CmoCh17G002010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh17G002010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein TIFY 4B-like isoform X1
Location	Cmo_Chr17: 1185419 .. 1189477 (-)
RNA-Seq Expression	CmoCh17G002010
Synteny	CmoCh17G002010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCCGAGACGCCCTTTAATCAAGTTCACAACCACCCCCTTCTTCAATTCCCCTGATTCCGCCTCCAAAATTCCGCCGGTCGTTCTCCGATGATCGTCGCCGCCCTGATTTCCGTCTATTTCCGGTCTTGATTGCAGGTTTTAGGGCGGAGCGCCAACCGGTGTGTCGGTTCTCTGGGATTCTGCGGCAATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGGGAGGATTGTCGCAAATACCTAAAGGAAAAAGGTTTTTCCCTCTCTCTTCTTCGGTCTTGTAATTTCCATTTTTCTCTCTTTCTTCCCACCATTTTTTCCGGCGCCCCCAAATCACGGAAGCTTCCATTTCTCTTTCCTTTTCTTTTCTTTTCCTTTCTTTTCTTTTCTCCCCGCTCCCGCCCTAGCGGGTTCGGAGGAATGATTGCGATTTTAATTTAATTTATTTTTAATTTGTTGCTTGTCTGCTTACACGTGCTGGGTCAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAATGCTCTCAGGAAGGTCGTCGTTTTGCCTCGGGTGAGTTTTGGTTTAACAATTTTGCTTATTGGAGGGTTTTCTTTGATCAATATTTTTTTTCCCGTTTCTTTCTGAGTATATTCATGAATCTTTGTCATAATCATTAGTGCTGTTATTGAATGATGTATGTGTTTAGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCAGCTGAGCCAGACAACAATGTCACCAGTCCCAGGTTCTGCTACTTCTTCACTGTGATGTGGATTTGTGGATCATATATGTGTAGCAATTCCTATGCCTGGAAATTGATGTATGTCATGCTGTGTTTCATCTTCTGTCTTGGAAGCTTGTGCGGATTTGCTGTTCTTAAACTCTAAAATAGAAGAGTTACTGAGTATATGTGGTTTCAAAAGTCTTGAATGAACTATATATCCTTGTTTTGGCATTGATCAGTACACTACCCTGCACCCTAAACAAAATTTTGAAGTTTAAAATGTTTGCAGAAGCAAAAAACAGTGAAGCCATGTGGAAGTAATCTGATATCTTTATTCTATTATGTGCTGGTCAAATTAGAGTCTTGCTGGAAACAAGTATCTTGAACTATCATGTGAAGTTTGTTATCTTGTGAAGCTATAGGTTTGGTCATATATTTTGAAATGCAAACATGTGCATAAGGTTGTGGGCACTTCTTGCCTCCTTTCCTTTCTTAGGTCACTGTGAGATCCCACGTTGGTTGGAGAGGGTAACGAAGCATTACTTATAAGGGTGTGGAAATCTCTCCCTAGCAAATGCGTTTTAAAAACCTTGAGGGGAAGCCCAAAAGGGAAAACTCAAAGAGGACAATATCTGCTAGCGGTAGGCTTGAGTTGTTACAATCAGAGTCCTGCATGGTTGACCCATTGGCATCACTTGATGTATCTATGCTTTAATGGTACTTGAGCTGAAACTCGATGGCGTACTTGTTGAATTTTGTTTGTGACCGTGTATCATCGAAAATGACAATAATTTGTACTAACTGAGACGAGATGGTAACAAATGTTTTAATGGTTGGCAGAAATCAATACGAAACAAATGGAGTGGACGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGTTTAAACGCTATCTCTTTTTTGGATTCCTGAAGAATACTTTTCATGGACATGTCTTTTTCGGCCCCTCCTGTTCAACATGTTATAATCATCTATGGATTTGCAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGGTTAGTCTGTGGGTTATATCACTTTTGTTGCAAAATCACTTTTCGTGCTCTGAAAACTTATCCATAGCCTCAACTCCACTTGGCAACTTTTTCTTGGACCATATTTCTGGTGGGTAAATTTGGCAACCACGGGTCTGAAATCTACATTTTGTGGGTAATAGATGGGTCTTGATTGTGACTGTTTTCACTTTCTCCATTAAGCTACACATTTTTTCACTTAGAACTGCATCTTAGAGTTTAGAAGGCTTTCAATTTTGTACTGTGAGATCTCACCTCGGTTGGAGAGGGGAACAAAGTATTCGCTATAAGGGTGTGAAAACCTCTTCCTAGCAGAAGGGTTTTAAAACTTTGAGGGGAAGCCCAGAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGTGGTGGGCTTGAGTTGGTACAAATCGTATTAGAGCCAGATACCGAACGGTGTGCCAGCAAGGACCTTGGGCCCCCAAGGGAGGTGAATTGTGAGATTCCACCTCAGTTGGAGAGGGGAACGAAACGTTCCTTATAAGAGGTGTGGAAACCTCTCTCTAGTAGACGCGTTTTAAAATCGTGAGGCTAACGGCGATATATAACGAATCAAAGCAGACAATATCTGCAAGCGGTGGGCTTGGGCTGCTACATGTACTCACAATAAAAAATGAAGTTTAGTCATGGTGTTTGTTATTGCCAATTTGAGCATAGCTTAATGAATAAATATACTAATTACCATCTCAAAGGATGATGACTCGAACCTCCAACTCCACAATTGTTGAACTAATAAAAAGGTAATGGCGGTAGCTATTGAAGTGACAGATTGTATTCTGACTTGACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGGTAATCGTTCTTTTTGCTTGCAATTTTGTTTTTTGCATTGTGAAAATATAAACTCTGCATTTCTCATATTTGTTAGAATTGTAAAGAATTCTGTACTTCGTCCAAAAATTTGTTGTGATAATTTGTATAAATGTTCAACTATAACCTTTAGTCTCCATGACGTTTCTTTTCACCCCTTGCCCATGTAAATAACTCACAACTTTCCAAGAAACAGCTGATCTAATCAATAGTTTTTCATAAAAACTGTGGAATTTCATATTAGATGTCGAGGGTCAGGCGAGTCGAAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTACCTTCGACTAAGTTTTTTTTTCAGTTACAAGTCCATAATGATGACGTCATGCATGTAGATAACCTTTTGTCGTCTCGTATCTCATTTCGTTCATTTCTCTCCTATCTTTGTGGTTCTGTTTCTGCAAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCATATGAGGACGCACATACCCAATAAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAGCTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGGTAGAGCTATAGAGCTTTTATATTAGCAGTCAACTTTTTACTCACATTTACATGCATTTTGATTACTCATTAAAACTGGTATTAATCGACTGATTGCTCATTGTTCCATCAAATCACTTTCTCAACTTAGCTGTCTATAAATTTGCCAGCATTTTCCAAGAGATTTGAATTTGAGCGTCTCACTTAGCTGATGAATGATAGAATCTGGTTATAAACACTGTTAAAAGAACATAGAGATAATTAAAAGATTGTCTTATGGTATAAAGCTGGGAGCCGCTTTTCTGCAGATATCCAGGAGTGCTGAGTTCGACGTCGTTGATGGCATGCTACACAAAGGATCATCCTTGTGA

