CmoCh16G012720 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DUF4219 domain-containing protein
Location	Cmo_Chr16: 9079190 .. 9079432 (+)
RNA-Seq Expression	CmoCh16G012720
Synteny	CmoCh16G012720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAATCAAGTTTTTCAGTTGTTGCACCACCCGTCTTCGATGGAGACAATTATCAAATGTGGGCAGTTCGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAGACAGGAAATCAAAGGCAAAAGCTTGCCTATTTGCCGCTGTATCTGAAATGA

mRNA sequence

ATGGGAGAATCAAGTTTTTCAGTTGTTGCACCACCCGTCTTCGATGGAGACAATTATCAAATGTGGGCAGTTCGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAGACAGGAAATCAAAGGCAAAAGCTTGCCTATTTGCCGCTGTATCTGAAATGA

Coding sequence (CDS)

ATGGGAGAATCAAGTTTTTCAGTTGTTGCACCACCCGTCTTCGATGGAGACAATTATCAAATGTGGGCAGTTCGTATGGAGACTTATTTGGAGGCCTTGGATCTTTGGGAAGCAATAGAAGAGGATTACGAGGTCCCTCCGCTTCCAGCAAATCCTACTGTAGCACAAATCAAATTACAGAAGGAAAAGAAGACAGGAAATCAAAGGCAAAAGCTTGCCTATTTGCCGCTGTATCTGAAATGA

Protein sequence

MGESSFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQKEKKTGNQRQKLAYLPLYLK

Homology

[Close]

BLAST of CmoCh16G012720 vs. ExPASy TrEMBL
Match: A0A6J1H529 (uncharacterized protein LOC111460124 OS=Cucurbita moschata OX=3662 GN=LOC111460124 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.4e-29
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MGESSFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQ 60
          MGESSFS VAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQ
Sbjct: 1  MGESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQ 60

Query: 61 KEKKTGNQRQK 72
          KEKKT   + K
Sbjct: 61 KEKKTRKSKAK 71

[Close]

BLAST of CmoCh16G012720 vs. ExPASy TrEMBL
Match: A0A6J1EUJ8 (uncharacterized protein LOC111437700 OS=Cucurbita moschata OX=3662 GN=LOC111437700 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.6e-28
Identity = 63/71 (88.73%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MGESSFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQ 60
          MGESSFS VAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLP NPTVAQI+LQ
Sbjct: 1  MGESSFSAVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPTNPTVAQIQLQ 60

Query: 61 KEKKTGNQRQK 72
          KEKKT   + K
Sbjct: 61 KEKKTRKSKAK 71

[Close]

BLAST of CmoCh16G012720 vs. ExPASy TrEMBL
Match: A0A6J1G1V7 (uncharacterized protein LOC111449922 OS=Cucurbita moschata OX=3662 GN=LOC111449922 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.9e-28
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1  MGESSFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQ 60
          MGESSFS +APPVFDGDNYQMWAVRMETY EALDLWEAIEEDYEVPPLPANPTVAQIKLQ
Sbjct: 1  MGESSFSAIAPPVFDGDNYQMWAVRMETYFEALDLWEAIEEDYEVPPLPANPTVAQIKLQ 60

Query: 61 KEKKTGNQRQK 72
           EKKT   + K
Sbjct: 61 NEKKTRKSKAK 71

[Close]

BLAST of CmoCh16G012720 vs. ExPASy TrEMBL
Match: A0A6J1EGX0 (uncharacterized protein LOC111434088 OS=Cucurbita moschata OX=3662 GN=LOC111434088 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.9e-28
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 2  GESSFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQK 61
          GESSFS VAPP+FDGDNYQMWAVRMETYLEALDLWE IEEDYEVPPLPANPTVAQIKLQK
Sbjct: 3  GESSFSAVAPPIFDGDNYQMWAVRMETYLEALDLWEVIEEDYEVPPLPANPTVAQIKLQK 62

Query: 62 EKKTGNQRQK 72
          EKKT   + K
Sbjct: 63 EKKTRKSKAK 72

[Close]

BLAST of CmoCh16G012720 vs. ExPASy TrEMBL
Match: A0A6J1HJT1 (uncharacterized protein LOC111464225 OS=Cucurbita moschata OX=3662 GN=LOC111464225 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 64/80 (80.00%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 2  GESSFSVVAPPVFDGDNYQMWAVRMETYLEALDLWEAIEEDYEVPPLPANPTVAQIKLQK 61
          GESSFS VAPPVFDGDNYQMWAVRMETYL+ALDLWEAIEEDY+VP LPANPTVAQIKLQK
Sbjct: 3  GESSFSTVAPPVFDGDNYQMWAVRMETYLKALDLWEAIEEDYKVPSLPANPTVAQIKLQK 62

Query: 62 EKKTGNQRQKLA-YLPLYLK 81
          EKKT   + K   ++  YLK
Sbjct: 63 EKKTRKSKAKTCLFVTDYLK 82

The following BLAST results are available for this feature:

BLAST of CmoCh16G012720 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G012720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H529	5.4e-29	91.55	uncharacterized protein LOC111460124 OS=Cucurbita moschata OX=3662 GN=LOC1114601...	[more]
A0A6J1EUJ8	4.6e-28	88.73	uncharacterized protein LOC111437700 OS=Cucurbita moschata OX=3662 GN=LOC1114377...	[more]
A0A6J1G1V7	7.9e-28	87.32	uncharacterized protein LOC111449922 OS=Cucurbita moschata OX=3662 GN=LOC1114499...	[more]
A0A6J1EGX0	7.9e-28	88.57	uncharacterized protein LOC111434088 OS=Cucurbita moschata OX=3662 GN=LOC1114340...	[more]
A0A6J1HJT1	1.1e-26	80.00	uncharacterized protein LOC111464225 OS=Cucurbita moschata OX=3662 GN=LOC1114642...	[more]

BLAST of CmoCh16G012720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 14..40 e-value: 1.8E-12 score: 46.7
None	No IPR available	PANTHER	PTHR35317:SF13	ZINC FINGER, CCHC-TYPE-RELATED	coord: 3..72
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 3..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012720.1	CmoCh16G012720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding