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CmoCh16G012620 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTTGTATTTCTGTATTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCCGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGGTATTCACGAGGTGATTTTTTGTGCATAATGTAGTTGGTGAAGTATGGAATACGAAATTCGGGCTCATTTCTGTTCTTTCCAAACGATTTAGTTAATTTTATTTCTAGGAATATTCGATTTATGCCTAACTTTCATATGCTTTCCTTACCGCGCCGAATGCAAGAGTTAGCCTACGTTACTTGATCTCTGCCTCTCGCAATTTCTATATAGTTTTCTTCATCTGCATCACAAACTTTTAGCCTACGAATGGGGGCATTCATTCCGGTGATGAATCACTGAAAATTTAGGACTCGTTGTAGATCAATGAAATTGGAATGGAAAATTATTTTTAATATATAGCGGTACTCATGTTATGCACCTAGCTATCAATAGAAATGCTTATGAATGATGAAAGTTATATAAACATCCAACATGGAAAATATTCATAAAAGAAAATTAAATTAGAAAGAACCGTGCATGAGTGTTTGTCTACCTTGTTACGTGGAACTTTGCTGGTCCTCTTATTTCTTTGGGTGGCTTGAGAATTTGAAATGTAAGGACTAGAAACACCGCCTTCCTCTCAAAGTGGATGCTTGCGTGAAGAGAAACCCTTTAGAAGAGGCTTAATCAAGTAAATATGCGATTGGCAATCTTTGGTGGAACTTTAGGTTCTAGAGTTGACATTGATAAAATATGAGATTTCTTTTATCAGTGTCCTTTTAAAGAATGGCAATGGTCGTAGGACATTAATGAAATCTGCCAATTTCCAGCTGAATAGTAAAGAAGGCTGGTTAGATAAACCCTTTTTCTTTGGTTTGGGGAGGAGAAGTCTCGGTTCTTCCTTTGGGATATGGCATACAAGAGCCTAAACACTTGTGACATGACTTACAAGAACCTTTCCATGGCTTTATCTCCTTCGCTTACCCTGCATATCTAATGAAGAAATATTGGACTATCTTTTTACTCAATTAGCAACATGTTGCACAAAAGGTTTACATGTGATTCTATGATGAACCCCATTTTTTCTTTTTTTCTTTTCTTTTTGGATAGGAATCAATTTCACGGACCTAATGAAATGATACAAATAGGTAAACCATCCAAAGAGATTGCAACAGATTTCTGGAGTTGGATGAGAGAATTTAAGAGGTAGCTATTAAAAGGAACCATATTTTTACACCAACAAAGAGCTATATGAAACAATAGGCTTCTAGGACTTTAAGTGTAGAGTTTCTTTGTCTAAAAAATCCTCGAGTTCAATCCATTCCAAATCTTCCAAATAACCGGCCTCACAATGAATGACCAAATGATATTCTCTGTCGACTTGATGGATGATCCATCAGATGCAAATTTAGCCAATCAAGAGTTTCAAGGACTAATTTCCTAAATCAGTACTCCTTTGAGATAGGCGCTAACACTCCTCCTAAGTGATTAAGCATGTTGGCCAAATCAAAATTCTTTCCTACAATTAAACATCCCGGTTTCTTGTTCTTCTTTGACATTCTCAGTGGCAGATGATAAAAAATAGAGGTGGTGGAAGTTGAAGATACCAAAGGTTCCCTAACTACTAAAGTATTGTAGTGATTCTTCTATTGTCGTCTCTCCCCTTTCCTTTGTGGCATCTTTTGAATGACATGCTAGGGTCTTGATAGAGGTTAAGTGTATTAACCCACTGAATTCAGAATATACGTTTTCAAAACATCTACATATTATGATTCTGTTTGTATCAAGTTTTACTTTGCTCTGGATAACTCTTGGTTTCTTCATTTAATGTGTTTATATCTAGAGACAAGTGTATTCATCTACTCGACTTTTCTACATGAATGGGACGGGCCTTTATGTACATTAGGAAATCTTCTAGAGTAATTTAACTTAGAATTCTGTGGCTTATGAATGACCTTTTCATGATCCTCTCTTTGCATCTTTGATGTGCAACTACTTACTAATGGTAAATCTATCATTCACCACCAAATCAGCTTTTTTCAAAATGTATATTGATATGTAACTACATAAGGATGCTCGTGGGAGGTGTAAGCAGAAGAAATTATGTACTCTACCTAGCCCATTTGTCAGAAAAGGTTATGTTTAATAAGTTCCACATCTATTAATCCTCATTTCGGTTAACGAACACACCTTTCTAACTTTGTCATAATCCAAACCCAGTCTCCCAGTTGTGTACCGAACAGATTCCTTTTCAGCCTAACGTCCCCCAAGTTCGGACTTCTTTCAAGCAATCAAACCAGTTATCTTCCTAGATTGAGATCCTAAGCCCATTCCCTATCGTATTAAGCAAACCATTTCGGACAAACCTGTACATCTAGCAAGAACAGGCCAGGGGCAGAAGGAAGACTAGGATACGTGGTTTCATTTGTTTTGCGAGTTCCAGGACTTCAAATTTTAGAAGTAGGAGTGTTATATAATCATACTTGTGAGTATAAAAATTCTTGTCATTATTTATTTGAAGCTGGAAATATCGATTATTAGGCGTTTTTACTATATATGTTTGTTTTTCCCTCTTCTGTCTTGGAAATTTAGGTTTAGGAGGACGTTCAACTTTCGATGAGTGGCACCTGATCTCATCCATTTTTGCATCATATTCATTATCATTCTGAAAGTCGATAGTCTTCTTAGTTAATATTTTCGTGTTTGGTTGTATTACATTACCCTTGCCTGATTTCCTTCTATTAATGTTGTTTTCATTAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGTCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAG TTTGTATTTCTGTATTTCTCACCCAACCAAATCCCCAAACTCATCGTCTATCAGCTTCTTCCTGGTTTCAGAGCTGAAGCAGAGCAGTGCTGCAAATCCATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCCGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGTCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAG ATGGAGCTTCTTTCACGCTGTTCTACTCTGATTCCTCATGCCTCCTCTCTCGGCCTTCTCAATTCTCATGGAAAACCGTCAAATTTCTATCCAAAGCTCAAATCCAGTCTCTCTTTTCCTTCGGCTTCATCCGTTCTCAAAACAACCGCTCGTAAGCCCTCGAGAACCCTAGCTACGTCCTGTTCTGTTCATATGACGGGTCCACAAACGCCGGATGCCGCTCAGAGAGGCGCCGAGACTGACGCCATGGGACTGCTTCTCAGGGAGAGGATTGTCTTCTTGGGGAACAGCATCGATGATTTTGTGGCTGATGCTATTATCAGTCAGCTTTTGCTCTTGGATGCGCAGGACTCTACTAAAGATATCAGACTTTTCATTAATTCCTCTGGCGGCTCTCTCAGTGCAACCATGGCTATCTACGATGTCGTACAGCTCGTGAGGGCCGATGTCTCTACTATTGCACTAGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTCTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGGCAAGCAATAGACGTGGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACATTACAAGAATCATCTCCGAGTTCACTGGTCATCCATTCGAAAAGGTCCAAAAAGATATCGATAGGGATCGTTATATGTCCCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAGGACAGCATTATACCTCTCGTGCCAGTGCCAGAACGAGTGAAGGCAAGTTTAAATTATATAGAAATTAGCAAAGATCCCAAAAAATTCTTGTCACCAGATGTCCCCGACGACGAGATATACTAG MELLSRCSTLIPHASSLGLLNSHGKPSNFYPKLKSSLSFPSASSVLKTTARKPSRTLATSCSVHMTGPQTPDAAQRGAETDAMGLLLRERIVFLGNSIDDFVADAIISQLLLLDAQDSTKDIRLFINSSGGSLSATMAIYDVVQLVRADVSTIALGIAASTASIILGGGTKGKRLAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNITRIISEFTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDSIIPLVPVPERVKASLNYIEISKDPKKFLSPDVPDDEIY Homology
BLAST of CmoCh16G012620 vs. ExPASy Swiss-Prot
Match: Q94B60 (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPP4 PE=1 SV=1) HSP 1 Score: 368.6 bits (945), Expect = 6.5e-101 Identity = 209/301 (69.44%), Postives = 238/301 (79.07%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy Swiss-Prot
Match: Q3ANI8 (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) OX=110662 GN=clpP1 PE=3 SV=2) HSP 1 Score: 213.0 bits (541), Expect = 4.5e-54 Identity = 104/187 (55.61%), Postives = 141/187 (75.40%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy Swiss-Prot
Match: Q3B0U1 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpP2 PE=3 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.0e-53 Identity = 103/187 (55.08%), Postives = 140/187 (74.87%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy Swiss-Prot
Match: Q7V992 (ATP-dependent Clp protease proteolytic subunit 1 OS=Prochlorococcus marinus (strain MIT 9313) OX=74547 GN=clpP1 PE=3 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 6.6e-53 Identity = 103/187 (55.08%), Postives = 139/187 (74.33%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy Swiss-Prot
Match: O34125 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpP2 PE=3 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 1.5e-52 Identity = 103/191 (53.93%), Postives = 143/191 (74.87%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy TrEMBL
Match: A0A6J1EC18 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita moschata OX=3662 GN=LOC111431188 PE=3 SV=1) HSP 1 Score: 560.5 bits (1443), Expect = 4.3e-156 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy TrEMBL
Match: A0A6J1HNH6 (ATP-dependent Clp protease proteolytic subunit OS=Cucurbita maxima OX=3661 GN=LOC111465249 PE=3 SV=1) HSP 1 Score: 553.1 bits (1424), Expect = 6.8e-154 Identity = 290/294 (98.64%), Postives = 291/294 (98.98%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy TrEMBL
Match: A0A6J1CWB9 (ATP-dependent Clp protease proteolytic subunit OS=Momordica charantia OX=3673 GN=LOC111014827 PE=3 SV=1) HSP 1 Score: 521.5 bits (1342), Expect = 2.2e-144 Identity = 274/294 (93.20%), Postives = 281/294 (95.58%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy TrEMBL
Match: A0A1S3BJF4 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103490719 PE=3 SV=1) HSP 1 Score: 520.4 bits (1339), Expect = 4.9e-144 Identity = 274/294 (93.20%), Postives = 285/294 (96.94%), Query Frame = 0
BLAST of CmoCh16G012620 vs. ExPASy TrEMBL
Match: A0A0A0L3S1 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_3G005040 PE=3 SV=1) HSP 1 Score: 497.3 bits (1279), Expect = 4.5e-137 Identity = 260/294 (88.44%), Postives = 276/294 (93.88%), Query Frame = 0
BLAST of CmoCh16G012620 vs. TAIR 10
Match: AT5G45390.1 (CLP protease P4 ) HSP 1 Score: 368.6 bits (945), Expect = 4.6e-102 Identity = 209/301 (69.44%), Postives = 238/301 (79.07%), Query Frame = 0
BLAST of CmoCh16G012620 vs. TAIR 10
Match: AT1G66670.1 (CLP protease proteolytic subunit 3 ) HSP 1 Score: 198.7 bits (504), Expect = 6.3e-51 Identity = 106/224 (47.32%), Postives = 153/224 (68.30%), Query Frame = 0
BLAST of CmoCh16G012620 vs. TAIR 10
Match: AT1G02560.1 (nuclear encoded CLP protease 5 ) HSP 1 Score: 179.5 bits (454), Expect = 4.0e-45 Identity = 87/167 (52.10%), Postives = 124/167 (74.25%), Query Frame = 0
BLAST of CmoCh16G012620 vs. TAIR 10
Match: AT5G23140.1 (nuclear-encoded CLP protease P7 ) HSP 1 Score: 156.0 bits (393), Expect = 4.7e-38 Identity = 81/215 (37.67%), Postives = 136/215 (63.26%), Query Frame = 0
BLAST of CmoCh16G012620 vs. TAIR 10
Match: AT1G11750.1 (CLP protease proteolytic subunit 6 ) HSP 1 Score: 155.2 bits (391), Expect = 8.0e-38 Identity = 87/229 (37.99%), Postives = 131/229 (57.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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