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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCGCGATAATCAATATATTTCAACTCTCAGAGGAAATCCGAAGCTCCTTGATCTTGAATCTGTATCTAGGAGCTCGGGGAATAACCTGGCTAGGTCCGAAGTGGTACTGACCAGGACTATCGGTGAGAGGAGGCCCATCGTCGTAAACATAGCCGACGAGACGCGCACATGAATTGCACTTGATCTTGGTGCGATTCCGCTGGATTCCCCAATAGTTGACGGTCTCGAAGAATGGCCGGAGCTTGTCCTCTTTCTCGAGCCTGAACTTGGTGGAGTCGATCAAGGAAAACGAAAGCGTGCCCTTGTTTCCGGCCTCGAAATAGAAATCCGGCGGGAAGAGATGACTGGAATTCAGATTCAGATTTGCTCCGCATTCTGCACAACAATAGATGGAAGCCATTGTTGA mRNA sequence ATGCGCGATAATCAATATATTTCAACTCTCAGAGGAAATCCGAAGCTCCTTGATCTTGAATCTGTATCTAGGAGCTCGGGGAATAACCTGGCTAGGTCCGAAGTGGTACTGACCAGGACTATCGTTGACGGTCTCGAAGAATGGCCGGAGCTTGTCCTCTTTCTCGAGCCTGAACTTGGTGGAGTCGATCAAGGAAAACGAAAGCGTGCCCTTGTTTCCGGCCTCGAAATAGAAATCCGGCGGGAAGAGATGACTGGAATTCAGATTCAGATTTGCTCCGCATTCTGCACAACAATAGATGGAAGCCATTGTTGA Coding sequence (CDS) ATGCGCGATAATCAATATATTTCAACTCTCAGAGGAAATCCGAAGCTCCTTGATCTTGAATCTGTATCTAGGAGCTCGGGGAATAACCTGGCTAGGTCCGAAGTGGTACTGACCAGGACTATCGTTGACGGTCTCGAAGAATGGCCGGAGCTTGTCCTCTTTCTCGAGCCTGAACTTGGTGGAGTCGATCAAGGAAAACGAAAGCGTGCCCTTGTTTCCGGCCTCGAAATAGAAATCCGGCGGGAAGAGATGACTGGAATTCAGATTCAGATTTGCTCCGCATTCTGCACAACAATAGATGGAAGCCATTGTTGA Protein sequence MRDNQYISTLRGNPKLLDLESVSRSSGNNLARSEVVLTRTIVDGLEEWPELVLFLEPELGGVDQGKRKRALVSGLEIEIRREEMTGIQIQICSAFCTTIDGSHC
Homology
BLAST of CmoCh16G013030 vs. ExPASy TrEMBL
Match: A5CB28 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07 Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = 0
Query: 37 LTRTIVDGLEEWPELVLFLEPELGGVDQGKRKRALVSGLEIEIRREEMTGIQIQICSAFC 96
L ++ GLE+ P+LVLFLE EL GVD + + A V+G+E+E+R EE+ G+++++ SAF
Sbjct: 34 LDSPVIQGLEKGPDLVLFLESELXGVDACEGEGAFVAGVEVEVRWEEVGGVKVEVGSAFP 93
Query: 97 TTID 101
T +D
Sbjct: 94 TAVD 97
BLAST of CmoCh16G013030 vs. ExPASy TrEMBL
Match: A0A6A2WCL8 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilonHSYRG00019 PE=4 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 4.5e-07 Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 0
Query: 8 STLRGNPKLLDLESVSRSSGNNLARSEVVLTRTI-------------------------- 67
S+ R N + L LE++ + SG++LA ++ LT TI
Sbjct: 5 SSFRDNLECLGLEAIPKGSGDHLAGPKMPLTETICERRAIIINMTHKFPATITLDLGSVP 64
Query: 68 -----VDGLEEWPELVLFLEPELGGVDQGKRKRALVSGLEIEIRRE 83
++GLEE PELVLFLE E+G +D G+RK ALVS LE+EI RE
Sbjct: 65 VGSPVINGLEERPELVLFLEVEVGLIDHGERKGALVSRLEVEIWRE 110
BLAST of CmoCh16G013030 vs. ExPASy TrEMBL
Match: A0A498HVY7 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 2.9e-06 Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0
Query: 10 LRGNPKLLDLESVSRSSGNNLARSEVVLTRTIVDGLEEWPELVLFLEPELGGVDQGKRKR 69
L G+ LL + S+ S + L L +V LEE +LVL +EPELG VD+ KR R
Sbjct: 147 LCGSHALLIPHNFSKHSKHALDLRPRPLDPPVVSSLEERSDLVLLVEPELGCVDRRKRHR 206
Query: 70 ALVSGLEIEIRREEMTGIQIQICSAFCTTID 101
+LVSGLE E+RR E+ ++Q+ SA +D
Sbjct: 207 SLVSGLEEEVRRIEIRSGKVQVGSALRAGVD 237
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| A5CB28 | 2.0e-07 | 46.88 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_034433 PE=4 SV=1 | [more] |
| A0A6A2WCL8 | 4.5e-07 | 39.62 | Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117012pilon... | [more] |
| A0A498HVY7 | 2.9e-06 | 42.86 | Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_029681 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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