CmoCh16G012160 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012160
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich cell wall structural protein 1.8-like
Location	Cmo_Chr16: 8702840 .. 8703607 (+)
RNA-Seq Expression	CmoCh16G012160
Synteny	CmoCh16G012160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAGGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGTTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGGTCATGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATTTCAAACAAGAATTGA

mRNA sequence

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAGGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGTTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGGTCATGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATTTCAAACAAGAATTGA

Coding sequence (CDS)

ATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACGGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGACGGTGGGTATGGAAGGGGAGACGGAGTAGGAGGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGTTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGGTCATGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATTTCAAACAAGAATTGA

Protein sequence

MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYALTNSISNKN

Homology

[Close]

BLAST of CmoCh16G012160 vs. ExPASy Swiss-Prot
Match: P10496 (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.6e-09
Identity = 120/260 (46.15%), Postives = 135/260 (51.92%), Query Frame = 0


Query: 3   ITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGG 62
           I R+  L FL+L+ LG+ SA R LL  D      GY       G+ +G        +YGG
Sbjct: 4   IHRLPSLVFLVLLALGVCSARRALLTLDA-----GYGL-----GHGTGGGYGGAAGSYGG 63

Query: 63  RSGGGYGDGSSALG-----GSGYGSGGVRGSGYGNGG--GNAYGGGVSSGVGGAGYGSGS 122
             GGG G G    G     G G GSGG +G G G GG  G  YGGG     GG+G G G 
Sbjct: 64  GGGGGSGGGGGYAGEHGVVGYGGGSGGGQGGGVGYGGDQGAGYGGG-----GGSGGGGGV 123

Query: 123 RYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGY----GDSH 182
            YGGG + G GY GG+ G    G  GGYG G +H IGYG   G+G G G GY        
Sbjct: 124 AYGGGGERG-GYGGGQGG----GAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAGGAQGG 183

Query: 183 GYGNGGGV-DGGYGRGDGVGGHAGGSGI--GAGGGYGG---HAGGSGIGAGGAYGSGGGH 242
           GYG GGG   GG G GD  GG+ GG G   GAGGGYGG   H GG G G GG  G G G 
Sbjct: 184 GYGTGGGAGGGGGGGGDHGGGYGGGQGAGGGAGGGYGGGGEHGGGGGGGQGGGAGGGYGA 243

Query: 243 GGEHDNSKGSGEEGGYDGGY 246
           GGEH    G G+ GG  GGY
Sbjct: 244 GGEHGGGAGGGQGGGAGGGY 243

[Close]

BLAST of CmoCh16G012160 vs. ExPASy Swiss-Prot
Match: P10495 (Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.4e-05
Identity = 120/268 (44.78%), Postives = 137/268 (51.12%), Query Frame = 0


Query: 1   MAITRVLCLSFL-LLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNA 60
           MA ++VL  + L + V  G+ SAARTLL  +        DR N   G   G     Y   
Sbjct: 1   MATSKVLLSNVLFVFVCFGICSAARTLLTLE--------DRVNLHVGTVVG----GYGG- 60

Query: 61  YGGRSGGGYGDGSSALGGSGYGSG-----------GVRGSGYGNGGGNAYGGGVSSGVGG 120
            GG SGGG G  +  LGG GYG G           G  G G+G GGGN  GGG   G  G
Sbjct: 61  -GGGSGGGGGGAAVELGGGGYGEGAGGGEGAGAGYGAAGGGHGGGGGN--GGGGGGGADG 120

Query: 121 AGYGSGSRYGGGEDHGVGYAGGRSGGY-ENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGY 180
            GYG G+  GGGE +G G A G  GGY   GG+GG G G     G G   G G+G G GY
Sbjct: 121 GGYGGGAGKGGGEGYGGGGANG--GGYGGGGGSGGGGGGGAGGAGSGYGGGEGSGAGGGY 180

Query: 181 GDSH---GYGNGGGVDGGYG--RGDGVGGHAGGSGIGAGGGYGGHAG-----GSGIGAGG 240
           G ++   G GNGGG  GG G   G G  G   G+G GAGGGYGG A      GSG G GG
Sbjct: 181 GGANGGGGGGNGGGGGGGSGGAHGGGAAGGGEGAGQGAGGGYGGGAAGGGGRGSGGGGGG 240

Query: 241 AYGSGGGHGGEHDNSKGSGEEGGYDGGY 246
            YG GG  G  +    GSGE GG+ GGY
Sbjct: 241 GYGGGGARGSGYGGGGGSGEGGGHGGGY 250

[Close]

BLAST of CmoCh16G012160 vs. ExPASy Swiss-Prot
Match: Q9SIH2 (Glycine-rich protein DOT1 OS=Arabidopsis thaliana OX=3702 GN=DOT1 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04
Identity = 108/250 (43.20%), Postives = 120/250 (48.00%), Query Frame = 0


Query: 14  LVGLGLASAARTLL---DYDPRTRHYGYDR-------------PNPREGYDSGHRDESYD 73
           L+GLGL SA R LL   + +     YG +              P    GY  G  +    
Sbjct: 13  LIGLGLCSARRALLSSSESEAEVAAYGVNSGLSAGLGVGIGGGPGGGSGYGGGSGEGGGA 72

Query: 74  NAYGG---RSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYG-- 133
             +G      GGG G G  A GG G G GG  G G G GGG  YGGG + G GG G G  
Sbjct: 73  GGHGEGHIGGGGGGGHGGGAGGGGGGGPGGGYGGGSGEGGGAGYGGGEAGGHGGGGGGGA 132

Query: 134 SGSRYGGGEDHGVGYAGGR----SGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYG 193
            G   GGG  HG GY GG+     GGY  GG GG+G G       G  NG G G G+G G
Sbjct: 133 GGGGGGGGGAHGGGYGGGQGAGAGGGYGGGGAGGHGGGG------GGGNGGGGGGGSGEG 192

Query: 194 DSH--GYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHG 237
            +H  GYG GGG   GYG G G GGH GG G G GG  GG  GG G  A   YG GGG G
Sbjct: 193 GAHGGGYGAGGGAGEGYGGGAGAGGHGGGGG-GGGGSGGGGGGGGGYAAASGYGHGGGAG 251

[Close]

BLAST of CmoCh16G012160 vs. ExPASy Swiss-Prot
Match: P0C5C7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.3e-04
Identity = 101/230 (43.91%), Postives = 113/230 (49.13%), Query Frame = 0


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA T+ L L+ L+L+ +G+ ++ARTLL Y P                             
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGYGPG---------------------------- 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG  GGG G+G    GG GYG     GSGYG+G G   GGG S G  G GYG G   GGG
Sbjct: 61  GGGGGGGGGEG----GGGGYG-----GSGYGSGSGYGEGGG-SGGAAGGGYGRGGGGGGG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
              G    GG   GY +G   GYG G     GYGS  G G G G G G   GYG G G  
Sbjct: 121 GGEG----GGSGSGYGSGQGSGYGAGVGGAGGYGSGGGGGGGQGGGAG---GYGQGSGYG 180

Query: 181 GGYGRGDGVGGHAGGSGI-GAGGGYGGHAGGSGIGAGGAYGSGGGHGGEH 230
            GYG G G G H GG G  G GGG GG  GGSG G+G  YGSG G G  H
Sbjct: 181 SGYGSGAG-GAHGGGYGSGGGGGGGGGQGGGSGSGSGSGYGSGSGGGNGH 184

[Close]

BLAST of CmoCh16G012160 vs. ExPASy Swiss-Prot
Match: A3C5A7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 8.3e-04
Identity = 101/230 (43.91%), Postives = 113/230 (49.13%), Query Frame = 0


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MA T+ L L+ L+L+ +G+ ++ARTLL Y P                             
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGYGPG---------------------------- 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GG  GGG G+G    GG GYG     GSGYG+G G   GGG S G  G GYG G   GGG
Sbjct: 61  GGGGGGGGGEG----GGGGYG-----GSGYGSGSGYGEGGG-SGGAAGGGYGRGGGGGGG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
              G    GG   GY +G   GYG G     GYGS  G G G G G G   GYG G G  
Sbjct: 121 GGEG----GGSGSGYGSGQGSGYGAGVGGAGGYGSGGGGGGGQGGGAG---GYGQGSGYG 180

Query: 181 GGYGRGDGVGGHAGGSGI-GAGGGYGGHAGGSGIGAGGAYGSGGGHGGEH 230
            GYG G G G H GG G  G GGG GG  GGSG G+G  YGSG G G  H
Sbjct: 181 SGYGSGAG-GAHGGGYGSGGGGGGGGGQGGGSGSGSGSGYGSGSGGGNGH 184

[Close]

BLAST of CmoCh16G012160 vs. ExPASy TrEMBL
Match: A0A6J1E5N6 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662 GN=LOC111430999 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.6e-114
Identity = 253/255 (99.22%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
           EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD
Sbjct: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180

Query: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240
           GGYGRGDGVG HAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGG HGGEHDNSKGSGEEGG
Sbjct: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240

Query: 241 YDGGYALTNSISNKN 256
           YDGGYALTNSISNKN
Sbjct: 241 YDGGYALTNSISNKN 255

[Close]

BLAST of CmoCh16G012160 vs. ExPASy TrEMBL
Match: A0A6J1E6B7 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662 GN=LOC111430998 PE=4 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.1e-112
Identity = 251/255 (98.43%), Postives = 251/255 (98.43%), Query Frame = 0


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GGRSGGGYGD SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG
Sbjct: 61  GGRSGGGYGDRSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
           EDHGVGY GGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD
Sbjct: 121 EDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180

Query: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240
           GGYGRGDGVG HAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGG HGGEHDNSKGSGEEGG
Sbjct: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG 240

Query: 241 YDGGYALTNSISNKN 256
           YDGGYALTNSISNKN
Sbjct: 241 YDGGYALTNSISNKN 255

[Close]

BLAST of CmoCh16G012160 vs. ExPASy TrEMBL
Match: A0A6J1E700 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662 GN=LOC111431185 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.9e-112
Identity = 255/270 (94.44%), Postives = 255/270 (94.44%), Query Frame = 0


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY
Sbjct: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG
Sbjct: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
           EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD
Sbjct: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180

Query: 181 GGYGRGDGV---------------GGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGH 240
           GGYGRGDGV               GGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGH
Sbjct: 181 GGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGH 240

Query: 241 GGEHDNSKGSGEEGGYDGGYALTNSISNKN 256
           GGEHDNSKGSGEEGGYDGGYALTNSISNKN
Sbjct: 241 GGEHDNSKGSGEEGGYDGGYALTNSISNKN 270

[Close]

BLAST of CmoCh16G012160 vs. ExPASy TrEMBL
Match: A0A6J1L118 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111500189 PE=4 SV=1)

HSP 1 Score: 411.4 bits (1056), Expect = 2.8e-111
Identity = 249/255 (97.65%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAITRVLCL+FLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY
Sbjct: 1   MAITRVLCLTFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GGRSGG YG   SALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG
Sbjct: 61  GGRSGGEYGVRGSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
           EDHGVGY GGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD
Sbjct: 121 EDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180

Query: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240
           GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG
Sbjct: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240

Query: 241 YDGGYALTNSISNKN 256
           YDGGYALTNSISNKN
Sbjct: 241 YDGGYALTNSISNKN 255

[Close]

BLAST of CmoCh16G012160 vs. ExPASy TrEMBL
Match: A0A6J1HQH3 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111465170 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.6e-111
Identity = 248/255 (97.25%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAITRVLCLSFLLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60
           MAITRVLCL+FLLL+GLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY
Sbjct: 1   MAITRVLCLTFLLLIGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAY 60

Query: 61  GGRSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120
           GGRSGG YG G SALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG
Sbjct: 61  GGRSGGEYGVGGSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGG 120

Query: 121 EDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYGDSHGYGNGGGVD 180
           EDHGVGY GGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGN NGYGDSHGYGNGGGVD
Sbjct: 121 EDHGVGYGGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNRNGYGDSHGYGNGGGVD 180

Query: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240
           GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG
Sbjct: 181 GGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG 240

Query: 241 YDGGYALTNSISNKN 256
           YDGGYALTNSISNKN
Sbjct: 241 YDGGYALTNSISNKN 255

[Close]

BLAST of CmoCh16G012160 vs. TAIR 10
Match: AT5G46730.1 (glycine-rich protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 108/253 (42.69%), Postives = 127/253 (50.20%), Query Frame = 0


Query: 11  FLLLVGLGLASA-ARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYG 70
           F L++G+ +  A +R LL+Y   +   G+       G  SG         YGG SGGGYG
Sbjct: 11  FFLILGVSICYATSRNLLNYGQASGGGGHGGGGGSGGVSSG--------GYGGESGGGYG 70

Query: 71  DGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHG---VG 130
            GS    G GYG       GY +GGG+ +GGG        GY SG+  GGG  +G    G
Sbjct: 71  GGSGEGAGGGYGG----AEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGGGYGGAAGG 130

Query: 131 YAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGN------------GNGNGYGDSHGYG 190
           +AGG  GG   GG   YG G +H  GYG+  G G             G G G+G   G G
Sbjct: 131 HAGGGGGGSGGGGGSAYGAGGEHASGYGNGAGEGGGAGASGYGGGAYGGGGGHGGGGGGG 190

Query: 191 NGGGVDGGYGRGDGVGGHAGGSGI-GAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSK 247
           + GG  GG G G G GG AGG G  G  GGYGG  GG G G GGAYG GG HGG +    
Sbjct: 191 SAGGAHGGSGYGGGEGGGAGGGGSHGGAGGYGG-GGGGGSGGGGAYGGGGAHGGGY--GS 248

[Close]

BLAST of CmoCh16G012160 vs. TAIR 10
Match: AT5G46730.2 (glycine-rich protein )

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-08
Identity = 109/248 (43.95%), Postives = 127/248 (51.21%), Query Frame = 0


Query: 11  FLLLVGLGLASA-ARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYG 70
           F L++G+ +  A +R LL+Y   +   G+       G  SG         YGG SGGGYG
Sbjct: 11  FFLILGVSICYATSRNLLNYGQASGGGGHGGGGGSGGVSSG--------GYGGESGGGYG 70

Query: 71  DGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHG---VG 130
            GS    G GYG       GY +GGG+ +GGG        GY SG+  GGG  +G    G
Sbjct: 71  GGSGEGAGGGYGG----AEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGGGYGGAAGG 130

Query: 131 YAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNG-NGYGDSHGYGNGGGVDGGYGR 190
           +AGG  GG   GG   YG G +H  GYG+  G G G G +GYG    YG GGG  GG G 
Sbjct: 131 HAGGGGGGSGGGGGSAYGAGGEHASGYGNGAGEGGGAGASGYGGG-AYGGGGGHGGGGGG 190

Query: 191 GDGVGGHAG---GSGIGAGGGY-GGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGG- 247
           G   G H G   GSG G GGGY GG AGG G G GG  G GG +GGEH    G G  GG 
Sbjct: 191 GSAGGAHGGSGYGSGGGEGGGYGGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGG 245

[Close]

BLAST of CmoCh16G012160 vs. TAIR 10
Match: AT2G36120.1 (Glycine-rich protein family )

HSP 1 Score: 48.5 bits (114), Expect = 9.1e-06
Identity = 108/250 (43.20%), Postives = 120/250 (48.00%), Query Frame = 0


Query: 14  LVGLGLASAARTLL---DYDPRTRHYGYDR-------------PNPREGYDSGHRDESYD 73
           L+GLGL SA R LL   + +     YG +              P    GY  G  +    
Sbjct: 13  LIGLGLCSARRALLSSSESEAEVAAYGVNSGLSAGLGVGIGGGPGGGSGYGGGSGEGGGA 72

Query: 74  NAYGG---RSGGGYGDGSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYG-- 133
             +G      GGG G G  A GG G G GG  G G G GGG  YGGG + G GG G G  
Sbjct: 73  GGHGEGHIGGGGGGGHGGGAGGGGGGGPGGGYGGGSGEGGGAGYGGGEAGGHGGGGGGGA 132

Query: 134 SGSRYGGGEDHGVGYAGGR----SGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGYG 193
            G   GGG  HG GY GG+     GGY  GG GG+G G       G  NG G G G+G G
Sbjct: 133 GGGGGGGGGAHGGGYGGGQGAGAGGGYGGGGAGGHGGGG------GGGNGGGGGGGSGEG 192

Query: 194 DSH--GYGNGGGVDGGYGRGDGVGGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHG 237
            +H  GYG GGG   GYG G G GGH GG G G GG  GG  GG G  A   YG GGG G
Sbjct: 193 GAHGGGYGAGGGAGEGYGGGAGAGGHGGGGG-GGGGSGGGGGGGGGYAAASGYGHGGGAG 251

The following BLAST results are available for this feature:

BLAST of CmoCh16G012160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10496	8.6e-09	46.15	Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2...	[more]
P10495	4.4e-05	44.78	Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2...	[more]
Q9SIH2	1.3e-04	43.20	Glycine-rich protein DOT1 OS=Arabidopsis thaliana OX=3702 GN=DOT1 PE=2 SV=1	[more]
P0C5C7	8.3e-04	43.91	Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=399...	[more]
A3C5A7	8.3e-04	43.91	Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of CmoCh16G012160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5N6	4.6e-114	99.22	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1E6B7	1.1e-112	98.43	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1E700	1.9e-112	94.44	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1L118	2.8e-111	97.65	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HQH3	3.6e-111	97.25	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CmoCh16G012160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46730.1	1.8e-09	42.69	glycine-rich protein	[more]
AT5G46730.2	1.5e-08	43.95	glycine-rich protein	[more]
AT2G36120.1	9.1e-06	43.20	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 201..219 score: 43.42 coord: 126..141 score: 46.09 coord: 4..20 score: 35.29 coord: 156..166 score: 38.64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012160.1	CmoCh16G012160.1	mRNA