 181 ---VPMSPRFQDATLTSPNSDSPSPGSPMPSVGQTGINKISPSVILLPDTPSGSQQKTNQ 240
Query: 266 SEGLSFPDSIKSKWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAG 325
SEGLSF DSIKSKWSATSAKYKESI RSTQGIKEKLLARNSSVKELS+GVKREVSAGIAG
Sbjct: 241 SEGLSFQDSIKSKWSATSAKYKESILRSTQGIKEKLLARNSSVKELSKGVKREVSAGIAG 300
Query: 326 VARMIDRLDLSSKRNAASVSFFSCSGGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPS 372
VARMIDRLDL+SKRN SVSFFSC GGTSNS+KGKNVV QES TDGSVK +RICTGSPS
Sbjct: 301 VARMIDRLDLTSKRNTGSVSFFSC-GGTSNSLKGKNVV-QESAGTDGSVKINRICTGSPS 360
BLAST of CmoCh17G002510 vs. TAIR 10
Match:
AT4G14220.1 (RING-H2 group F1A )
HSP 1 Score: 156.8 bits (395), Expect = 3.5e-38
Identity = 137/345 (39.71%), Postives = 186/345 (53.91%), Query Frame = 0
Query: 25 PMADFTSSSLNALSPPSDDAFE-DDACCICLDPFTSHDPPSVSTKQRVPNLLPVASVEGS 84
P +SSS +AL SDD DDAC ICL+PFT DP +V++ + +L + +E S
Sbjct: 20 PAIGSSSSSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCI--IEWS 79
Query: 85 --------CW-----------ELLAAIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSR 144
CW ELLAA+ E+LLK+R++SS + S+ H + D +
Sbjct: 80 QRSKECPICWQLFVLRDPASQELLAAVEKERLLKTRNISSSSPISIH-HSHDDFHSEEEE 139
Query: 145 SDDSDFDDLIMQHLAAAASRARYVHRRERQRQFGLGPSQGASACPEEVPVLICPLSP--- 204
S S FD+ ++HL AA R + RR+ Q L S + V + LS
Sbjct: 140 SQFSSFDEQFLRHLTEAAHRRCLLRRRDGQISSSLVSSSDPTTIHPTDLVNLYRLSAISH 199
Query: 205 -RFQDAS-LSSPNSDSPSPGSPLSS--GGRTGISKISPRVLLTETSSGSQQKTNQSEGLS 264
Q+++ SP S +PSP S SS S+ISP + S S Q E S
Sbjct: 200 VEHQNSNPCPSPGSMTPSPVSGHSSIPADSNNGSRISP----GPSPSRSSQSPKSPEASS 259
Query: 265 FPDSIKSKWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMI 324
P++IKSK +A SAKYKESI +S QG+KEKLLARN+SVKELS+GV+RE++AGIAGVARMI
Sbjct: 260 LPEAIKSKLAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQREMNAGIAGVARMI 319
Query: 325 DRLDLSSKRNAASV---SFFSCSGGTSNSMKGKNVVMQESGVTDG 340
+R+D SSKR S + + + G + S KGK V +G
Sbjct: 320 ERMDFSSKRFGGSAHVSTSTATASGFNFSFKGKRVEANSKSNNNG 357
BLAST of CmoCh17G002510 vs. TAIR 10
Match:
AT5G22000.2 (RING-H2 group F2A )
HSP 1 Score: 95.9 bits (237), Expect = 7.3e-20
Identity = 107/351 (30.48%), Postives = 168/351 (47.86%), Query Frame = 0
Query: 47 DDACCICLDPFTSHDPPSVSTKQRVPNLLPV------ASVEGSCW-----------ELLA 106
DDAC ICL+ F DP ++++ + +L + +S CW ELL
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLE 89
Query: 107 AIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDSDFDDLIMQHLAAAAS--RARY 166
A+ E+ + + +F++ H D+++ ++ I+QHLAAAA+ RAR+
Sbjct: 90 AVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARH 149
Query: 167 VHRRERQR---------QFGLGPSQGASACPEEVPVLICPLSPRFQDAS----------- 226
RRE R QF + SQ ++ P P + P SP +D S
Sbjct: 150 GVRREGHRSRSSSQGHQQFMVFSSQPNASSPPPHPPM--PSSPSQRDESDTVSNLPHNAL 209
Query: 227 ---LSSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKS 286
N+ P+ P S P L ++S Q + SE SF +S+KS
Sbjct: 210 GEGSHQSNTQPPTSSHPRQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKS 269
Query: 287 KWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDL-- 346
+ +A S +YKESI ++T+ K++L +RN+S+ +L VKREVSAGIA V+RM++RL+
Sbjct: 270 RLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRE 329
Query: 347 SSKRNAASVSFFSCS-GGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPS 353
+S+ + ASVS S + +N+ + E V + VK + TGS S
Sbjct: 330 NSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVK-ETCATGSGS 374
BLAST of CmoCh17G002510 vs. TAIR 10
Match:
AT5G22000.1 (RING-H2 group F2A )
HSP 1 Score: 95.9 bits (237), Expect = 7.3e-20
Identity = 107/351 (30.48%), Postives = 168/351 (47.86%), Query Frame = 0
Query: 47 DDACCICLDPFTSHDPPSVSTKQRVPNLLPV------ASVEGSCW-----------ELLA 106
DDAC ICL+ F DP ++++ + +L + +S CW ELL
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLE 89
Query: 107 AIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDSDFDDLIMQHLAAAAS--RARY 166
A+ E+ + + +F++ H D+++ ++ I+QHLAAAA+ RAR+
Sbjct: 90 AVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARH 149
Query: 167 VHRRERQR---------QFGLGPSQGASACPEEVPVLICPLSPRFQDAS----------- 226
RRE R QF + SQ ++ P P + P SP +D S
Sbjct: 150 GVRREGHRSRSSSQGHQQFMVFSSQPNASSPPPHPPM--PSSPSQRDESDTVSNLPHNAL 209
Query: 227 ---LSSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKS 286
N+ P+ P S P L ++S Q + SE SF +S+KS
Sbjct: 210 GEGSHQSNTQPPTSSHPRQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKS 269
Query: 287 KWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDL-- 346
+ +A S +YKESI ++T+ K++L +RN+S+ +L VKREVSAGIA V+RM++RL+
Sbjct: 270 RLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRE 329
Query: 347 SSKRNAASVSFFSCS-GGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPS 353
+S+ + ASVS S + +N+ + E V + VK + TGS S
Sbjct: 330 NSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVK-ETCATGSGS 374
BLAST of CmoCh17G002510 vs. TAIR 10
Match:
AT5G22000.3 (RING-H2 group F2A )
HSP 1 Score: 95.9 bits (237), Expect = 7.3e-20
Identity = 107/351 (30.48%), Postives = 168/351 (47.86%), Query Frame = 0
Query: 47 DDACCICLDPFTSHDPPSVSTKQRVPNLLPV------ASVEGSCW-----------ELLA 106
DDAC ICL+ F DP ++++ + +L + +S CW ELL
Sbjct: 30 DDACSICLESFCESDPSTLTSCKHEYHLQCILEWCQRSSQCPMCWQSISLKDPTSQELLE 89
Query: 107 AIANEKLLKSRSLSSVASTSLRFHENFDVDHDSSRSDDSDFDDLIMQHLAAAAS--RARY 166
A+ E+ + + +F++ H D+++ ++ I+QHLAAAA+ RAR+
Sbjct: 90 AVEQERNFRFNPTRNATIFRHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARH 149
Query: 167 VHRRERQR---------QFGLGPSQGASACPEEVPVLICPLSPRFQDAS----------- 226
RRE R QF + SQ ++ P P + P SP +D S
Sbjct: 150 GVRREGHRSRSSSQGHQQFMVFSSQPNASSPPPHPPM--PSSPSQRDESDTVSNLPHNAL 209
Query: 227 ---LSSPNSDSPSPGSPLSSGGRTGISKISPRVLLTETSSGSQQKTNQSEGLSFPDSIKS 286
N+ P+ P S P L ++S Q + SE SF +S+KS
Sbjct: 210 GEGSHQSNTQPPTSSHPRQVSPSASDSNSRP---LNQSSPSEQDRAGPSELQSFSESLKS 269
Query: 287 KWSATSAKYKESIWRSTQGIKEKLLARNSSVKELSRGVKREVSAGIAGVARMIDRLDL-- 346
+ +A S +YKESI ++T+ K++L +RN+S+ +L VKREVSAGIA V+RM++RL+
Sbjct: 270 RLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRE 329
Query: 347 SSKRNAASVSFFSCS-GGTSNSMKGKNVVMQESGVTDGSVKNDRICTGSPS 353
+S+ + ASVS S + +N+ + E V + VK + TGS S
Sbjct: 330 NSRPSTASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVK-ETCATGSGS 374
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q4TU14 | 4.9e-37 | 39.71 | E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana OX=3702 GN=RHF1A PE=1 ... | [more] |
Q9ZT42 | 1.0e-18 | 30.48 | E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 ... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1H5S5 | 8.6e-170 | 90.08 | E3 ubiquitin-protein ligase RHF1A isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... | [more] |
A0A6J1L048 | 8.3e-165 | 87.60 | E3 ubiquitin-protein ligase RHF1A isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1... | [more] |
A0A6J1H7X0 | 5.8e-158 | 85.67 | E3 ubiquitin-protein ligase RHF1A isoform X2 OS=Cucurbita moschata OX=3662 GN=LO... | [more] |
A0A6J1KXS7 | 1.5e-153 | 83.47 | E3 ubiquitin-protein ligase RHF1A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... | [more] |
A0A1S3C9D8 | 5.5e-124 | 71.24 | E3 ubiquitin-protein ligase RHF1A OS=Cucumis melo OX=3656 GN=LOC103497932 PE=4 S... | [more] |