CmoCh16G012130 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich cell wall structural protein 1.8-like
Location	Cmo_Chr16: 8669729 .. 8672877 (-)
RNA-Seq Expression	CmoCh16G012130
Synteny	CmoCh16G012130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGTTACCCAAGATGACCTTTTCCTTACGGTTGAGGCTAATATGCGAACGTATGCATGTTTCGGGGAGGCCACATGTCGCAGATAGAAAAATGAGGGAAAAACCTAGTGTGTTGCCTCCGACTAGTCTCGAAGTGTAGATGAGCACACAATGAGTGGGACATGCGTCTTGTTTTTATAAGATATCTATAAATTCGTTTGGGATACGTATGCTAGGATTCAAAAAAAAGAATATCAAGGACTGTGCATTTGGACCCGCTCCTGCATGAAACCTTCATGTAAGAGTGTTTCCAATCGCATGTGATGCCTCTGAAGGGTTAGTTTTGCCCATTTGATTCGACCTTTATTTGACTGTTTAGTTTTGCCCATTTGATTCGACCTTTATTTGACTGTTTTCAATTCATTTTGAATAATAAACTTATTATAACTTGAATTAGGGTCCGCTAGTGAAATTCTGAAATTGTGGAGCACTGAGCAAGCGGGAAACAAGAGTGAGTAAGGCATGCACGACTAAGTAAGTAGCCATTTGAATTTTCTTGAGCAATACTTATATGAATCGCTAGAATGTGATAGCATGCAAATATGATCTACCATACATAGAAAAAAAATGCATGTCTAGGGTATAAAATTGAGCTAAGATTTTAAGTATGCTATATATGATACACACAAATATTTGAAATGTCTTTAAAATGAGATTTCTAATTTGTATATTGTGTGAGATGCTTTTGTTGTATTAGTTACTCTATACTAAGATTGAAATCTGTATTCAATGTGATTGATTGAATTATCTCACTATTGAGCTAACATGTATGTTTTGAGAATGAGATATGTACTCCAAGTGATGGATTGAGTTATCTTCCTATTAAGCATGCATGTACACTTTGAGAATGAGATTTGTAATCCAATGCTTAATTGAGTTATCTCCTTATTTGAGCATGCATGAATGTATTGAGTTAAGAATAAGACGCAGTTTGACGATTAACCTAGGTCAAGACACCTCTAGTAGACCGAGCACCCCAAGATCATTAGCGACGCAGTTTGACGATTAACCTAGGTCAAGACACCTCTAGTAGACCGAGCACCCCAAGATCATTAGCAATGACTAGAGGACTAGACCCTAGTGCTCTGAGAATCAAATTAATCCCAATGAGCTAGTCTAGTAAATCTGCGACGCTAGAAAATGCCTAGTGCTCTGAGAATCAAATTAATCCCAATGAGCTAGTCTAGTAAATCTGCGACGCTAGAAAATGCGAACAACTATCTGACTTTGATTGAGTTTGTGACACGCAAGAGAATGACTCAAGATTTCGAGGCCTCCTAGAAGTTCATATAGCGGTAGAATCTAAGCTTAAAATACCTAAAGTCAAATTACAACATATGAAACTTATACCCTTAGCTTTGTAAATATCAATGTCTACAAGTTTTATGAAGAAACCTCAAGACAAGACATAGAATGTTTGGACGAATCTCACTTTTAATCTCTCGTAGGTCGAAACGTGCAACTCTAACCATTTTGTATGGTAGACGATGATGACATGGTTGGTTCATTTGAACTAGACACCCATGATTCAACTTATCCCGTATCTCATCTTTCCACTATTCTAATTTGTTTTAGATCATTTTTACCATAGAAGAAAAAGATTACTTGAGAGCGTTCAGATTCTAAAATTTAATCTATAATGGACAAAGTAAATCACTCTCAATATCTTATGCTCTATGAGATTTTTTTTATTATTTTCTTTTTAATGCAAACATGATGAGATTTAATATCCTTAAAATGTGATGATTTATTCCACCATTATTGTACTCCAAATGAGAGATTATTTAATGTATTTGTTCAAGTGGGAATTAGGGAAACATGCATTAATGATATGTAAAAGATATTATCTTAATGCAATGTCGTTTCATAACCCATTTCATGTCTCAAATCTCATGGCGGCTCAAGTAAAAAAAGGGAAAAAGAACCCTAATTAAATATATGCTCTTTATGTAGTGGATTTTTATAGCCATTGTGAATTTAATCATACAAATATCTTCCTAAAACCAAATAAATTATCATGTTTCTTTGCTCTTTTTCTTAATCTTATCAAATCTTGCAAGATCGTGTTAATGGAAGATGAGATCAAAGCGTTACTTAAATATTCATATAATTTAGTTCAAATGCAACTTGTGAGCCAAATATGAGAAAAGGCACATTATAGTGCTTGCTTCATGGACATTTGTGGACGTGTATATCCAAATTATCTTCTTTTTTTTCTCCATGTGGCGCCCAAAATACCATTAAGCACACCCATGAGAAGATGATGAACCCTCCACCATTTCCTATATAAGATGACCAATGGATTCATTCTAGGCACCTCAAATTCTCTCCATGGCTATCACTAGAGTCTTGTGCCTTAGCTTTCTTCTCCTTGTAGGGCTGGGTTTAGCTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACAGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGATGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATTTCAAACAAGAATTGA

mRNA sequence

ATGGAGGAGTTACCCAAGATGACCTTTTCCTTACGGTTGAGGCTAATATGCGAACGGCTGGGTTTAGCTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACAGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGATGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATTTCAAACAAGAATTGA

Coding sequence (CDS)

ATGGAGGAGTTACCCAAGATGACCTTTTCCTTACGGTTGAGGCTAATATGCGAACGGCTGGGTTTAGCTTCCGCTGCCCGAACCCTTCTTGATTATGATCCCCGAACACGTCACTATGGTTACGATCGCCCTAACCCTAGAGAAGGGTACGATTCGGGGCATCGTGACGAATCCTATGATAATGCATATGGTGGAAGATCGGGTGGAGGATATGGAGACAGAAGCTCTGCTCTCGGAGGTTCAGGCTATGGAAGTGGTGGAGTAAGGGGTTCGGGATATGGTAACGGTGGAGGAAATGCATACGGAGGAGGGGTTAGCTCCGGCGTAGGAGGAGCAGGATATGGAAGTGGGAGTAGATATGGAGGTGGAGAAGATCATGGTGTTGGTTACGCTGGTGGGCGAAGTGGAGGTTATGAAAATGGAGGCAATGGTGGGTATGGGCAAGGAAGAGATCATGATATCGGCTATGGAAGTAGAAATGGAAATGGAAATGGAAATGGAAATGGAAATGGGTATGGAGATTCCCATGGATATGGAAATGGTGGAGGAGTCGATGGTGGGTATGGAAGGGGAGACGGAGTAGGAAGCCATGCTGGTGGTTCTGGCATTGGCGCCGGCGGTGGTTACGGAGGCCATGCTGGTGGCTCTGGAATTGGGGCCGGCGGAGCTTACGGCAGTGGAGGAGCTCACGGAGGAGAACATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGACGGTGGATATGCACTCACAAACTCCATTTCAAACAAGAATTGA

Protein sequence

MEELPKMTFSLRLRLICERLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDRSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTNSISNKN

Homology

[Close]

BLAST of CmoCh16G012130 vs. ExPASy Swiss-Prot
Match: P10496 (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-09
Identity = 122/298 (40.94%), Postives = 136/298 (45.64%), Query Frame = 0


Query: 1   MEELPKMTFSLRLRLICERLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYD 60
           +  LP + F     L+   LG+ SA R LL  D     YG        G   G    SY 
Sbjct: 4   IHRLPSLVF-----LVLLALGVCSARRALLTLD---AGYGLGHGT---GGGYGGAAGSYG 63

Query: 61  NAYGGRSGG-----------GYGDRSSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSG- 120
              GG SGG           GYG  S    G G G GG +G+GYG GGG+  GGGV+ G 
Sbjct: 64  GGGGGGSGGGGGYAGEHGVVGYGGGSGGGQGGGVGYGGDQGAGYGGGGGSGGGGGVAYGG 123

Query: 121 -------VGGAGYGSGSRYGGGEDHGVGYAGG----------------RSGGYENGG--N 180
                   GG G G+G  YG G +HG+GY GG                + GGY  GG   
Sbjct: 124 GGERGGYGGGQGGGAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAGGAQGGGYGTGGGAG 183

Query: 181 GGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGSH-----A 240
           GG G G DH  GYG   G G G G G G G  HG G GGG  GG G G G G        
Sbjct: 184 GGGGGGGDHGGGYGGGQGAGGGAGGGYGGGGEHGGGGGGGQGGGAGGGYGAGGEHGGGAG 243

Query: 241 GGSGIGAGGGY-------GGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGG 250
           GG G GAGGGY       GG  GG G GAGG YG+GG HGG     +G G  GGY  G
Sbjct: 244 GGQGGGAGGGYGAGGEHGGGAGGGQGGGAGGGYGAGGEHGGGAGGGQGGGAGGGYGAG 290

[Close]

BLAST of CmoCh16G012130 vs. ExPASy Swiss-Prot
Match: P10495 (Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-07
Identity = 118/255 (46.27%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 21  GLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDRSSALGG 80
           G+ SAARTLL  +        DR N   G   G     Y    GG SGGG G  +  LGG
Sbjct: 19  GICSAARTLLTLE--------DRVNLHVGTVVG----GYGG--GGGSGGGGGGAAVELGG 78

Query: 81  SGYGSG-----------GVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVG 140
            GYG G           G  G G+G GGGN  GGG   G  G GYG G+  GGGE +G G
Sbjct: 79  GGYGEGAGGGEGAGAGYGAAGGGHGGGGGN--GGGGGGGADGGGYGGGAGKGGGEGYGGG 138

Query: 141 YA--GGRSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGG 200
            A  GG  GG  +GG GG G G     G GS  G G G+G G GYG ++G G GGG  GG
Sbjct: 139 GANGGGYGGGGGSGGGGGGGAG-----GAGSGYGGGEGSGAGGGYGGANG-GGGGGNGGG 198

Query: 201 YGRGDGVGSHAG-------GSGIGAGGGYGGHAG-----GSGIGAGGAYGSGGAHGGEHD 251
            G G G G+H G       G+G GAGGGYGG A      GSG G GG YG GGA G  + 
Sbjct: 199 GGGGSG-GAHGGGAAGGGEGAGQGAGGGYGGGAAGGGGRGSGGGGGGGYGGGGARGSGYG 250

[Close]

BLAST of CmoCh16G012130 vs. ExPASy TrEMBL
Match: A0A6J1E6B7 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662 GN=LOC111430998 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.3e-107
Identity = 239/246 (97.15%), Postives = 240/246 (97.56%), Query Frame = 0


Query: 15  LICERLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDR 74
           L+   LGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDR
Sbjct: 12  LLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDR 71

Query: 75  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 134
           SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGY GGR
Sbjct: 72  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYGGGR 131

Query: 135 SGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV 194
           SGGYENGGNGGYGQGRDHDIGYGSR  NGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV
Sbjct: 132 SGGYENGGNGGYGQGRDHDIGYGSR--NGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV 191

Query: 195 GSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTN 254
           GSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTN
Sbjct: 192 GSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTN 251

Query: 255 SISNKN 261
           SISNKN
Sbjct: 252 SISNKN 255

[Close]

BLAST of CmoCh16G012130 vs. ExPASy TrEMBL
Match: A0A6J1E5N6 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662 GN=LOC111430999 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 7.3e-107
Identity = 239/246 (97.15%), Postives = 240/246 (97.56%), Query Frame = 0


Query: 15  LICERLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDR 74
           L+   LGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGD 
Sbjct: 12  LLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDG 71

Query: 75  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 134
           SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR
Sbjct: 72  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 131

Query: 135 SGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV 194
           SGGYENGGNGGYGQGRDHDIGYGSR  NGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV
Sbjct: 132 SGGYENGGNGGYGQGRDHDIGYGSR--NGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV 191

Query: 195 GSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTN 254
           GSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTN
Sbjct: 192 GSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTN 251

Query: 255 SISNKN 261
           SISNKN
Sbjct: 252 SISNKN 255

[Close]

BLAST of CmoCh16G012130 vs. ExPASy TrEMBL
Match: A0A6J1E6F7 (glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431141 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.3e-105
Identity = 241/267 (90.26%), Postives = 242/267 (90.64%), Query Frame = 0


Query: 15  LICERLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDR 74
           L+   LGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGD 
Sbjct: 12  LLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDG 71

Query: 75  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 134
           SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR
Sbjct: 72  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 131

Query: 135 SGG---------------------YENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYG 194
           SGG                     YENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYG
Sbjct: 132 SGGYENGGNGGYGQGRDHDIGYGSYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYG 191

Query: 195 DSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGE 254
           DSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGE
Sbjct: 192 DSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGE 251

Query: 255 HDNSKGSGEEGGYDGGYALTNSISNKN 261
           HDNSKGSGEEGGYDGGYALTNSISNKN
Sbjct: 252 HDNSKGSGEEGGYDGGYALTNSISNKN 278

[Close]

BLAST of CmoCh16G012130 vs. ExPASy TrEMBL
Match: A0A6J1E9N8 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431141 PE=4 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 4.0e-105
Identity = 241/269 (89.59%), Postives = 242/269 (89.96%), Query Frame = 0


Query: 15  LICERLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDR 74
           L+   LGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGD 
Sbjct: 12  LLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDG 71

Query: 75  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 134
           SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR
Sbjct: 72  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 131

Query: 135 -----------------------SGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNG 194
                                  SGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNG
Sbjct: 132 SGGYENGGNGGYGQGRDHDIGYGSGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNG 191

Query: 195 YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHG 254
           YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHG
Sbjct: 192 YGDSHGYGNGGGVDGGYGRGDGVGSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHG 251

Query: 255 GEHDNSKGSGEEGGYDGGYALTNSISNKN 261
           GEHDNSKGSGEEGGYDGGYALTNSISNKN
Sbjct: 252 GEHDNSKGSGEEGGYDGGYALTNSISNKN 280

[Close]

BLAST of CmoCh16G012130 vs. ExPASy TrEMBL
Match: A0A6J1L118 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111500189 PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 7.5e-104
Identity = 234/246 (95.12%), Postives = 235/246 (95.53%), Query Frame = 0


Query: 15  LICERLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDR 74
           L+   LGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGG YG R
Sbjct: 12  LLLVGLGLASAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGEYGVR 71

Query: 75  SSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYAGGR 134
            SALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGY GGR
Sbjct: 72  GSALGGSGYGSGGVRGSGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHGVGYGGGR 131

Query: 135 SGGYENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV 194
           SGGYENGGNGGYGQGRDHDIGYGSR  NGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV
Sbjct: 132 SGGYENGGNGGYGQGRDHDIGYGSR--NGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGV 191

Query: 195 GSHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYDGGYALTN 254
           G HAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGG HGGEHDNSKGSGEEGGYDGGYALTN
Sbjct: 192 GGHAGGSGIGAGGGYGGHAGGSGIGAGGAYGSGGGHGGEHDNSKGSGEEGGYDGGYALTN 251

Query: 255 SISNKN 261
           SISNKN
Sbjct: 252 SISNKN 255

[Close]

BLAST of CmoCh16G012130 vs. TAIR 10
Match: AT5G46730.1 (glycine-rich protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.4e-09
Identity = 107/244 (43.85%), Postives = 124/244 (50.82%), Query Frame = 0


Query: 24  SAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDRSSALGGSGY 83
           + +R LL+Y   +   G+       G  SG         YGG SGGGYG      GGSG 
Sbjct: 22  ATSRNLLNYGQASGGGGHGGGGGSGGVSSG--------GYGGESGGGYG------GGSGE 81

Query: 84  GSGGVRG--SGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHG---VGYAGGRSGGY 143
           G+GG  G   GY +GGG+ +GGG        GY SG+  GGG  +G    G+AGG  GG 
Sbjct: 82  GAGGGYGGAEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGGGYGGAAGGHAGGGGGGS 141

Query: 144 ENGGNGGYGQGRDHDIGYGSRNGNGNG----------NGNGNGYGDSHGYGNGGGVDGGY 203
             GG   YG G +H  GYG+  G G G           G G G+G   G G+ GG  GG 
Sbjct: 142 GGGGGSAYGAGGEHASGYGNGAGEGGGAGASGYGGGAYGGGGGHGGGGGGGSAGGAHGGS 201

Query: 204 GRGDGVGSHAGGSGI-GAGGGYGGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGGYD 252
           G G G G  AGG G  G  GGYGG  GG G G GGAYG GGAHGG +    G GE GGY 
Sbjct: 202 GYGGGEGGGAGGGGSHGGAGGYGG-GGGGGSGGGGAYGGGGAHGGGY--GSGGGEGGGYG 248

[Close]

BLAST of CmoCh16G012130 vs. TAIR 10
Match: AT5G46730.2 (glycine-rich protein )

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-08
Identity = 107/240 (44.58%), Postives = 125/240 (52.08%), Query Frame = 0


Query: 24  SAARTLLDYDPRTRHYGYDRPNPREGYDSGHRDESYDNAYGGRSGGGYGDRSSALGGSGY 83
           + +R LL+Y   +   G+       G  SG         YGG SGGGYG      GGSG 
Sbjct: 22  ATSRNLLNYGQASGGGGHGGGGGSGGVSSG--------GYGGESGGGYG------GGSGE 81

Query: 84  GSGGVRG--SGYGNGGGNAYGGGVSSGVGGAGYGSGSRYGGGEDHG---VGYAGGRSGGY 143
           G+GG  G   GY +GGG+ +GGG        GY SG+  GGG  +G    G+AGG  GG 
Sbjct: 82  GAGGGYGGAEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGGGYGGAAGGHAGGGGGGS 141

Query: 144 ENGGNGGYGQGRDHDIGYGSRNGNGNGNGNGNGYGDSHGYGNGGGVDGGYGRGDGVGSHA 203
             GG   YG G +H  GYG+  G G G G  +GYG    YG GGG  GG G G   G+H 
Sbjct: 142 GGGGGSAYGAGGEHASGYGNGAGEGGGAG-ASGYGGG-AYGGGGGHGGGGGGGSAGGAHG 201

Query: 204 G---GSGIGAGGGY-GGHAGGSGIGAGGAYGSGGAHGGEHDNSKGSGEEGG---YDGGYA 252
           G   GSG G GGGY GG AGG G G GG  G GG++GGEH    G G  GG     GGYA
Sbjct: 202 GSGYGSGGGEGGGYGGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGGGHGGGGYA 245

The following BLAST results are available for this feature:

BLAST of CmoCh16G012130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10496	3.9e-09	40.94	Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2...	[more]
P10495	1.7e-07	46.27	Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2...	[more]

BLAST of CmoCh16G012130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6B7	3.3e-107	97.15	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1E5N6	7.3e-107	97.15	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1E6F7	2.3e-105	90.26	glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita mosch...	[more]
A0A6J1E9N8	4.0e-105	89.59	glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1L118	7.5e-104	95.12	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of CmoCh16G012130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46730.1	2.4e-09	43.85	glycine-rich protein	[more]
AT5G46730.2	2.6e-08	44.58	glycine-rich protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 179..194 score: 46.09 coord: 237..255 score: 32.24 coord: 97..108 score: 42.71 coord: 209..219 score: 40.91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..169

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012130.1	CmoCh16G012130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding