CmoCh16G012850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	cold shock domain-containing protein 3-like
Location	Cmo_Chr16: 9158915 .. 9159706 (+)
RNA-Seq Expression	CmoCh16G012850
Synteny	CmoCh16G012850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTCCATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTCGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGTAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGTGGTGGTGGTGGTGGTGGTGGCTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGTCGTGGCAGCGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGATGTAAGGAGTGAGACAGAGTAA

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTCCATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTCGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGTAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGTGGTGGTGGTGGTGGTGGTGGCTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGTCGTGGCAGCGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGATGTAAGGAGTGAGACAGAGTAA

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTCCATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTCGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGTAATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGTGGTGGTGGTGGTGGTGGTGGCTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGAGATTGCCAGAATGAAAGTCGTGGCAGCGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGATGTAAGGAGTGAGACAGAGTAA

Protein sequence

MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

Homology

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BLAST of CmoCh16G012850 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.7e-56
Identity = 157/300 (52.33%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----GGGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G  G       GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNS-- 184
               G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+   
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --GGGGGGGAGGGACYNCGGFGHLARDCNRGGAG------------GG------------ 244
             GGGGG G+GG  CY CGG GH ARDC + G G            GG            
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKI 249

Query: 245 -SGGGGGG--CFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDV 259
            SGGGGGG  C+ CG  GHLARDC     GS G   GGGG+N CF CGK GHFAREC  V
Sbjct: 250 PSGGGGGGRACYECGGTGHLARDCDRRGSGSSG---GGGGSNKCFICGKEGHFARECTSV 300

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BLAST of CmoCh16G012850 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.0e-49
Identity = 145/293 (49.49%), Postives = 165/293 (56.31%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY------------GFGGWRGGDRRNG 124
           KA+ V A  G S  + +N  G G R G GGG G Y            G GG  GG  R  
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDCGIGGGGGGGERR- 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSG 184
               GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G
Sbjct: 130 --SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGGGGGA---GGGACYNCGGFGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDC 244
            G   GA   G   CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+ARDC
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 QNESRGSGG-----------------GRFGGGGANTCFNCGKSGHFARECPDV 259
             + + S G                 G  GGG  N C+ CGK GHFAREC  V
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSSV 298

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BLAST of CmoCh16G012850 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.8e-39
Identity = 128/264 (48.48%), Postives = 146/264 (55.30%), Query Frame = 0


Query: 1   MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
           MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  PGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSG 120
            G DG++KA++V   DG++  G R    GGGGG GGRGGGG G G GG+ GG  R GS G
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQGGR----GGGGGGGGRGGGGYGGGSGGY-GGGGRGGSRG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA 180
            GGG                     GGGGG GG                G+  GGGGGG 
Sbjct: 121 YGGGD-----------------GGYGGGGGYGG----------------GSRYGGGGGGY 180

Query: 181 GGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRF- 240
           GGG                 GG GGG  GGG GCF CGE GH ARDC     G GGGRF 
Sbjct: 181 GGG-----------------GGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFG 209

Query: 241 ---GGGGANTCFNCGKSGHFAREC 256
              GGGG   C+ CG+ GHFAREC
Sbjct: 241 GGGGGGGGGGCYKCGEDGHFAREC 209

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BLAST of CmoCh16G012850 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.2e-35
Identity = 113/227 (49.78%), Postives = 134/227 (59.03%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGC 123
            KAI+V   DG+   GN      GGG  GGRG      GFGG RGG R +G    GGGG 
Sbjct: 69  PKAIDVSGPDGAPVQGN-----SGGGSSGGRG------GFGGGRGGGRGSGGGYGGGGGG 128

Query: 124 YQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGAGGGAC 183
           Y  G +G            GGG GG  C+ CGE GH+ARDC  G  G GGGGGG GGG  
Sbjct: 129 Y--GGRG------------GGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGG 188

Query: 184 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR 228
           Y  GG G+       GG G G GGGGG C++CGE GH ARDC +  R
Sbjct: 189 YGGGGGGY-------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

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BLAST of CmoCh16G012850 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.4e-32
Identity = 111/230 (48.26%), Postives = 129/230 (56.09%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 123
            KAIEV   DG+    + N GGGG  GGRGG GGG G GG RGG    GS G G GG   
Sbjct: 73  PKAIEVSGPDGAP--VQGNSGGGGSSGGRGGFGGGGGRGGGRGG----GSYGGGYGG--- 132

Query: 124 CGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNC 183
                        +  RGGGGG   CF CGE GH+AR+C   + GGGG  G GGG  Y  
Sbjct: 133 -----------RGSGGRGGGGGDNSCFKCGEPGHMAREC---SQGGGGYSGGGGGGRYGS 192

Query: 184 GGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGR 234
           GG             GGG GGGG  C++CGE GH ARDC      SGG R
Sbjct: 193 GG-------------GGGGGGGGLSCYSCGESGHFARDCT-----SGGAR 201

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BLAST of CmoCh16G012850 vs. ExPASy TrEMBL
Match: A0A6J1E5N5 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430958 PE=4 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 1.1e-142
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGAC 180
           CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGAC
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGAC 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGAN 240
           YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGAN
Sbjct: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGAN 240

Query: 241 TCFNCGKSGHFARECPDVRSETE 264
           TCFNCGKSGHFARECPDVRSETE
Sbjct: 241 TCFNCGKSGHFARECPDVRSETE 263

[Close]

BLAST of CmoCh16G012850 vs. ExPASy TrEMBL
Match: A0A6J1HNK3 (cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111465226 PE=4 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 9.8e-136
Identity = 258/266 (96.99%), Postives = 258/266 (96.99%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGA 180
           CYQCGEQGHLARDCTRASNR GGGGGGGGCFTCGEVGHLARDCPRGNS    GGGAGGGA
Sbjct: 121 CYQCGEQGHLARDCTRASNRGGGGGGGGGCFTCGEVGHLARDCPRGNS----GGGAGGGA 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGS--GGGRFGGG 240
           CYNCGGFGHLARDCNRGGAGGGSGGGGG CFNCGEYGHLARDCQNESRGS  GGGRFGGG
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGSCFNCGEYGHLARDCQNESRGSGGGGGRFGGG 240

Query: 241 GANTCFNCGKSGHFARECPDVRSETE 264
           GANTCFNCGKSGHFARECPDVRSETE
Sbjct: 241 GANTCFNCGKSGHFARECPDVRSETE 262

[Close]

BLAST of CmoCh16G012850 vs. ExPASy TrEMBL
Match: A0A6J1GAE9 (cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 5.8e-128
Identity = 249/262 (95.04%), Postives = 249/262 (95.04%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR  GGGGYGFGGWRGGDRRNGSSGAGGGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR--GGGGYGFGGWRGGDRRNGSSGAGGGG 120

Query: 121 CYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGA 180
           CYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNS GGGGGGAGGG 
Sbjct: 121 CYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGG 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGS-GGGRF---G 240
           CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR S GGGRF   G
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGGG 240

Query: 241 GGGANTCFNCGKSGHFARECPD 258
           GGGANTCFNCGKSGHFARECPD
Sbjct: 241 GGGANTCFNCGKSGHFARECPD 259

[Close]

BLAST of CmoCh16G012850 vs. ExPASy TrEMBL
Match: A0A5D3CJR2 (Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00680 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.8e-128
Identity = 251/270 (92.96%), Postives = 255/270 (94.44%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGGGGGYGFGGWRGGDRRNGSSG 120
           DGKSKAIEVVALDGSSGNRRDNF    GGGGGRGGR GGGGGGYGFGGWRGGDRRNG+SG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180

Query: 181 GAGGGACYNCGGFGHLARDCNRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGS--G 240
           G+GGGACYNCGGFGHLARDCNRGGAGGGS GGGGGGCFNCGEYGH+ARDCQNESRGS  G
Sbjct: 181 GSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGG 240

Query: 241 GGRF---GGGGANTCFNCGKSGHFARECPD 258
           GGRF   GGGG+NTCFNCGKSGHFARECPD
Sbjct: 241 GGRFGGGGGGGSNTCFNCGKSGHFARECPD 270

[Close]

BLAST of CmoCh16G012850 vs. ExPASy TrEMBL
Match: E5RDD6 (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.8e-128
Identity = 251/270 (92.96%), Postives = 255/270 (94.44%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGGGGGYGFGGWRGGDRRNGSSG 120
           DGKSKAIEVVALDGSSGNRRDNF    GGGGGRGGR GGGGGGYGFGGWRGGDRRNG+SG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180

Query: 181 GAGGGACYNCGGFGHLARDCNRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGS--G 240
           G+GGGACYNCGGFGHLARDCNRGGAGGGS GGGGGGCFNCGEYGH+ARDCQNESRGS  G
Sbjct: 181 GSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSGGG 240

Query: 241 GGRF---GGGGANTCFNCGKSGHFARECPD 258
           GGRF   GGGG+NTCFNCGKSGHFARECPD
Sbjct: 241 GGRFGGGGGGGSNTCFNCGKSGHFARECPD 270

[Close]

BLAST of CmoCh16G012850 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 218.4 bits (555), Expect = 6.9e-57
Identity = 157/300 (52.33%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----GGGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G  G       GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNS-- 184
               G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+   
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --GGGGGGGAGGGACYNCGGFGHLARDCNRGGAG------------GG------------ 244
             GGGGG G+GG  CY CGG GH ARDC + G G            GG            
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKI 249

Query: 245 -SGGGGGG--CFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDV 259
            SGGGGGG  C+ CG  GHLARDC     GS G   GGGG+N CF CGK GHFAREC  V
Sbjct: 250 PSGGGGGGRACYECGGTGHLARDCDRRGSGSSG---GGGGSNKCFICGKEGHFARECTSV 300

[Close]

BLAST of CmoCh16G012850 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-50
Identity = 145/293 (49.49%), Postives = 165/293 (56.31%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY------------GFGGWRGGDRRNG 124
           KA+ V A  G S  + +N  G G R G GGG G Y            G GG  GG  R  
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRG-GGGSGCYNCGELGHISKDCGIGGGGGGGERR- 129

Query: 125 SSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSG 184
               GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G
Sbjct: 130 --SRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGGGGGA---GGGACYNCGGFGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDC 244
            G   GA   G   CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+ARDC
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 QNESRGSGG-----------------GRFGGGGANTCFNCGKSGHFARECPDV 259
             + + S G                 G  GGG  N C+ CGK GHFAREC  V
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSSV 298

[Close]

BLAST of CmoCh16G012850 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-36
Identity = 113/227 (49.78%), Postives = 134/227 (59.03%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGC 123
            KAI+V   DG+   GN      GGG  GGRG      GFGG RGG R +G    GGGG 
Sbjct: 69  PKAIDVSGPDGAPVQGN-----SGGGSSGGRG------GFGGGRGGGRGSGGGYGGGGGG 128

Query: 124 YQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGAGGGAC 183
           Y  G +G            GGG GG  C+ CGE GH+ARDC  G  G GGGGGG GGG  
Sbjct: 129 Y--GGRG------------GGGRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGG 188

Query: 184 YNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESR 228
           Y  GG G+       GG G G GGGGG C++CGE GH ARDC +  R
Sbjct: 189 YGGGGGGY-------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of CmoCh16G012850 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 140.2 bits (352), Expect = 2.4e-33
Identity = 111/230 (48.26%), Postives = 129/230 (56.09%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQ 123
            KAIEV   DG+    + N GGGG  GGRGG GGG G GG RGG    GS G G GG   
Sbjct: 73  PKAIEVSGPDGAP--VQGNSGGGGSSGGRGGFGGGGGRGGGRGG----GSYGGGYGG--- 132

Query: 124 CGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNC 183
                        +  RGGGGG   CF CGE GH+AR+C   + GGGG  G GGG  Y  
Sbjct: 133 -----------RGSGGRGGGGGDNSCFKCGEPGHMAREC---SQGGGGYSGGGGGGRYGS 192

Query: 184 GGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGR 234
           GG             GGG GGGG  C++CGE GH ARDC      SGG R
Sbjct: 193 GG-------------GGGGGGGGLSCYSCGESGHFARDCT-----SGGAR 201

The following BLAST results are available for this feature:

BLAST of CmoCh16G012850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C69	9.7e-56	52.33	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	3.0e-49	49.49	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
P27484	4.8e-39	48.48	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q41188	3.2e-35	49.78	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q38896	3.4e-32	48.26	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]

BLAST of CmoCh16G012850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5N5	1.1e-142	100.00	cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HNK3	9.8e-136	96.99	cold shock domain-containing protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GAE9	5.8e-128	95.04	cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=...	[more]
A0A5D3CJR2	9.8e-128	92.96	Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
E5RDD6	9.8e-128	92.96	Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]

BLAST of CmoCh16G012850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17870.1	6.9e-57	52.33	cold shock domain protein 3	[more]
AT4G36020.1	2.1e-50	49.49	cold shock domain protein 1	[more]
AT4G38680.1	2.3e-36	49.78	glycine rich protein 2	[more]
AT2G21060.1	2.4e-33	48.26	glycine-rich protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 165..180 score: 54.69 coord: 86..97 score: 45.83 coord: 230..248 score: 30.92 coord: 195..205 score: 38.64
None	No IPR available	GENE3D	2.40.50.140		coord: 1..70 e-value: 4.4E-25 score: 89.4
None	No IPR available	GENE3D	4.10.60.10		coord: 202..233 e-value: 1.2E-7 score: 33.3 coord: 144..171 e-value: 1.4E-7 score: 33.0 coord: 107..143 e-value: 4.9E-6 score: 28.1 coord: 175..201 e-value: 2.3E-5 score: 25.9 coord: 237..262 e-value: 1.6E-8 score: 36.0
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 1..111 coord: 111..143 coord: 137..258
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 137..258 coord: 111..143
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..111
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 8..23 score: 61.03 coord: 44..62 score: 40.09 coord: 29..38 score: 59.44
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..71 e-value: 1.1E-22 score: 79.7
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 5..71 score: 30.335478
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 3.35985E-24 score: 90.3306
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 1.5E-24 score: 97.6
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 148..164 e-value: 2.6E-5 score: 33.7 coord: 120..136 e-value: 2.9E-4 score: 30.2 coord: 208..224 e-value: 3.2E-5 score: 33.4 coord: 241..257 e-value: 5.9E-6 score: 35.8 coord: 179..195 e-value: 4.0E-4 score: 29.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 179..193 e-value: 3.4E-6 score: 26.9 coord: 208..223 e-value: 5.0E-7 score: 29.5 coord: 240..256 e-value: 5.1E-8 score: 32.7 coord: 120..135 e-value: 2.8E-6 score: 27.2 coord: 148..163 e-value: 1.1E-7 score: 31.6
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 149..164 score: 11.086722
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 209..224 score: 10.921894
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 180..193 score: 10.476859
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 242..257 score: 11.432861
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 121..136 score: 11.004309
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 19..38
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 179..224
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 224..260
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 112..166
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012850.1	CmoCh16G012850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding