CmoCh16G012530 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Location	Cmo_Chr16: 8933254 .. 8934851 (+)
RNA-Seq Expression	CmoCh16G012530
Synteny	CmoCh16G012530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGGTTAGTGCAGCCTTCCTTTGTTTCTTTTCCCTCTTATTTTAAAGCAATTTGCCCTTTGTCGGTTAAATTACATCGTCTTCTTCCCCATTGCAGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACTGCACGAAAGCTCATAATCTTTAATGGAGAGCTCGACCGCATTAGATCCGGCTGTATCCTTTTATCATCTTTTCTATTATCGAACGAAGAGTGGGCTTGGGATCAACTTTTAAAACGGTAAAAATGACATTATGTGGTTTCTGAAATTTAAGAAAAATGTCAAAATCTTAATTTTTTTTCATTTAATTGGTTCATGAACGAAACTCTAACGTATAAACTTTCAACTTTGCGTCTAAAACTTTCAACTTTGCGTCTAATAAATCTCTAGGGCATATTTTTTAAAATTTATAAGACCTATATTAGTCTATTGAATTTAGTAGCTTGGAATGATTTAGTCTCATAACTCGATTTTGGTACTCTTAAATTTGTAATGATATAATTCTCAACTTTAATATGCAACAATTTATTACTGCTTATTTTATAATTTGTAATGATCCTAAATTGTTAATTGTTCATGTTTCCGATCAAAGTTGAAAGACTTGTAAGTCCTTTTTAATCCTCTTTTACTTCATAAAATGAGATGAATTTTCCCATGACAGGTTGGTGGGTTGTAATTCCACAGTTCTCCTTTATTATTATTATTATTATTTTGTGTTTGTTATGTGACTGGACCTTGATAGAGTAAAGATTATCCGCCATTTTTCTACCCGAAGCTGGCGGCACTTACGAAGACTCTCTTCCCCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGGTTTCACATGACACTTTCTTTTAAATCCTGCCAGTCCGATGATGATTCTTCCATAATTATATTCAATTATTGTATTTCCCGTTTGTTATGATGGTAATGAAGGTGCTACCCAGGTCCTTGGAAAGTCCTTAGAAAAGTGAGGAATAAATTCGTCTGTGTTCATCAGCAACAGGACATGCCTTCTCTCAAGGAAGTCGCTTTAAACATTCTTCCATCATCTTGAGGTTACGTAACTTCTCCACTAATGAACTCTTACTTCACAATCATCTCACCCACATTCCATAAACTTTTCTTTTTTTGTTCTATAGTTTCAGAAATCAAGCTTATAAAAGTTACTGATGTATATTTGGTTTATTTATAAATATAATAATTTCAAGATGGCCGAGAATGCTCGACTTATCAATTTATCCGGTAAACTACTAGGAGCTCATGTAGCCCGTTAAGATAAATTGCAAAAACAAAAATAATCTTTTCTATATTGAACGAGGATTATTTGGTTTAACTGCATATGTATTGAGCGAACTACATCTTTTTTTTTTTTTTTTTGGCAGGTCTTATTAGTCGATATTACCCTTCATTTTCATGCCAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAA

mRNA sequence

ATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACTGCACGAAAGCTCATAATCTTTAATGGAGAGCTCGACCGCATTAGATCCGGCTATTATCCGCCATTTTTCTACCCGAAGCTGGCGGCACTTACGAAGACTCTCTTCCCCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGATGGCCGAGAATGCTCGACTTATCAATTTATCCGGTCTTATTAGTCGATATTACCCTTCATTTTCATGCCAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAA

Coding sequence (CDS)

ATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAACACTGCACGAAAGCTCATAATCTTTAATGGAGAGCTCGACCGCATTAGATCCGGCTATTATCCGCCATTTTTCTACCCGAAGCTGGCGGCACTTACGAAGACTCTCTTCCCCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGATGGCCGAGAATGCTCGACTTATCAATTTATCCGGTCTTATTAGTCGATATTACCCTTCATTTTCATGCCAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAA

Protein sequence

MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFRWPRMLDLSIYPVLLVDITLHFHAKRIICLLASKSFLVNATSS

Homology

[Close]

BLAST of CmoCh16G012530 vs. ExPASy TrEMBL
Match: A0A6J1E988 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111431057 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 3.4e-47
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF 60
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF
Sbjct: 192 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF 251

Query: 61  FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 96
           FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Sbjct: 252 FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 286

[Close]

BLAST of CmoCh16G012530 vs. ExPASy TrEMBL
Match: A0A6J1HNL5 (protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111465233 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 9.9e-47
Identity = 94/95 (98.95%), Postives = 94/95 (98.95%), Query Frame = 0


Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF 60
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGELDRIRSGYYPPF
Sbjct: 192 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTTRKLIIFNGELDRIRSGYYPPF 251

Query: 61  FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 96
           FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Sbjct: 252 FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 286

[Close]

BLAST of CmoCh16G012530 vs. ExPASy TrEMBL
Match: A0A1S3BKQ4 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF 60
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYPPF
Sbjct: 193 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGELDRIRSGYYPPF 252

Query: 61  FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 96
           FYPKLAAL KTLFPKMETVYYIHNFKGQKGGVLFR
Sbjct: 253 FYPKLAALMKTLFPKMETVYYIHNFKGQKGGVLFR 287

[Close]

BLAST of CmoCh16G012530 vs. ExPASy TrEMBL
Match: A0A1S4DXY8 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF 60
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYPPF
Sbjct: 160 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGELDRIRSGYYPPF 219

Query: 61  FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 96
           FYPKLAAL KTLFPKMETVYYIHNFKGQKGGVLFR
Sbjct: 220 FYPKLAALMKTLFPKMETVYYIHNFKGQKGGVLFR 254

[Close]

BLAST of CmoCh16G012530 vs. ExPASy TrEMBL
Match: A0A1S3BK29 (protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490732 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.9e-45
Identity = 92/95 (96.84%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF 60
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYPPF
Sbjct: 204 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVQNTTRKLIIFNGELDRIRSGYYPPF 263

Query: 61  FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 96
           FYPKLAAL KTLFPKMETVYYIHNFKGQKGGVLFR
Sbjct: 264 FYPKLAALMKTLFPKMETVYYIHNFKGQKGGVLFR 298

[Close]

BLAST of CmoCh16G012530 vs. TAIR 10
Match: AT5G48790.1 (Domain of unknown function (DUF1995) )

HSP 1 Score: 188.3 bits (477), Expect = 4.0e-48
Identity = 91/95 (95.79%), Postives = 91/95 (95.79%), Query Frame = 0


Query: 1   MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPF 60
           MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYP F
Sbjct: 183 MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVVNTDRKLIIFNGELDRIRSGYYPKF 242

Query: 61  FYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR 96
           FYPKLAALTKTL PKMETVYYIHNFKGQKGGVLFR
Sbjct: 243 FYPKLAALTKTLLPKMETVYYIHNFKGQKGGVLFR 277

The following BLAST results are available for this feature:

BLAST of CmoCh16G012530 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G012530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E988	3.4e-47	100.00	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HNL5	9.9e-47	98.95	protein LOW PSII ACCUMULATION 3, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3BKQ4	1.9e-45	96.84	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 OS=Cucumis melo OX=365...	[more]
A0A1S4DXY8	1.9e-45	96.84	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X3 OS=Cucumis melo OX=365...	[more]
A0A1S3BK29	1.9e-45	96.84	protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 OS=Cucumis melo OX=365...	[more]

BLAST of CmoCh16G012530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48790.1	4.0e-48	95.79	Domain of unknown function (DUF1995)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018962	Domain of unknown function DUF1995	PFAM	PF09353	DUF1995	coord: 7..95 e-value: 4.4E-13 score: 49.7
IPR044687	Protein LOW PSII ACCUMULATION 3	PANTHER	PTHR34051	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC	coord: 1..95
None	No IPR available	PANTHER	PTHR34051:SF1	PROTEIN LOW PSII ACCUMULATION 3, CHLOROPLASTIC ISOFORM X1	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012530.1	CmoCh16G012530.1	mRNA