CmoCh17G001710 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCAGCAGCAGCCAGGCTGCTTCCGGAGCCGGGCGCCAGCGTCCCTGCAAATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGCCTAATTCCGGCGAAGGATCCTCCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGATTCATCCCTGCTTAG ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCAGCAGCAGCCAGGCTGCTTCCGGAGCCGGGCGCCAGCGTCCCTGCAAATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGCCTAATTCCGGCGAAGGATCCTCCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGATTCATCCCTGCTTAG ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCAGCAGCAGCCAGGCTGCTTCCGGAGCCGGGCGCCAGCGTCCCTGCAAATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGCCTAATTCCGGCGAAGGATCCTCCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGATTCATCCCTGCTTAG MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIPA Homology
BLAST of CmoCh17G001710 vs. ExPASy Swiss-Prot
Match: Q6NN02 (Uncharacterized protein At4g14450, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g14450 PE=2 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 8.0e-07 Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 0
BLAST of CmoCh17G001710 vs. ExPASy TrEMBL
Match: A0A6J1H320 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111459957 PE=4 SV=1) HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CmoCh17G001710 vs. ExPASy TrEMBL
Match: A0A6J1KWP9 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111499400 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 5.7e-56 Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0
BLAST of CmoCh17G001710 vs. ExPASy TrEMBL
Match: A0A1S3CDB1 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103499403 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 6.3e-31 Identity = 81/132 (61.36%), Postives = 88/132 (66.67%), Query Frame = 0
BLAST of CmoCh17G001710 vs. ExPASy TrEMBL
Match: A0A6J1ER11 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111436912 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 1.7e-28 Identity = 77/119 (64.71%), Postives = 88/119 (73.95%), Query Frame = 0
BLAST of CmoCh17G001710 vs. ExPASy TrEMBL
Match: A0A6J1KKB8 (uncharacterized protein At4g14450, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111494801 PE=4 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 2.3e-28 Identity = 78/121 (64.46%), Postives = 88/121 (72.73%), Query Frame = 0
BLAST of CmoCh17G001710 vs. TAIR 10
Match: AT1G04330.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 9.4e-11 Identity = 39/84 (46.43%), Postives = 43/84 (51.19%), Query Frame = 0
BLAST of CmoCh17G001710 vs. TAIR 10
Match: AT4G14450.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 5.7e-08 Identity = 41/114 (35.96%), Postives = 59/114 (51.75%), Query Frame = 0
BLAST of CmoCh17G001710 vs. TAIR 10
Match: AT3G23170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14450.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 52.8 bits (125), Expect = 2.2e-07 Identity = 40/105 (38.10%), Postives = 51/105 (48.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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