CmoCh16G012070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr16: 8629457 .. 8629786 (-)
RNA-Seq Expression	CmoCh16G012070
Synteny	CmoCh16G012070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTGAACTGCCTCTCCTGTCAACTCTTACAGAGAACGGACTCCGAGAGAGACCCCGACCCGCAGCACCAAAACTACTACTCCGTTCAGATAGAGCCGTCGGGGAGAAGCTGGTCCGGCAACCTCTCTTTCCGCCCTCCCGATCGCCCAAAGAAAGAACCGCTTCGAGCCCTGCCTGAGGACCAGGCGCCTCCCGTCGCCCCCCGCCGTCTTCACAGCTCCGGCCCCATCTCTTTGGGCAGCAAGGAGCCGAAGCTGGTTCGAAGCTCCGGGATGAGGAGGGATTGGAGCTTCGAGGATCTCAGAGCCATTCGAGAGGAAAAATAA

mRNA sequence

ATGACTCTGAACTGCCTCTCCTGTCAACTCTTACAGAGAACGGACTCCGAGAGAGACCCCGACCCGCAGCACCAAAACTACTACTCCGTTCAGATAGAGCCGTCGGGGAGAAGCTGGTCCGGCAACCTCTCTTTCCGCCCTCCCGATCGCCCAAAGAAAGAACCGCTTCGAGCCCTGCCTGAGGACCAGGCGCCTCCCGTCGCCCCCCGCCGTCTTCACAGCTCCGGCCCCATCTCTTTGGGCAGCAAGGAGCCGAAGCTGGTTCGAAGCTCCGGGATGAGGAGGGATTGGAGCTTCGAGGATCTCAGAGCCATTCGAGAGGAAAAATAA

Coding sequence (CDS)

ATGACTCTGAACTGCCTCTCCTGTCAACTCTTACAGAGAACGGACTCCGAGAGAGACCCCGACCCGCAGCACCAAAACTACTACTCCGTTCAGATAGAGCCGTCGGGGAGAAGCTGGTCCGGCAACCTCTCTTTCCGCCCTCCCGATCGCCCAAAGAAAGAACCGCTTCGAGCCCTGCCTGAGGACCAGGCGCCTCCCGTCGCCCCCCGCCGTCTTCACAGCTCCGGCCCCATCTCTTTGGGCAGCAAGGAGCCGAAGCTGGTTCGAAGCTCCGGGATGAGGAGGGATTGGAGCTTCGAGGATCTCAGAGCCATTCGAGAGGAAAAATAA

Protein sequence

MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLRALPEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK

Homology

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BLAST of CmoCh16G012070 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.1e-52
Identity = 106/109 (97.25%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLRALP 60
           MTLNCLSCQLLQRTDSERDPDPQ QNYYS QIEPSGRSWSGNLSFRPPDRPKKE LRALP
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALRALP 60

Query: 61  EDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 110
           EDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK
Sbjct: 61  EDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 109

[Close]

BLAST of CmoCh16G012070 vs. ExPASy TrEMBL
Match: A0A6J1E9T1 (uncharacterized protein LOC111431168 OS=Cucurbita moschata OX=3662 GN=LOC111431168 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 1.0e-41
Identity = 92/109 (84.40%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLRALP 60
           MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWS                 ALP
Sbjct: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWS-----------------ALP 60

Query: 61  EDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 110
           EDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK
Sbjct: 61  EDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 92

[Close]

BLAST of CmoCh16G012070 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 1   MTLNCLSCQL-LQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLRAL 60
           M+LNCLSCQL LQR+DS++D + QH+ Y++ Q +   RSWSGNLSFRPP R   +  R  
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDLE-QHE-YFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVR 60

Query: 61  PEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLRAIREEK 110
            E++  P+  RRLHS+G ++ G   KEP+L+RS+GMRRDWSFEDLRAIRE+K
Sbjct: 61  TENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDK 110

[Close]

BLAST of CmoCh16G012070 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 66/110 (60.00%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYY-SVQIEPSGRSWSGNLSFRPPDRPKKEPLRAL 60
           M+LNCLSCQLLQRTDSER  D Q Q YY S + +PS RSWSGNLS R   + +    R +
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSLR---QNRGGVFRGM 60

Query: 61  PEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 110
            +++  PV  RR      +S G KEP+LVRSSGMRRDWSFEDLR IREEK
Sbjct: 61  ADNKVAPVCHRR-----AVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEK 102

[Close]

BLAST of CmoCh16G012070 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.9e-23
Identity = 66/110 (60.00%), Postives = 77/110 (70.00%), Query Frame = 0


Query: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYY-SVQIEPSGRSWSGNLSFRPPDRPKKEPLRAL 60
           M+LNCLSCQLLQRTDSER  D Q Q YY S + +PS RSWSGNLS R   + +    R +
Sbjct: 1   MSLNCLSCQLLQRTDSERHRDRQIQTYYTSDEFDPSQRSWSGNLSLR---QNRGGVFRGM 60

Query: 61  PEDQAPPVAPRRLHSSGPISLGSKEPKLVRSSGMRRDWSFEDLRAIREEK 110
            +++  PV  RR      +S G KEP+LVRSSGMRRDWSFEDLR IREEK
Sbjct: 61  ADNKVAPVCHRR-----AVSFGGKEPRLVRSSGMRRDWSFEDLRTIREEK 102

[Close]

BLAST of CmoCh16G012070 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 9.0e-11
Identity = 49/129 (37.98%), Postives = 66/129 (51.16%), Query Frame = 0


Query: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEP-----------SGRSWSGNLSFRPPD 60
           M+LNCLSCQ L RTDS +D D        V+I              GR+WSGNLS R  +
Sbjct: 1   MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYE 60

Query: 61  RPKKEPLRALPEDQAPPVAPRRLHSSGPISLG-------SKEPKLVRSSGMRRDWSFEDL 110
           +  + P  +L            +  SGP+           ++PKLVRS+G+RR+WSFE+L
Sbjct: 61  KIGR-PGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENL 120

[Close]

BLAST of CmoCh16G012070 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.6e-10
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 1   MTLNCLSCQLLQRTDSERDPDPQHQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLRALP 60
           M+LNCL+C +LQRTDS+RD   +  + +      S        +F    R +     +LP
Sbjct: 1   MSLNCLACHILQRTDSDRDMGSRKDSSFKENFATS--------AFEKMVRNRS----SLP 60

Query: 61  EDQAPPVAPRRLHSSGPISLGS-KEPKLVRSSGMRRDWSFEDLRAIREE 109
             +      RRL+S+  +  G   EPKLVRSSG+RRDWSFEDL+  +++
Sbjct: 61  VVRRVNKGHRRLYSADIMVYGELDEPKLVRSSGIRRDWSFEDLKKHKDQ 97

The following BLAST results are available for this feature:

BLAST of CmoCh16G012070 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G012070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L834	2.1e-52	97.25	uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186...	[more]
A0A6J1E9T1	1.0e-41	84.40	uncharacterized protein LOC111431168 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1GL99	1.1e-24	58.04	uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A5A7UAS3	7.9e-23	60.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJN6	7.9e-23	60.00	uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=...	[more]

BLAST of CmoCh16G012070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46770.1	9.0e-11	37.98	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT2G35215.1	2.6e-10	38.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..93
None	No IPR available	PANTHER	PTHR36019:SF3	PLANT/PROTEIN	coord: 1..108
None	No IPR available	PANTHER	PTHR36019	PLANT/PROTEIN	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012070.1	CmoCh16G012070.1	mRNA