mRNA sequence

TTGCCGAGACGCCCTTTAATCAAGTTCACAACCACCCCCTTCTTCAATTCCCCTGATTCCGCCTCCAAAATTCCGCCGGTCGTTCTCCGATGATCGTCGCCGCCCTGATTTCCGTCTATTTCCGGTCTTGATTGCAGGTTTTAGGGCGGAGCGCCAACCGGTGTGTCGGTTCTCTGGGATTCTGCGGCAATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGGGAGGATTGTCGCAAATACCTAAAGGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAATGCTCTCAGGAAGGTCGTCGTTTTGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGACGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTCGAGGGTCAGGCGAGTCGAAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTACCTTCGACTAATCCATAATGATGACGTCATGCATGTAGATAACCTTTTGTCGTCTCGTATCTCATTTCGTTCATTTCTCTCCTATCTTTGTGGTTCTGTTTCTGCAAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCATATGAGGACGCACATACCCAATAAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAGCTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATCTGGGAGCCGCTTTTCTGCAGATATCCAGGAGTGCTGAGTTCGACGTCGTTGATGGCATGCTACACAAAGGATCATCCTTGTGA

Coding sequence (CDS)

ATGAGTGCGGGCGCGGCGACGTTCCCGTCTATACTCGACAAACCCCTCAACCAATTGACGGAGGATGACATTTCGCAGCTCACTCGGGAGGATTGTCGCAAATACCTAAAGGAAAAAGGAATGCGGCGGCCGTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCACTGCTTGAACCCTGTGATGATTCCGGCGCCAATGCTCTCAGGAAGGTCGTCGTTTTGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGTTTACAATGTCAGTTGATGAATCTGCGTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCAGCTGAGCCAGACAACAATGTCACCAGTCCCAGAAATCAATACGAAACAAATGGAGTGGACGGCCAAATGACAATTTTCTATTGTGGCAAAGTGAATGTGTATGATGGAGTTCCACCGGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATGTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGCATGTCAGTCTCCACCACGACCTTTGCAGACTTGCAGTGACAAAGATGACTTTTTTCCTCCTAGTGCTACCATGTATCGAAATGTGCATACAGAGAAGATGGTCGAGCACCCTCAGCAGCAGCAGCAGCATGTAAAAGGAACCAGTACTCGAGATTCTGATGTCGAGGGTCAGGCGAGTCGAAAAGTTTCATTACAGAGATATCTTGAAAAGCGAAAAGACAGGTACCTTCGACTAATCCATAATGATGACGTCATGCATGTAGATAACCTTTTGTCGTCTCGTATCTCATTTCGTTCATTTCTCTCCTATCTTTGTGGTTCTGTTTCTGCAAGGGGAAGGTTAAAGAACAAGAAAAATCCAGAATTGTCTTCTTCTAGCCTGGAAGGTTATATGAACCATCATATGAGGACGCACATACCCAATAAGAATTTAGGTCAGTTTGCGACAAGCTCTTTATCCCCTACTGGAGTAGCTAAAGCTTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATCTGGGAGCCGCTTTTCTGCAGATATCCAGGAGTGCTGAGTTCGACGTCGTTGATGGCATGCTACACAAAGGATCATCCTTGTGA

Protein sequence

MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPEDPPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRSFLSYLCGSVSARGRLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLACFPVDLNLGAAFLQISRSAEFDVVDGMLHKGSSL

Homology

[Close]

BLAST of CmoCh17G002010 vs. ExPASy Swiss-Prot
Match: Q8GY55 (Protein TIFY 4B OS=Arabidopsis thaliana OX=3702 GN=TIFY4B PE=1 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.1e-58
Identity = 164/380 (43.16%), Postives = 204/380 (53.68%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           M  G  T  SIL+KPL  LTE+DISQLTREDCRK+LKEKGMRRPSWNKSQAIQQV+SLKA
Sbjct: 1   MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLEPCDDSGANALRKVVVL-----PRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAK 120
           L EP DDSGA  LRK++V      PRV +   +   E     +  +  D+ A    ++ +
Sbjct: 61  LYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPR 120

Query: 121 STPEDPP-----AEPDNNVT---SPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAI 180
           S           A+ D++ T   SPR+  ETN V GQMTIFY GKVNVYDGVPP+KA +I
Sbjct: 121 SAEFSGSSGQFVADKDSHKTVSVSPRSPAETNAVVGQMTIFYSGKVNVYDGVPPEKARSI 180

Query: 181 MHLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQ 240
           MH AA+PI +P+N                         F  S  + + +  EKMVE PQ 
Sbjct: 181 MHFAANPIDLPEN-----------------------GIFASSRMISKPMSKEKMVELPQY 240

Query: 241 QQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRS 300
             +  K  ++RDSDVEGQA+RKVSLQRYLEKRKDR                   R S   
Sbjct: 241 GLE--KAPASRDSDVEGQANRKVSLQRYLEKRKDR-------------------RFS--- 300

Query: 301 FLSYLCGSVSARGRLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAK 360
                          K KK P ++SSSLE ++N   R       +    + +LS TG  +
Sbjct: 301 ---------------KTKKAPGVASSSLEMFLNRQPR-------MNAAYSQNLSGTGHCE 307

Query: 361 AFVGTADNQPKLACFPVDLN 368
               + +NQ K     VDLN
Sbjct: 361 ----SPENQTKSPNISVDLN 307

[Close]

BLAST of CmoCh17G002010 vs. ExPASy Swiss-Prot
Match: Q7XA73 (Protein TIFY 4A OS=Arabidopsis thaliana OX=3702 GN=TIFY4A PE=1 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.7e-52
Identity = 131/274 (47.81%), Postives = 166/274 (60.58%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           M  G +   SIL KPL  LTE+DISQLTREDCRK+LK+KGMRRPSWNKSQAIQQV+SLKA
Sbjct: 1   MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLEPCDDSGANALRKVVVL-----PRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAK 120
           L EP DDSGA   RK++V      PRV +   +   E     + +   D  A   +++ +
Sbjct: 61  LYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEACGRVSYPEDNGACHRMDSPR 120

Query: 121 STPEDP-----PAEPDNNVT--SPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIM 180
           S           +E D + T  SPR+  ET+ + GQMTIFY GKVNVYDG+PP+KA +IM
Sbjct: 121 SAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIM 180

Query: 181 HLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQ 240
           H AA+PI +P+N                         F  S  + + +  EKM+E PQ+ 
Sbjct: 181 HFAANPIDLPEN-----------------------GIFASSRMISKLISKEKMMELPQKG 240

Query: 241 QQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDR 263
            +  K  S+RDS +EGQA+RKVSLQRY EKRKDR
Sbjct: 241 LE--KANSSRDSGMEGQANRKVSLQRYREKRKDR 249

[Close]

BLAST of CmoCh17G002010 vs. ExPASy Swiss-Prot
Match: Q7XPM8 (Protein TIFY 3 OS=Oryza sativa subsp. japonica OX=39947 GN=TIFY3 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.1e-05
Identity = 39/119 (32.77%), Postives = 55/119 (46.22%), Query Frame = 0


Query: 144 QMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKD 203
           Q+TIFY G V VYD VPP+KA AIM +AA+              A + P  P    +   
Sbjct: 73  QLTIFYGGSVCVYDSVPPEKAQAIMLIAAAAAAAASATKSNAAIAVKPPVMPAANATQA- 132

Query: 204 DFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDR 263
                S  + R++  +       Q Q     +S      +   +R+ SLQR+LEKR+DR
Sbjct: 133 ---AVSPVLTRSLSLQSTSVATGQPQVAADPSSICKLQADLPIARRHSLQRFLEKRRDR 187

[Close]

BLAST of CmoCh17G002010 vs. ExPASy TrEMBL
Match: A0A6J1H2X2 (protein TIFY 4B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459923 PE=3 SV=1)

HSP 1 Score: 647.5 bits (1669), Expect = 3.6e-182
Identity = 330/368 (89.67%), Postives = 331/368 (89.95%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA
Sbjct: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120
           LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED
Sbjct: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120

Query: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180
           PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN
Sbjct: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180

Query: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS 240
           HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS
Sbjct: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS 240

Query: 241 DVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRSFLSYLCGSVSARG 300
           DVEGQASRKVSLQRYLEKRKD                                     RG
Sbjct: 241 DVEGQASRKVSLQRYLEKRKD-------------------------------------RG 300

Query: 301 RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLA 360
           RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLA
Sbjct: 301 RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLA 331

Query: 361 CFPVDLNL 369
           CFPVDLN+
Sbjct: 361 CFPVDLNV 331

[Close]

BLAST of CmoCh17G002010 vs. ExPASy TrEMBL
Match: A0A6J1H2N2 (protein TIFY 4B-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459923 PE=3 SV=1)

HSP 1 Score: 642.5 bits (1656), Expect = 1.2e-180
Identity = 328/368 (89.13%), Postives = 329/368 (89.40%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA
Sbjct: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120
           LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED
Sbjct: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120

Query: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180
           PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN
Sbjct: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180

Query: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS 240
           HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS
Sbjct: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS 240

Query: 241 DVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRSFLSYLCGSVSARG 300
           DVEGQASRKVSLQRYLEKRKD                                       
Sbjct: 241 DVEGQASRKVSLQRYLEKRKD--------------------------------------- 300

Query: 301 RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLA 360
           RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLA
Sbjct: 301 RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKLA 329

