CmoCh16G013190 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G013190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ganglioside-induced differentiation-associated protein 2-like
Location	Cmo_Chr16: 9369964 .. 9370194 (-)
RNA-Seq Expression	CmoCh16G013190
Synteny	CmoCh16G013190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGATGTGGTAGGATGTATGGGAAGATAAAGTACGTGAGTAGAATTGATCTGCTGTGGGAGCACGTACGGAGGAACGAGATCGAGGTTCCAGAGTTCATATACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGTCTGGAGAGTGACCATCCTAGGGTTTACGGTGCACCCTCAATTGATTCGCACGTGTACTCGATGAGGTGCATTTCCTAG

mRNA sequence

ATGTTTGGATGTGGTAGGATGTATGGGAAGATAAAGTACGTGAGTAGAATTGATCTGCTGTGGGAGCACGTACGGAGGAACGAGATCGAGGTTCCAGAGTTCATATACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGTCTGGAGAGTGACCATCCTAGGGTTTACGGTGCACCCTCAATTGATTCGCACGTGTACTCGATGAGGTGCATTTCCTAG

Coding sequence (CDS)

ATGTTTGGATGTGGTAGGATGTATGGGAAGATAAAGTACGTGAGTAGAATTGATCTGCTGTGGGAGCACGTACGGAGGAACGAGATCGAGGTTCCAGAGTTCATATACGATCATGATGAAGATCTTGAGTACCGTCCGATGATGGACTATGGTCTGGAGAGTGACCATCCTAGGGTTTACGGTGCACCCTCAATTGATTCGCACGTGTACTCGATGAGGTGCATTTCCTAG

Protein sequence

MFGCGRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAPSIDSHVYSMRCIS

Homology

[Close]

BLAST of CmoCh16G013190 vs. ExPASy TrEMBL
Match: A0A6J1L134 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111500201 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.1e-34
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MFGCGRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 60
           +F    MYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY
Sbjct: 126 IFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 185

Query: 61  GAPSIDSHVYSMRCIS 77
           GAPSIDSHVYSMRCIS
Sbjct: 186 GAPSIDSHVYSMRCIS 201

[Close]

BLAST of CmoCh16G013190 vs. ExPASy TrEMBL
Match: A0A6J1E710 (ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111431194 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.1e-34
Identity = 71/76 (93.42%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MFGCGRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 60
           +F    MYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY
Sbjct: 126 IFFTSEMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 185

Query: 61  GAPSIDSHVYSMRCIS 77
           GAPSIDSHVYSMRCIS
Sbjct: 186 GAPSIDSHVYSMRCIS 201

[Close]

BLAST of CmoCh16G013190 vs. ExPASy TrEMBL
Match: A0A5A7UCK6 (Ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00390 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MFGCGRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 60
           +F    +YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY
Sbjct: 163 IFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 222

Query: 61  GAPSIDSHVYSMRCIS 77
           GAPS++SHVYSMRCIS
Sbjct: 223 GAPSVESHVYSMRCIS 238

[Close]

BLAST of CmoCh16G013190 vs. ExPASy TrEMBL
Match: A0A0A0L0Z7 (CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MFGCGRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 60
           +F    +YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY
Sbjct: 126 IFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 185

Query: 61  GAPSIDSHVYSMRCIS 77
           GAPS++SHVYSMRCIS
Sbjct: 186 GAPSVESHVYSMRCIS 201

[Close]

BLAST of CmoCh16G013190 vs. ExPASy TrEMBL
Match: A0A1S3BJ81 (ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103490659 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.0e-32
Identity = 66/76 (86.84%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 1   MFGCGRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 60
           +F    +YGK++YVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY
Sbjct: 126 IFFTSEVYGKVRYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVY 185

Query: 61  GAPSIDSHVYSMRCIS 77
           GAPS++SHVYSMRCIS
Sbjct: 186 GAPSVESHVYSMRCIS 201

[Close]

BLAST of CmoCh16G013190 vs. TAIR 10
Match: AT4G35750.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 120.2 bits (300), Expect = 7.4e-28
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 5   GRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESDHPRVYGAPS 64
           G +YGK++Y+SR+D LWEHVRRNEIE+PEF+YDHD+DLEYRPMMDYG ESDH RV+   +
Sbjct: 129 GGLYGKLRYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESDHARVFAGAA 188

Query: 65  IDSHV--YSMRCIS 77
           +DS V  +SMRCIS
Sbjct: 189 VDSSVSSFSMRCIS 202

[Close]

BLAST of CmoCh16G013190 vs. TAIR 10
Match: AT3G10210.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

HSP 1 Score: 70.5 bits (171), Expect = 6.7e-13
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 5   GRMYGKIKYVSRIDLLWEHVRRNEIEVPEFIYDHDEDLEYRPMMDYGLESD 56
           G +Y KIKYVSR+  LWE +++ E+E+P+F+ +HD  LE+RP+ DYG+E D
Sbjct: 164 GGLYWKIKYVSRLQYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPD 214

The following BLAST results are available for this feature:

BLAST of CmoCh16G013190 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G013190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L134	3.1e-34	93.42	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita maxim...	[more]
A0A6J1E710	3.1e-34	93.42	ganglioside-induced differentiation-associated protein 2-like OS=Cucurbita mosch...	[more]
A0A5A7UCK6	1.0e-32	86.84	Ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo var. ma...	[more]
A0A0A0L0Z7	1.0e-32	86.84	CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002450 P...	[more]
A0A1S3BJ81	1.0e-32	86.84	ganglioside-induced differentiation-associated protein 2 OS=Cucumis melo OX=3656...	[more]

BLAST of CmoCh16G013190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35750.1	7.4e-28	70.27	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]
AT3G10210.1	6.7e-13	52.94	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11106	GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED	coord: 2..76
None	No IPR available	PANTHER	PTHR11106:SF103	OS04G0561200 PROTEIN	coord: 2..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G013190.1	CmoCh16G013190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane