CmoCh16G012980 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Location	Cmo_Chr16: 9243423 .. 9243848 (+)
RNA-Seq Expression	CmoCh16G012980
Synteny	CmoCh16G012980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGAAACCCCGCTTCCTTGTAGTGCCGATTCGAGCCTTCGACCTACGACACCTGATGATTGTGTCGCAGCTCTTTCGAGTCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGGAACAAGGACAAAGACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCGCACGAGTTTCATAAGATATGTCTCGATCGATGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCAATGGAAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA

mRNA sequence

ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGAAACCCCGCTTCCTTGTAGTGCCGATTCGAGCCTTCGACCTACGACACCTGATGATTGTGTCGCAGCTCTTTCGAGTCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGGAACAAGGACAAAGACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCGCACGAGTTTCATAAGATATGTCTCGATCGATGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCAATGGAAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA

Coding sequence (CDS)

ATGGTTTTCAACAAGCTCTTCTTCTTCTTCTACAACAACCTCATCGGCTTCCGAACCAGCCCGACACTCAAGCAAGAAACCCCGCTTCCTTGTAGTGCCGATTCGAGCCTTCGACCTACGACACCTGATGATTGTGTCGCAGCTCTTTCGAGTCCTGAGAAGGCGTTGGAAGGCGAGACATGTTGCGTATGCTTGTCGTGTATGGGGAACAAGGACAAAGACGAGGGAATTGGCACGAGTGTTCTTCCTTGCTCGCACGAGTTTCATAAGATATGTCTCGATCGATGGTTCGAAGAGTGTCGGAGAACTTGTCCGATATGCCGATATTCAATGGAAGGAGGGAATAATCATGAAGATGGGAGTAATGAAATGCTAACGGATGAGATGGTGATATGGTTTTCTTCTTTCCACACCTCTGGTTTTTGA

Protein sequence

MVFNKLFFFFYNNLIGFRTSPTLKQETPLPCSADSSLRPTTPDDCVAALSSPEKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGNNHEDGSNEMLTDEMVIWFSSFHTSGF

Homology

[Close]

BLAST of CmoCh16G012980 vs. ExPASy Swiss-Prot
Match: Q4R6Y5 (E3 ubiquitin-protein ligase ZNRF4 OS=Macaca fascicularis OX=9541 GN=ZNRF4 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 25/71 (35.21%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 59  ETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEEC-RRTCPICRYSMEGGNNH 118
           + C +CL      + +EG    +LPCSH +H  C+D WF +  RR+CP+C+ S+ G  + 
Sbjct: 307 DLCAICLD-----EYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAGTEDS 366

Query: 119 EDGSNEMLTDE 129
            D + +  +DE
Sbjct: 367 FDSTTDSFSDE 372

[Close]

BLAST of CmoCh16G012980 vs. ExPASy Swiss-Prot
Match: Q9H6Y7 (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-08
Identity = 24/71 (33.80%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 53  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSME 112
           +K  + + C +CL      + ++G    VLPC+H +H  C+D W  + R+TCPIC+  + 
Sbjct: 222 QKGDQYDVCAICLD-----EYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVH 281

Query: 113 GGNNHEDGSNE 124
            G   ED   E
Sbjct: 282 RGPGDEDQEEE 287

[Close]

BLAST of CmoCh16G012980 vs. ExPASy Swiss-Prot
Match: Q91XF4 (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-08
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 0


Query: 53  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSME 112
           +K  E + C +CL      + ++G    VLPC+H +H  C+D W  + R+TCPIC+  + 
Sbjct: 222 QKGDEYDVCAICLD-----EYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVH 281

Query: 113 GGNNHEDGSNEMLTDE 129
            G   E+   E    E
Sbjct: 282 RGPGDEEQEEETQEQE 292

[Close]

BLAST of CmoCh16G012980 vs. ExPASy Swiss-Prot
Match: F4HZZ5 (Receptor homology region, transmembrane domain- and RING domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=RMR5 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-08
Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 53  EKALEGETCCVCLS--CMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYS 112
           E++    TC +C+   C+G K         +LPC H++H +C+D W   CR  CP+C+ +
Sbjct: 225 EESSTSVTCAICIDDYCVGEK-------LRILPCKHKYHAVCIDSWLGRCRSFCPVCKQN 283

Query: 113 MEGGNN 117
              GN+
Sbjct: 285 PRTGND 283

[Close]

BLAST of CmoCh16G012980 vs. ExPASy Swiss-Prot
Match: Q5XIL0 (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.0e-08
Identity = 23/71 (32.39%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 53  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSME 112
           +K  E + C +CL      + ++G    +LPC+H +H  C+D W  + R+TCPIC+  + 
Sbjct: 222 QKGDEYDVCAICLD-----EYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPVH 281

Query: 113 GGNNHEDGSNE 124
            G   E+   E
Sbjct: 282 RGPGDEEQEEE 287

[Close]

BLAST of CmoCh16G012980 vs. ExPASy TrEMBL
Match: A0A0A0L4W7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.2e-59
Identity = 110/144 (76.39%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 1   MVFNKLFFFFYNNLIGFRTSPTLKQETPLPCSADSSLRPTTPDDC-VAALSSPEKALEGE 60
           M+FNK+FFFFYNNLIGFR+ P  KQ TPLP S +SSLRP   DDC + ALSS EKALEGE
Sbjct: 1   MIFNKVFFFFYNNLIGFRSRPRFKQATPLPRSGNSSLRPLPTDDCTILALSSLEKALEGE 60

Query: 61  TCCVCLSCMGNKDK--DEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGNNH 120
           TCCVCLS MGN D+  D+G+GTSVLPC HEFHK+C++RWFEECRRTCPICRYSMEGG +H
Sbjct: 61  TCCVCLSSMGNTDRDGDKGVGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGGGSH 120

Query: 121 EDGSNEMLTDEMVIWFSSFHTSGF 142
           ED +N++LTDEMVIWFSSFHTSGF
Sbjct: 121 EDETNQILTDEMVIWFSSFHTSGF 144

[Close]

BLAST of CmoCh16G012980 vs. ExPASy TrEMBL
Match: A0A5D3CJ45 (E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00530 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.0e-54
Identity = 110/149 (73.83%), Postives = 121/149 (81.21%), Query Frame = 0


Query: 1   MVFNKLFFFFYNNLIGFRTSPT-LKQETPLPCSADSSLRPTTPDDC-VAALSSPEKALEG 60
           MVFNK+FFFFYNN IGFR+ PT  KQ TPLP   +SSLRP   DDC + ALSS EKALEG
Sbjct: 1   MVFNKVFFFFYNNFIGFRSRPTRFKQATPLPHGGNSSLRPMPTDDCTIIALSSLEKALEG 60

Query: 61  ETCCVCLSCMGNK----DKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSME-- 120
           ETCCVCLS MGN     DK  G GTSVLPC HEFHK+C++RWFEECRRTCPICRYSME  
Sbjct: 61  ETCCVCLSSMGNTDGDGDKGVGNGTSVLPCLHEFHKVCVERWFEECRRTCPICRYSMEGG 120

Query: 121 GGNNHEDGSNEMLTDEMVIWFSSFHTSGF 142
           GG +HED +N++LTDEMVIWFSSFHTSGF
Sbjct: 121 GGGSHEDETNQILTDEMVIWFSSFHTSGF 149

[Close]

BLAST of CmoCh16G012980 vs. ExPASy TrEMBL
Match: A0A6J1CW69 (E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC111014786 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 95/147 (64.63%), Postives = 106/147 (72.11%), Query Frame = 0


Query: 1   MVFNKLFFFFYNNLIGFRTSPTLKQETPLPCSADSSLRPTTPD-----DCVAALSSPEKA 60
           MVFN++FFFFY N IGFR  P LKQ+T LP   DS+LR    D     DCV  LSS  KA
Sbjct: 1   MVFNRVFFFFY-NFIGFRGRPKLKQKTLLPHGGDSTLRQMVEDESRIPDCV-TLSSSGKA 60

Query: 61  LEGE-TCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGG 120
           LEGE  CCVCLS +     +EGI TSVLPC HEFHK+C+DRWFEE RRTCPICRYSMEG 
Sbjct: 61  LEGEMCCCVCLSSI-----EEGIETSVLPCLHEFHKVCVDRWFEERRRTCPICRYSMEGA 120

Query: 121 NNHEDGSNEMLTDEMVIWFSSFHTSGF 142
               +   ++LTDEMVIWFSSFHTSGF
Sbjct: 121 GQGNENGTQILTDEMVIWFSSFHTSGF 140

[Close]

BLAST of CmoCh16G012980 vs. ExPASy TrEMBL
Match: A0A803PEM7 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 63/141 (44.68%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MVFNKLFFFFYNNLIGFRTSPTLKQETPLPCSADSSLRPTTPDDCVAALSSPEKALEGET 60
           MVFN L    YNN +  +  P +K E P  C  D        D+ +A  ++     EGE 
Sbjct: 1   MVFNSLLSTLYNNFMSLKPQPRMK-EPPASCDVDEVNVEHKVDEALAESATDSITGEGEF 60

Query: 61  CCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGNNHEDG 120
           CCVCLS +      EG  TS+LPC HEFHK C++RWF  CR+TCP+CR++ME    +  G
Sbjct: 61  CCVCLSRL------EGEETSILPCMHEFHKECVERWFHACRKTCPVCRFAMEEDKCYYAG 120

Query: 121 SNEMLTDEMVIWFSSFHTSGF 142
             E  T+EM+I+FSSFH +GF
Sbjct: 121 --EFFTEEMLIYFSSFHAAGF 132

[Close]

BLAST of CmoCh16G012980 vs. ExPASy TrEMBL
Match: A0A7N2R4T7 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 70/146 (47.95%), Postives = 87/146 (59.59%), Query Frame = 0


Query: 1   MVFNKLFFFFYNNLIG----FRTSPTLKQETPLPCSADSSLRPTTPDDCVAALSSPEKAL 60
           MVF KL  F YN+LIG     R  PT  +       A S L   + D+ V      E  +
Sbjct: 1   MVFKKLVCFIYNHLIGNGDHLRAQPTFWE-------APSLLHKVSLDE-VEVEVEVEVEV 60

Query: 61  EGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEE-CRRTCPICRYSMEGGN 120
           EGE CCVCLS +  K ++E      LPC HEFHKIC+DRWF   CR+TCP+CR+SM G +
Sbjct: 61  EGEVCCVCLSRL-KKGQEE---MRTLPCLHEFHKICVDRWFNHVCRKTCPVCRFSMGGED 120

Query: 121 NHEDGSNEMLTDEMVIWFSSFHTSGF 142
                + ++LTDEMVIWFSSFH +GF
Sbjct: 121 KFH--TQQVLTDEMVIWFSSFHVAGF 132

[Close]

BLAST of CmoCh16G012980 vs. TAIR 10
Match: AT3G51325.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13
Identity = 37/82 (45.12%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 57  EGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRR-TCPICRYSMEGGN 116
           E E C VCL  M  KD  +      LPCSHEFH +C+D WF   R+  CP+CR+S     
Sbjct: 22  EEECCSVCLMRMEAKDVIKS-----LPCSHEFHSLCVDTWFNVSRKICCPLCRFS----- 81

Query: 117 NHEDGSNEMLTDEMVIWFSSFH 138
                +  +LTDE+++WFSSFH
Sbjct: 82  ----PTTILLTDELLLWFSSFH 89

[Close]

BLAST of CmoCh16G012980 vs. TAIR 10
Match: AT1G35630.1 (Protease-associated (PA) RING/U-box zinc finger family protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 22/66 (33.33%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 53  EKALEGETCCVCLS--CMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYS 112
           E++    TC +C+   C+G K         +LPC H++H +C+D W   CR  CP+C+ +
Sbjct: 225 EESSTSVTCAICIDDYCVGEK-------LRILPCKHKYHAVCIDSWLGRCRSFCPVCKQN 283

Query: 113 MEGGNN 117
              GN+
Sbjct: 285 PRTGND 283

[Close]

BLAST of CmoCh16G012980 vs. TAIR 10
Match: AT1G35625.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 22/60 (36.67%), Postives = 32/60 (53.33%), Query Frame = 0


Query: 57  EGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICRYSMEGGNN 116
           EG T   C  C+   D   G    +LPC H++H +C+D W   CR  CP+C+ +   GN+
Sbjct: 109 EGSTSVTCAICI--DDYRVGEILRILPCKHKYHAVCIDSWLGRCRSFCPVCKQNPRTGND 166

[Close]

BLAST of CmoCh16G012980 vs. TAIR 10
Match: AT4G32600.1 (RING/U-box superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 0


Query: 32  SADSSLRPTTPDDCVAALSSPEKALEGE--TCCVCLSCMGNKDKDEGIGTSVLPCSHEFH 91
           + D +   T+    VAA +  E+A+ GE   CC+CL+   N ++        LPCSH FH
Sbjct: 332 NGDDNGSSTSEGGVVAAGTDNERAISGEDAVCCICLAKYANNEE-----LRELPCSHFFH 391

Query: 92  KICLDRWFEECRRTCPICRYSMEGGNNHEDGSNEMLT 127
           K C+D+W  +   +CP+C+ S  G  N +  S  +LT
Sbjct: 392 KECVDKWL-KINASCPLCK-SEVGEKNSDLTSQGILT 421

[Close]

BLAST of CmoCh16G012980 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.1e-08
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 53  EKALEGETCCVCLSCMGNKDKDEGIGTSVLPCSHEFHKICLDRWFEECRRTCPICR 109
           E+  +G  CCVCL   G K+++E   + ++ C H FH+ CLD WF     TCP+CR
Sbjct: 59  EEEEKGVECCVCL--CGFKEEEE--VSELVSCKHFFHRACLDNWFGNNHTTCPLCR 110

The following BLAST results are available for this feature:

BLAST of CmoCh16G012980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4R6Y5	1.4e-08	35.21	E3 ubiquitin-protein ligase ZNRF4 OS=Macaca fascicularis OX=9541 GN=ZNRF4 PE=2 S...	[more]
Q9H6Y7	5.3e-08	33.80	E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens OX=9606 GN=RNF167 PE=1 SV=1	[more]
Q91XF4	5.3e-08	32.89	E3 ubiquitin-protein ligase RNF167 OS=Mus musculus OX=10090 GN=Rnf167 PE=2 SV=1	[more]
F4HZZ5	6.9e-08	33.33	Receptor homology region, transmembrane domain- and RING domain-containing prote...	[more]
Q5XIL0	9.0e-08	32.39	E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus OX=10116 GN=Rnf167 PE=2 ...	[more]

BLAST of CmoCh16G012980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4W7	5.2e-59	76.39	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G002620 P...	[more]
A0A5D3CJ45	3.0e-54	73.83	E3 ubiquitin-protein ligase RNF13 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1CW69	2.9e-41	64.63	E3 ubiquitin-protein ligase SDIR1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A803PEM7	1.4e-24	44.68	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A7N2R4T7	2.7e-23	47.95	RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CmoCh16G012980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51325.1	1.5e-13	45.12	RING/U-box superfamily protein	[more]
AT1G35630.1	4.9e-09	33.33	Protease-associated (PA) RING/U-box zinc finger family protein	[more]
AT1G35625.1	1.4e-08	36.67	RING/U-box superfamily protein	[more]
AT4G32600.1	1.9e-08	35.05	RING/U-box superfamily protein	[more]
AT1G24580.1	7.1e-08	42.86	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 61..107 e-value: 1.1E-4 score: 31.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 60..108 e-value: 2.9E-8 score: 33.9
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 61..108 score: 11.869652
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 46..124 e-value: 2.1E-14 score: 54.4
None	No IPR available	PANTHER	PTHR45977:SF13	GB\|AAF27103.1	coord: 11..117
None	No IPR available	PANTHER	PTHR45977	TARGET OF ERK KINASE MPK-1	coord: 11..117
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 41..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012980.1	CmoCh16G012980.1	mRNA