Query: 361 CFPVDLNL 369
           CFPVDLN+
Sbjct: 361 CFPVDLNV 329

[Close]

BLAST of CmoCh17G002010 vs. ExPASy TrEMBL
Match: A0A6J1KWM5 (protein TIFY 4B-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499380 PE=3 SV=1)

HSP 1 Score: 627.9 bits (1618), Expect = 2.9e-176
Identity = 324/369 (87.80%), Postives = 326/369 (88.35%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA
Sbjct: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120
           LLEPCDDSGA+ALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED
Sbjct: 61  LLEPCDDSGASALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120

Query: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180
           P AEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAA PIHVPQN
Sbjct: 121 PLAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAAGPIHVPQN 180

Query: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHP-QQQQQHVKGTSTRD 240
           HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHP QQQQQHVKGTSTRD
Sbjct: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQQHVKGTSTRD 240

Query: 241 SDVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRSFLSYLCGSVSAR 300
           SDVEGQASRKVSLQRYLEKRKD                                     R
Sbjct: 241 SDVEGQASRKVSLQRYLEKRKD-------------------------------------R 300

Query: 301 GRLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKL 360
           GRLKNKKNPELSSSSLEGYMNH MRTHI NKNLGQFATSSLSPTGV KAFVGTADNQPKL
Sbjct: 301 GRLKNKKNPELSSSSLEGYMNHQMRTHISNKNLGQFATSSLSPTGVTKAFVGTADNQPKL 332

Query: 361 ACFPVDLNL 369
           ACFPVDLN+
Sbjct: 361 ACFPVDLNV 332

[Close]

BLAST of CmoCh17G002010 vs. ExPASy TrEMBL
Match: A0A6J1L5S1 (protein TIFY 4B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499380 PE=3 SV=1)

HSP 1 Score: 622.9 bits (1605), Expect = 9.4e-175
Identity = 322/369 (87.26%), Postives = 324/369 (87.80%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA
Sbjct: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120
           LLEPCDDSGA+ALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED
Sbjct: 61  LLEPCDDSGASALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120

Query: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180
           P AEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAA PIHVPQN
Sbjct: 121 PLAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAAGPIHVPQN 180

Query: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHP-QQQQQHVKGTSTRD 240
           HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHP QQQQQHVKGTSTRD
Sbjct: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQQHVKGTSTRD 240

Query: 241 SDVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRSFLSYLCGSVSAR 300
           SDVEGQASRKVSLQRYLEKRKD                                      
Sbjct: 241 SDVEGQASRKVSLQRYLEKRKD-------------------------------------- 300

Query: 301 GRLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAKAFVGTADNQPKL 360
            RLKNKKNPELSSSSLEGYMNH MRTHI NKNLGQFATSSLSPTGV KAFVGTADNQPKL
Sbjct: 301 -RLKNKKNPELSSSSLEGYMNHQMRTHISNKNLGQFATSSLSPTGVTKAFVGTADNQPKL 330

Query: 361 ACFPVDLNL 369
           ACFPVDLN+
Sbjct: 361 ACFPVDLNV 330

[Close]

BLAST of CmoCh17G002010 vs. ExPASy TrEMBL
Match: A0A6J1H3X6 (protein TIFY 4B-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111459923 PE=3 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 5.9e-161
Identity = 295/332 (88.86%), Postives = 295/332 (88.86%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA
Sbjct: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60

Query: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120
           LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED
Sbjct: 61  LLEPCDDSGANALRKVVVLPRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAKSTPED 120

Query: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180
           PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN
Sbjct: 121 PPAEPDNNVTSPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHVPQN 180

Query: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS 240
           HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS
Sbjct: 181 HPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQQQHVKGTSTRDS 240

Query: 241 DVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRSFLSYLCGSVSARG 300
           DVEGQASRKVSLQRYLEKRKD                                     RG
Sbjct: 241 DVEGQASRKVSLQRYLEKRKD-------------------------------------RG 295

Query: 301 RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNL 333
           RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNL
Sbjct: 301 RLKNKKNPELSSSSLEGYMNHHMRTHIPNKNL 295

[Close]

BLAST of CmoCh17G002010 vs. TAIR 10
Match: AT4G14720.1 (TIFY domain/Divergent CCT motif family protein )

HSP 1 Score: 225.7 bits (574), Expect = 6.5e-59
Identity = 164/380 (43.16%), Postives = 204/380 (53.68%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           M  G  T  SIL+KPL  LTE+DISQLTREDCRK+LKEKGMRRPSWNKSQAIQQV+SLKA
Sbjct: 1   MDVGVTTAKSILEKPLKLLTEEDISQLTREDCRKFLKEKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLEPCDDSGANALRKVVVL-----PRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAK 120
           L EP DDSGA  LRK++V      PRV +   +   E     +  +  D+ A    ++ +
Sbjct: 61  LYEPGDDSGAGILRKILVSQPPNPPRVTTTLIEPRNELEACGRIPLQEDDGACHRRDSPR 120

Query: 121 STPEDPP-----AEPDNNVT---SPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAI 180
           S           A+ D++ T   SPR+  ETN V GQMTIFY GKVNVYDGVPP+KA +I
Sbjct: 121 SAEFSGSSGQFVADKDSHKTVSVSPRSPAETNAVVGQMTIFYSGKVNVYDGVPPEKARSI 180

Query: 181 MHLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQ 240
           MH AA+PI +P+N                         F  S  + + +  EKMVE PQ 
Sbjct: 181 MHFAANPIDLPEN-----------------------GIFASSRMISKPMSKEKMVELPQY 240

Query: 241 QQQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRYLRLIHNDDVMHVDNLLSSRISFRS 300
             +  K  ++RDSDVEGQA+RKVSLQRYLEKRKDR                   R S   
Sbjct: 241 GLE--KAPASRDSDVEGQANRKVSLQRYLEKRKDR-------------------RFS--- 300

Query: 301 FLSYLCGSVSARGRLKNKKNPELSSSSLEGYMNHHMRTHIPNKNLGQFATSSLSPTGVAK 360
                          K KK P ++SSSLE ++N   R       +    + +LS TG  +
Sbjct: 301 ---------------KTKKAPGVASSSLEMFLNRQPR-------MNAAYSQNLSGTGHCE 307

Query: 361 AFVGTADNQPKLACFPVDLN 368
               + +NQ K     VDLN
Sbjct: 361 ----SPENQTKSPNISVDLN 307

[Close]

BLAST of CmoCh17G002010 vs. TAIR 10
Match: AT4G14713.2 (TIFY domain/Divergent CCT motif family protein )

HSP 1 Score: 206.5 bits (524), Expect = 4.1e-53
Identity = 131/279 (46.95%), Postives = 169/279 (60.57%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           M  G +   SIL KPL  LTE+DISQLTREDCRK+LK+KGMRRPSWNKSQAIQQV+SLKA
Sbjct: 1   MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLEPCDDSGANALRKVVVL-----PRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAK 120
           L EP DDSGA   RK++V      PRV +   +   E     + +   D  A   +++ +
Sbjct: 61  LYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEACGRVSYPEDNGACHRMDSPR 120

Query: 121 STPEDP-----PAEPDNNVT--SPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIM 180
           S           +E D + T  SPR+  ET+ + GQMTIFY GKVNVYDG+PP+KA +IM
Sbjct: 121 SAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIM 180

Query: 181 HLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQ 240
           H AA+PI +P+N                         F  S  + + +  EKM+E PQ+ 
Sbjct: 181 HFAANPIDLPEN-----------------------GIFASSRMISKLISKEKMMELPQKG 240

Query: 241 QQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDRYLRLI 268
            +  K  S+RDS +EGQA+RKVSLQRY EKRKDR + ++
Sbjct: 241 LE--KANSSRDSGMEGQANRKVSLQRYREKRKDRCIYIL 254

[Close]

BLAST of CmoCh17G002010 vs. TAIR 10
Match: AT4G14713.1 (TIFY domain/Divergent CCT motif family protein )

HSP 1 Score: 205.7 bits (522), Expect = 6.9e-53
Identity = 131/274 (47.81%), Postives = 166/274 (60.58%), Query Frame = 0


Query: 1   MSAGAATFPSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKA 60
           M  G +   SIL KPL  LTE+DISQLTREDCRK+LK+KGMRRPSWNKSQAIQQV+SLKA
Sbjct: 1   MDVGVSPAKSILAKPLKLLTEEDISQLTREDCRKFLKDKGMRRPSWNKSQAIQQVLSLKA 60

Query: 61  LLEPCDDSGANALRKVVVL-----PRVNSNQGDSPKEPSDDAQFTMSVDESAYSNVETAK 120
           L EP DDSGA   RK++V      PRV +   +   E     + +   D  A   +++ +
Sbjct: 61  LYEPGDDSGAGIFRKILVSQPVNPPRVTTTLIEPSNELEACGRVSYPEDNGACHRMDSPR 120

Query: 121 STPEDP-----PAEPDNNVT--SPRNQYETNGVDGQMTIFYCGKVNVYDGVPPDKAWAIM 180
           S           +E D + T  SPR+  ET+ + GQMTIFY GKVNVYDG+PP+KA +IM
Sbjct: 121 SAEFSGGSGHFVSEKDGHKTTISPRSPAETSELVGQMTIFYSGKVNVYDGIPPEKARSIM 180

Query: 181 HLAASPIHVPQNHPLGGTAACQSPPRPLQTCSDKDDFFPPSATMYRNVHTEKMVEHPQQQ 240
           H AA+PI +P+N                         F  S  + + +  EKM+E PQ+ 
Sbjct: 181 HFAANPIDLPEN-----------------------GIFASSRMISKLISKEKMMELPQKG 240

Query: 241 QQHVKGTSTRDSDVEGQASRKVSLQRYLEKRKDR 263
            +  K  S+RDS +EGQA+RKVSLQRY EKRKDR
Sbjct: 241 LE--KANSSRDSGMEGQANRKVSLQRYREKRKDR 249

The following BLAST results are available for this feature:

BLAST of CmoCh17G002010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GY55	9.1e-58	43.16	Protein TIFY 4B OS=Arabidopsis thaliana OX=3702 GN=TIFY4B PE=1 SV=1	[more]
Q7XA73	9.7e-52	47.81	Protein TIFY 4A OS=Arabidopsis thaliana OX=3702 GN=TIFY4A PE=1 SV=1	[more]
Q7XPM8	3.1e-05	32.77	Protein TIFY 3 OS=Oryza sativa subsp. japonica OX=39947 GN=TIFY3 PE=1 SV=1	[more]

BLAST of CmoCh17G002010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2X2	3.6e-182	89.67	protein TIFY 4B-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459923 PE...	[more]
A0A6J1H2N2	1.2e-180	89.13	protein TIFY 4B-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111459923 PE...	[more]
A0A6J1KWM5	2.9e-176	87.80	protein TIFY 4B-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499380 PE=3...	[more]
A0A6J1L5S1	9.4e-175	87.26	protein TIFY 4B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499380 PE=3...	[more]
A0A6J1H3X6	5.9e-161	88.86	protein TIFY 4B-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111459923 PE...	[more]

BLAST of CmoCh17G002010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14720.1	6.5e-59	43.16	TIFY domain/Divergent CCT motif family protein	[more]
AT4G14713.2	4.1e-53	46.95	TIFY domain/Divergent CCT motif family protein	[more]
AT4G14713.1	6.9e-53	47.81	TIFY domain/Divergent CCT motif family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010399	Tify domain	SMART	SM00979	tify_2	coord: 138..173 e-value: 9.2E-13 score: 58.4
IPR010399	Tify domain	PFAM	PF06200	tify	coord: 144..172 e-value: 3.6E-15 score: 55.0
IPR010399	Tify domain	PROSITE	PS51320	TIFY	coord: 138..173 score: 14.892074
IPR018467	CO/COL/TOC1, conserved site	PFAM	PF09425	Jas_motif	coord: 245..262 e-value: 2.4E-8 score: 33.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..249
None	No IPR available	PANTHER	PTHR33077:SF60	PROTEIN TIFY 4B-LIKE ISOFORM X1	coord: 5..263
IPR040390	TIFY/JAZ family	PANTHER	PTHR33077	PROTEIN TIFY 4A-RELATED-RELATED	coord: 5..263

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G002010.1	CmoCh17G002010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031347	regulation of defense response
biological_process	GO:2000022	regulation of jasmonic acid mediated signaling pathway
biological_process	GO:0009611	response to wounding
cellular_component	GO:0005634	nucleus