CmoCh16G012110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	glycine-rich cell wall structural protein 1.8-like
Location	Cmo_Chr16: 8650421 .. 8651221 (-)
RNA-Seq Expression	CmoCh16G012110
Synteny	CmoCh16G012110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCATGCAATGCAATACCTTGTTTTCTTTGCTTTGTTGGGTTTTGGGTTAGCTTCTGCAGCCAGAACCCTTGTTGCCTATGATGCCAATGTCCAAGTCCCAGTGTTAGGCCGCGTTTCTGTTGGATATGGTGGTGGAGAGGGTGGTGGTAGCGGGTATGGAGTTACCACTGGATATGCCGGTGGTGGTGGTGGGGGAGGACGCGGAGGTGGAGGTGGCTCTGGATATGGAGGTGTTGGATATGGAAATGGTGGAGGTGAAGGAAGTGGCGCTGGATATGGAGGTGGAGAAGATCGTGGTTATGGCAATGGTGGTGGTGGTGGTGGAGGAAGTGGAGGTGGTAGCGGTGGTGGTTATGGCCCCGGTGGTGGATATGGAAGTGGAGGGGGAGCTGGGTCAGGTGGTGGTTATGGTAGTGGGGGAGTAGGTTATGGAGGAGGAGGAGGTGGGGGAAGTGGAGGCGGTGGTGGTTATGGTGCCGGAGGAGCAAATGGCGGTGGATATGGAAGTGGCGGAGGACAAGGAGGCGGCTCAGGGAGCGGTGCAGGAGGGCATGGAGGTGGCGGAGGAGGCGGTTCCGGTGGTGGGTATGGTGGTGGAGGAGCAAATGGAGGTGGATACGGAAGTGGCGGAGGAGGAGGCGGCGGCTCAGGAAGTGGAGCAGGAGGGCATGGAGGTGGAGGCGGTGGTGGCTCCGGTGGCGGCTATGGTGGTGGAGGTGCACAAGGAGGTGGATATGGAGCTGGCGGAGGTAGCGGACAAGGCGGAGGACATGGTGGTGGGTATGCACCATGA

mRNA sequence

ATGGAGAATCATGCAATGCAATACCTTGTTTTCTTTGCTTTGTTGGGTTTTGGGTTAGCTTCTGCAGCCAGAACCCTTGTTGCCTATGATGCCAATGTCCAAGTCCCAGTGTTAGGCCGCGTTTCTGTTGGATATGGTGGTGGAGAGGGTGGTGGTAGCGGGTATGGAGTTACCACTGGATATGCCGGTGGTGGTGGTGGGGGAGGACGCGGAGGTGGAGGTGGCTCTGGATATGGAGGTGTTGGATATGGAAATGGTGGAGGTGAAGGAAGTGGCGCTGGATATGGAGGTGGAGAAGATCGTGGTTATGGCAATGGTGGTGGTGGTGGTGGAGGAAGTGGAGGTGGTAGCGGTGGTGGTTATGGCCCCGGTGGTGGATATGGAAGTGGAGGGGGAGCTGGGTCAGGTGGTGGTTATGGTAGTGGGGGAGTAGGTTATGGAGGAGGAGGAGGTGGGGGAAGTGGAGGCGGTGGTGGTTATGGTGCCGGAGGAGCAAATGGCGGTGGATATGGAAGTGGCGGAGGACAAGGAGGCGGCTCAGGGAGCGGTGCAGGAGGGCATGGAGGTGGCGGAGGAGGCGGTTCCGGTGGTGGGTATGGTGGTGGAGGAGCAAATGGAGGTGGATACGGAAGTGGCGGAGGAGGAGGCGGCGGCTCAGGAAGTGGAGCAGGAGGGCATGGAGGTGGAGGCGGTGGTGGCTCCGGTGGCGGCTATGGTGGTGGAGGTGCACAAGGAGGTGGATATGGAGCTGGCGGAGGTAGCGGACAAGGCGGAGGACATGGTGGTGGGTATGCACCATGA

Coding sequence (CDS)

ATGGAGAATCATGCAATGCAATACCTTGTTTTCTTTGCTTTGTTGGGTTTTGGGTTAGCTTCTGCAGCCAGAACCCTTGTTGCCTATGATGCCAATGTCCAAGTCCCAGTGTTAGGCCGCGTTTCTGTTGGATATGGTGGTGGAGAGGGTGGTGGTAGCGGGTATGGAGTTACCACTGGATATGCCGGTGGTGGTGGTGGGGGAGGACGCGGAGGTGGAGGTGGCTCTGGATATGGAGGTGTTGGATATGGAAATGGTGGAGGTGAAGGAAGTGGCGCTGGATATGGAGGTGGAGAAGATCGTGGTTATGGCAATGGTGGTGGTGGTGGTGGAGGAAGTGGAGGTGGTAGCGGTGGTGGTTATGGCCCCGGTGGTGGATATGGAAGTGGAGGGGGAGCTGGGTCAGGTGGTGGTTATGGTAGTGGGGGAGTAGGTTATGGAGGAGGAGGAGGTGGGGGAAGTGGAGGCGGTGGTGGTTATGGTGCCGGAGGAGCAAATGGCGGTGGATATGGAAGTGGCGGAGGACAAGGAGGCGGCTCAGGGAGCGGTGCAGGAGGGCATGGAGGTGGCGGAGGAGGCGGTTCCGGTGGTGGGTATGGTGGTGGAGGAGCAAATGGAGGTGGATACGGAAGTGGCGGAGGAGGAGGCGGCGGCTCAGGAAGTGGAGCAGGAGGGCATGGAGGTGGAGGCGGTGGTGGCTCCGGTGGCGGCTATGGTGGTGGAGGTGCACAAGGAGGTGGATATGGAGCTGGCGGAGGTAGCGGACAAGGCGGAGGACATGGTGGTGGGTATGCACCATGA

Protein sequence

MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTGYAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGGYGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP

Homology

[Close]

BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A6J1E5Z3 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431102 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 5.7e-75
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60
           MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG
Sbjct: 1   MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60

Query: 61  YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120
           YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG
Sbjct: 61  YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120

Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180
           YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS
Sbjct: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180

Query: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 240
           GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG
Sbjct: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 240

Query: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 267
           GGAQGGGYGAGGGSGQGGGHGGGYAP
Sbjct: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 266

[Close]

BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A6J1L823 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111500160 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.7e-66
Identity = 257/272 (94.49%), Postives = 260/272 (95.59%), Query Frame = 0


Query: 1   MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60
           MENHA++YLVFFALLGFGLASAARTLVAYDANVQVPVLGRVS+GYGGGEGGGSGYGVT G
Sbjct: 13  MENHAIEYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSIGYGGGEGGGSGYGVTAG 72

Query: 61  YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120
           YA GGGGGGRGGGGGS YGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG
Sbjct: 73  YA-GGGGGGRGGGGGSAYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 132

Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGAN------GGGYGSGG 180
           YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGAN      GGGYGSGG
Sbjct: 133 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGYGSGG 192

Query: 181 GQGGGSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGS 240
           GQGG SGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGG GGGSGSGAGGHGGG GGGS
Sbjct: 193 GQGGSSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGEGGGSGSGAGGHGGGVGGGS 252

Query: 241 GGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP 267
           GGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP
Sbjct: 253 GGGYGGGGAQGGGYGAGGGSGQGGGHGGGYAP 283

[Close]

BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A6J1E9J4 (glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111431102 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 3.0e-63
Identity = 233/266 (87.59%), Postives = 233/266 (87.59%), Query Frame = 0


Query: 1   MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60
           MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG
Sbjct: 1   MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60

Query: 61  YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120
           YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG
Sbjct: 61  YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120

Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180
           YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGS        
Sbjct: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGS-------- 180

Query: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 240
                                    GGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG
Sbjct: 181 -------------------------GGGYGSGGGGGGGSGSGAGGHGGGGGGGSGGGYGG 233

Query: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 267
           GGAQGGGYGAGGGSGQGGGHGGGYAP
Sbjct: 241 GGAQGGGYGAGGGSGQGGGHGGGYAP 233

[Close]

BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A0A0L3Y5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011080 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-40
Identity = 224/276 (81.16%), Postives = 231/276 (83.70%), Query Frame = 0


Query: 1   MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60
           MENH +Q+L  FALLG GLASAARTL+AYD +V  PVLG  SVGYGGGEG GSGYGV+ G
Sbjct: 1   MENHRVQFLALFALLGLGLASAARTLIAYDGDVHAPVLGHTSVGYGGGEGAGSGYGVSVG 60

Query: 61  YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120
           Y GGGGGGGRGGGGGS  GGVGYGNGGGEGSGAGYGGGE+RGYGNGGGGGGG  GG GGG
Sbjct: 61  Y-GGGGGGGRGGGGGSTNGGVGYGNGGGEGSGAGYGGGEERGYGNGGGGGGGGSGGGGGG 120

Query: 121 -----YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGG----SGGGGGYGAGGANGGGYG 180
                YGP GGYGSG G GSGGGYG GG GYGGGGGGG     GG GGYGAG A+GGGYG
Sbjct: 121 GSGVRYGPVGGYGSGEGGGSGGGYGGGGSGYGGGGGGGGGGNGGGSGGYGAGEASGGGYG 180

Query: 181 SGGGQGGGSGSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSGSGAGGHGGGGG 240
           SGGGQGGGSGSG GGHGGGGGGG GGGYG GG NGGGYGSGGG GGGSGSGAGGHGGGGG
Sbjct: 181 SGGGQGGGSGSGGGGHGGGGGGGWGGGYGSGG-NGGGYGSGGGEGGGSGSGAGGHGGGGG 240

Query: 241 GGSGGGY-GGGGAQGGGYGAGGGSGQGGGHGGGYAP 267
           GGSGGGY GGGGAQGGGYG GGGS   GG GGGYAP
Sbjct: 241 GGSGGGYGGGGGAQGGGYGGGGGS---GGGGGGYAP 271

[Close]

BLAST of CmoCh16G012110 vs. ExPASy TrEMBL
Match: A0A1S4DY03 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103490777 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 6.0e-24
Identity = 168/220 (76.36%), Postives = 179/220 (81.36%), Query Frame = 0


Query: 1   MENHAMQYLVFFALLGFGLASAARTLVAYDANVQVPVLGRVSVGYGGGEGGGSGYGVTTG 60
           MENH +Q+L  FALLG GLASAARTL+AYD +V+VPVLG  SVGYGGGEGGGSGYG++ G
Sbjct: 1   MENHRVQFLALFALLGLGLASAARTLIAYDGDVRVPVLGHTSVGYGGGEGGGSGYGLSLG 60

Query: 61  YAGGGGGGGRGGGGGSGYGGVGYGNGGGEGSGAGYGGGEDRGYGNGGGGGGGSGGGSGGG 120
           Y GGGGGGG GGGGGS  GG GYGNGGGEGSG+GYGG        GGGGG G GGG G G
Sbjct: 61  Y-GGGGGGGHGGGGGSTNGG-GYGNGGGEGSGSGYGG--------GGGGGNGGGGGYGAG 120

Query: 121 YGPGGGYGSGGGAGSGGGYGSGGVGYGGGGGGGSGGGGGYGAGGANGGGYGSGGGQGGGS 180
              GGGYGSGG  G GGG GSGG G+GGGGGG  G GGGYG+GG NGGGYGSGGG+GGGS
Sbjct: 121 AASGGGYGSGG--GQGGGSGSGGGGHGGGGGG--GWGGGYGSGG-NGGGYGSGGGEGGGS 180

Query: 181 GSGAGGHGGGGGGGSGGGYGGGGANGGGYGSGGGGGGGSG 221
           GSGAGGHGGGGGGGSGGGYGGGGA GGGYG GGG GGG G
Sbjct: 181 GSGAGGHGGGGGGGSGGGYGGGGAQGGGYGGGGGSGGGGG 205

The following BLAST results are available for this feature:

BLAST of CmoCh16G012110 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G012110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E5Z3	5.7e-75	100.00	glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1L823	1.7e-66	94.49	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1E9J4	3.0e-63	87.59	glycine-rich cell wall structural protein 1.8-like isoform X2 OS=Cucurbita mosch...	[more]
A0A0A0L3Y5	1.6e-40	81.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011080 PE=4 SV=1	[more]
A0A1S4DY03	6.0e-24	76.36	glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CmoCh16G012110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 4..20 score: 29.41 coord: 107..122 score: 63.28 coord: 157..175 score: 40.13 coord: 132..142 score: 29.55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012110.1	CmoCh16G012110.1	mRNA