CmoCh16G012060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G012060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	VQ domain-containing protein
Location	Cmo_Chr16: 8625465 .. 8626436 (-)
RNA-Seq Expression	CmoCh16G012060
Synteny	CmoCh16G012060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGGAATAGGCAGAATGAGAATTTAGGCGTGAACAAATTGGGGAAGAACATTAGGAAGAGCCCAATTCACCAGCCAAATTTTGGAAATAATGCTGCTAGGCCTCAACCCCAGCCACAAATTTACAATATAAGCAAGAATGATTTTAGGAACATTGTTCAGCAGCTTACAGGCTCACCATCTCAGGATCCTCAGCCTCCTAGAGGTCCACAAAATCCACCAAAACCCCAAAGCTTGAGGTTGCAGAGAATACGACCTCCTCCGTTAACGCCGATTAATCGACCGAACATGCCTGCGCCTATCCCTGCCCCTGTTCCTGTGCCTCCACCCCAGGCTCTACTCACTAATAATGTGCCTAGGCCTGCACAATTTGCTCAGCCACCTCCTAGACAATTGCCACCATTGGCACCGGGAGGAGACTCGAATTGGCCGAACCCTGCTGCTGAGTCCCCCATTTCGGCATACATGCGTTACCTTCAAAATTCAATGATGAATCCATCTCCAATGGCGAACCAGTTACCACAACCGCAGATTCCTGGTCAAATGCATCCTCCTCAAGCACCACCATCTGGTTTATTGCCTAATCCTAATCCTAATCCTAATCCTAATCCTAATCCACCTGTTCCTGCTCTTCCACCCTCGAGATTAAACGGTCCTCCACCGCCCGTGCCAAACTTTCCTTCACCGAACTGGAACGCTCCCGCCCTTTTACCGTCCCCAACTTCCCAGTTTCTATTGCCTTCTCCTACTGGCTACTACAATTTGTTGTCCCCAAAATCACCATATCCATTACTCTCTCCAGGAATACAGTTTTCTCCGCCGCTGACTCCTAATTTTGCATTTCCATCCACGCCTCAATCAGGGATCTTAGGTCCAGGGCCTCATCCACCACCTTCCCCAGGGGTTATGTTCCCATTGTCTCCTTCCGGGTTTTTTCCCATCTTGAGTCCAAGATGGAGAGATCAATAA

mRNA sequence

ATGGATAGGAATAGGCAGAATGAGAATTTAGGCGTGAACAAATTGGGGAAGAACATTAGGAAGAGCCCAATTCACCAGCCAAATTTTGGAAATAATGCTGCTAGGCCTCAACCCCAGCCACAAATTTACAATATAAGCAAGAATGATTTTAGGAACATTGTTCAGCAGCTTACAGGCTCACCATCTCAGGATCCTCAGCCTCCTAGAGGTCCACAAAATCCACCAAAACCCCAAAGCTTGAGGTTGCAGAGAATACGACCTCCTCCGTTAACGCCGATTAATCGACCGAACATGCCTGCGCCTATCCCTGCCCCTGTTCCTGTGCCTCCACCCCAGGCTCTACTCACTAATAATGTGCCTAGGCCTGCACAATTTGCTCAGCCACCTCCTAGACAATTGCCACCATTGGCACCGGGAGGAGACTCGAATTGGCCGAACCCTGCTGCTGAGTCCCCCATTTCGGCATACATGCGTTACCTTCAAAATTCAATGATGAATCCATCTCCAATGGCGAACCAGTTACCACAACCGCAGATTCCTGGTCAAATGCATCCTCCTCAAGCACCACCATCTGGTTTATTGCCTAATCCTAATCCTAATCCTAATCCTAATCCTAATCCACCTGTTCCTGCTCTTCCACCCTCGAGATTAAACGGTCCTCCACCGCCCGTGCCAAACTTTCCTTCACCGAACTGGAACGCTCCCGCCCTTTTACCGTCCCCAACTTCCCAGTTTCTATTGCCTTCTCCTACTGGCTACTACAATTTGTTGTCCCCAAAATCACCATATCCATTACTCTCTCCAGGAATACAGTTTTCTCCGCCGCTGACTCCTAATTTTGCATTTCCATCCACGCCTCAATCAGGGATCTTAGGTCCAGGGCCTCATCCACCACCTTCCCCAGGGGTTATGTTCCCATTGTCTCCTTCCGGGTTTTTTCCCATCTTGAGTCCAAGATGGAGAGATCAATAA

Coding sequence (CDS)

ATGGATAGGAATAGGCAGAATGAGAATTTAGGCGTGAACAAATTGGGGAAGAACATTAGGAAGAGCCCAATTCACCAGCCAAATTTTGGAAATAATGCTGCTAGGCCTCAACCCCAGCCACAAATTTACAATATAAGCAAGAATGATTTTAGGAACATTGTTCAGCAGCTTACAGGCTCACCATCTCAGGATCCTCAGCCTCCTAGAGGTCCACAAAATCCACCAAAACCCCAAAGCTTGAGGTTGCAGAGAATACGACCTCCTCCGTTAACGCCGATTAATCGACCGAACATGCCTGCGCCTATCCCTGCCCCTGTTCCTGTGCCTCCACCCCAGGCTCTACTCACTAATAATGTGCCTAGGCCTGCACAATTTGCTCAGCCACCTCCTAGACAATTGCCACCATTGGCACCGGGAGGAGACTCGAATTGGCCGAACCCTGCTGCTGAGTCCCCCATTTCGGCATACATGCGTTACCTTCAAAATTCAATGATGAATCCATCTCCAATGGCGAACCAGTTACCACAACCGCAGATTCCTGGTCAAATGCATCCTCCTCAAGCACCACCATCTGGTTTATTGCCTAATCCTAATCCTAATCCTAATCCTAATCCTAATCCACCTGTTCCTGCTCTTCCACCCTCGAGATTAAACGGTCCTCCACCGCCCGTGCCAAACTTTCCTTCACCGAACTGGAACGCTCCCGCCCTTTTACCGTCCCCAACTTCCCAGTTTCTATTGCCTTCTCCTACTGGCTACTACAATTTGTTGTCCCCAAAATCACCATATCCATTACTCTCTCCAGGAATACAGTTTTCTCCGCCGCTGACTCCTAATTTTGCATTTCCATCCACGCCTCAATCAGGGATCTTAGGTCCAGGGCCTCATCCACCACCTTCCCCAGGGGTTATGTTCCCATTGTCTCCTTCCGGGTTTTTTCCCATCTTGAGTCCAAGATGGAGAGATCAATAA

Protein sequence

MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGSPSQDPQPPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVPRPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIPGQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPHPPPSPGVMFPLSPSGFFPILSPRWRDQ

Homology

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BLAST of CmoCh16G012060 vs. ExPASy Swiss-Prot
Match: O82170 (Protein HAIKU1 OS=Arabidopsis thaliana OX=3702 GN=IKU1 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 3.1e-64
Identity = 187/415 (45.06%), Postives = 219/415 (52.77%), Query Frame = 0


Query: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFG---NNAARP--QPQPQIYNISKNDFRNIVQ 60
           MDR RQN++LGVN++GKNIRKSP+HQ  F    +N A P  Q QPQ+YNISKNDFR+IVQ
Sbjct: 1   MDRPRQNDHLGVNRIGKNIRKSPLHQSTFAASTSNGAAPRLQTQPQVYNISKNDFRSIVQ 60

Query: 61  QLTGSPSQDPQPPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALL 120
           QLTGSPS++  P     N  +PQ+ RLQRIRP PLT +NRP +P P  AP    P     
Sbjct: 61  QLTGSPSRESLPRPPQNNSLRPQNTRLQRIRPSPLTQLNRPAVPLPSMAPPQSHP----- 120

Query: 121 TNNVPRPAQFAQPPPRQLP-------PLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPS 180
                   QFA+ PP Q P       P+    D  W N  AESP+S YMRYLQ+S+ +  
Sbjct: 121 --------QFARQPPHQPPFPQTTQQPMMGHRDQFWSN-TAESPVSEYMRYLQSSLGDSG 180

Query: 181 PMANQL-----------------------PQPQIPG------------------------ 240
           P ANQ+                        QP +PG                        
Sbjct: 181 PNANQMQPGHEQRPYIPGHEQRPYVPGNEQQPYMPGNEQRPYIPGHEQRSYMPAQSQSQS 240

Query: 241 QMHPPQAPPSGLLPNPNPNPN------PNPNPPVPALPPS---------RLNGPPPPVP- 300
           Q  P   P   ++P P P  N      PN   P P L PS         R N P P  P 
Sbjct: 241 QPQPQPQPQQHMMPGPQPRMNMQGPLQPNQYLPPPGLVPSPVPHNLPSPRFNAPVPVTPT 300

Query: 301 -----------NFPSPNWNAPALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSP 323
                       FPSP +N    L SPTSQFL PSPTGY N+ SP+SPYPLLSPG+Q+  
Sbjct: 301 QPSPMFSQMYGGFPSPRYNGFGPLQSPTSQFLQPSPTGYPNMFSPRSPYPLLSPGVQYPQ 360

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BLAST of CmoCh16G012060 vs. ExPASy Swiss-Prot
Match: Q9M9F0 (VQ motif-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=VQ9 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.8e-11
Identity = 102/270 (37.78%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 37  QPQPQIYNISKNDFRNIVQQLTGSPSQD--PQPPRGPQNPPKP-QSLRLQRIRPPPLTPI 96
           Q QP +YNI+KNDFR++VQ+LTGSP+ +    PP+ P + PKP QS RL RIRPPPL  +
Sbjct: 77  QHQPPVYNINKNDFRDVVQKLTGSPAHERISAPPQQPIHHPKPQQSSRLHRIRPPPL--V 136

Query: 97  NRPNMPAPIPAPVPVPPPQALLTNNVPRPAQFAQP--PPRQLPPLAPGGDSNWPNPAAES 156
           +  N P  +     +P     +  N        +P  P   LPPL P       + AAES
Sbjct: 137 HVINRPPGLLNDALIPQGSHHMNQNWTGVGFNLRPTAPLSPLPPLPP------VHAAAES 196

Query: 157 PISAYMRYLQNSMMNPSPMANQLPQPQIPGQMHPPQAPPSGLLPNPNPNPNPNPNPPVPA 216
           P+S+YMRYLQNSM        +                 SGL P   P  +P        
Sbjct: 197 PVSSYMRYLQNSMFAIDSNRKEF----------------SGLSPLA-PLVSPRWYQQQEN 256

Query: 217 LPPSRLNGPPPPVPNFPSPNWNAPALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQ 276
            PPS+ N  PPP P  PS    +      PTS   +P+P  +    SPKSPY LLSP I 
Sbjct: 257 APPSQHNSFPPPHPPPPS----SAVSQTVPTS---IPAPPLFGCSSSPKSPYGLLSPSIL 306

Query: 277 FSPPLTPNFAFPSTPQSGILGPGPHPPPSP 302
            SP  +    FP +P +        P PSP
Sbjct: 317 LSPS-SGQLGFPVSPTT-------VPLPSP 306

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BLAST of CmoCh16G012060 vs. ExPASy TrEMBL
Match: A0A6J1E6U6 (protein HAIKU1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431143 PE=4 SV=1)

HSP 1 Score: 637.1 bits (1642), Expect = 4.0e-179
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60
           MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS
Sbjct: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60

Query: 61  PSQDPQPPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVP 120
           PSQDPQPPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVP
Sbjct: 61  PSQDPQPPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVP 120

Query: 121 RPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIP 180
           RPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIP
Sbjct: 121 RPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIP 180

Query: 181 GQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPS 240
           GQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPS
Sbjct: 181 GQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPS 240

Query: 241 PTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPHPPPS 300
           PTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPHPPPS
Sbjct: 241 PTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPHPPPS 300

Query: 301 PGVMFPLSPSGFFPILSPRWRDQ 324
           PGVMFPLSPSGFFPILSPRWRDQ
Sbjct: 301 PGVMFPLSPSGFFPILSPRWRDQ 323

[Close]

BLAST of CmoCh16G012060 vs. ExPASy TrEMBL
Match: A0A6J1HKT6 (protein HAIKU1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465073 PE=4 SV=1)

HSP 1 Score: 600.1 bits (1546), Expect = 5.4e-168
Identity = 309/323 (95.67%), Postives = 310/323 (95.98%), Query Frame = 0


Query: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60
           MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS
Sbjct: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60

Query: 61  PSQDPQPPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVP 120
           PSQDP PPR PQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVP
Sbjct: 61  PSQDPHPPRAPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVP 120

Query: 121 RPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIP 180
           RPAQFAQPPPRQLPPLAPGGDS WPNPAAESPISAYMRYLQNSMMNPSPMANQLPQ QIP
Sbjct: 121 RPAQFAQPPPRQLPPLAPGGDSLWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQTQIP 180

Query: 181 GQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPS 240
           GQMHPPQAPPSGLL        P PNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPS
Sbjct: 181 GQMHPPQAPPSGLL--------PYPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPS 240

Query: 241 PTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPHPPPS 300
           PTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNF+FPSTPQSGILGPGPHPPPS
Sbjct: 241 PTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFSFPSTPQSGILGPGPHPPPS 300

Query: 301 PGVMFPLSPSGFFPILSPRWRDQ 324
           PGVMFPLSPSGFFPILSPRWRDQ
Sbjct: 301 PGVMFPLSPSGFFPILSPRWRDQ 315

[Close]

BLAST of CmoCh16G012060 vs. ExPASy TrEMBL
Match: A0A5D3CMQ7 (Protein HAIKU1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001630 PE=4 SV=1)

HSP 1 Score: 565.1 bits (1455), Expect = 1.9e-157
Identity = 292/327 (89.30%), Postives = 306/327 (93.58%), Query Frame = 0


Query: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60
           MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS
Sbjct: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60

Query: 61  PSQDPQ-PPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNV 120
           PSQD Q PPR PQNPPK QS+RLQRIRPPPLTPINRPN+PAPIPAPVPVPPPQA++ NNV
Sbjct: 61  PSQDNQPPPRPPQNPPKSQSMRLQRIRPPPLTPINRPNIPAPIPAPVPVPPPQAVVNNNV 120

Query: 121 PRPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQ---LPQ 180
           PRP QFAQPPPRQLPP+A GGDS+WPNPAAESPISAYMRYLQNSMMNPSP+ NQ   +PQ
Sbjct: 121 PRPPQFAQPPPRQLPPMALGGDSHWPNPAAESPISAYMRYLQNSMMNPSPVGNQAQFVPQ 180

Query: 181 PQIPGQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPA 240
           PQIPGQ+HPP APPSGLL    PNPNPNPNPPVPALP  RLNGPPPP+PNFPSP+WN PA
Sbjct: 181 PQIPGQIHPPHAPPSGLL----PNPNPNPNPPVPALPSPRLNGPPPPIPNFPSPHWNGPA 240

Query: 241 LLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPH 300
           LLPSPTSQFLLPSPTGYYN+LSPKSPYPLLSPGIQF+PPLTPNFAFPS PQSGILGPGPH
Sbjct: 241 LLPSPTSQFLLPSPTGYYNMLSPKSPYPLLSPGIQFTPPLTPNFAFPSMPQSGILGPGPH 300

Query: 301 PPPSPGVMFPLSPSGFFPILSPRWRDQ 324
           PPPSPGV+FPLSPSG FPILSPRWRDQ
Sbjct: 301 PPPSPGVLFPLSPSGIFPILSPRWRDQ 323

[Close]

BLAST of CmoCh16G012060 vs. ExPASy TrEMBL
Match: A0A1S3BKA6 (protein HAIKU1-like OS=Cucumis melo OX=3656 GN=LOC103490784 PE=4 SV=1)

HSP 1 Score: 565.1 bits (1455), Expect = 1.9e-157
Identity = 292/327 (89.30%), Postives = 306/327 (93.58%), Query Frame = 0


Query: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60
           MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS
Sbjct: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGS 60

Query: 61  PSQDPQ-PPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNV 120
           PSQD Q PPR PQNPPK QS+RLQRIRPPPLTPINRPN+PAPIPAPVPVPPPQA++ NNV
Sbjct: 61  PSQDNQPPPRPPQNPPKSQSMRLQRIRPPPLTPINRPNIPAPIPAPVPVPPPQAVVNNNV 120

Query: 121 PRPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQ---LPQ 180
           PRP QFAQPPPRQLPP+A GGDS+WPNPAAESPISAYMRYLQNSMMNPSP+ NQ   +PQ
Sbjct: 121 PRPPQFAQPPPRQLPPMALGGDSHWPNPAAESPISAYMRYLQNSMMNPSPVGNQAQFVPQ 180

Query: 181 PQIPGQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPA 240
           PQIPGQ+HPP APPSGLL    PNPNPNPNPPVPALP  RLNGPPPP+PNFPSP+WN PA
Sbjct: 181 PQIPGQIHPPHAPPSGLL----PNPNPNPNPPVPALPSPRLNGPPPPIPNFPSPHWNGPA 240

Query: 241 LLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPH 300
           LLPSPTSQFLLPSPTGYYN+LSPKSPYPLLSPGIQF+PPLTPNFAFPS PQSGILGPGPH
Sbjct: 241 LLPSPTSQFLLPSPTGYYNMLSPKSPYPLLSPGIQFTPPLTPNFAFPSMPQSGILGPGPH 300

Query: 301 PPPSPGVMFPLSPSGFFPILSPRWRDQ 324
           PPPSPGV+FPLSPSG FPILSPRWRDQ
Sbjct: 301 PPPSPGVLFPLSPSGIFPILSPRWRDQ 323

[Close]

BLAST of CmoCh16G012060 vs. ExPASy TrEMBL
Match: A0A0A0L576 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011640 PE=4 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 3.4e-154
Identity = 290/328 (88.41%), Postives = 302/328 (92.07%), Query Frame = 0


Query: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFG-NNAARPQPQPQIYNISKNDFRNIVQQLTG 60
           MDRNRQNENLGVNKLGKNIRKSPIHQPNFG NNAARPQPQPQIYNISKNDFRNIVQQLTG
Sbjct: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFGNNNAARPQPQPQIYNISKNDFRNIVQQLTG 60

Query: 61  SPSQDPQ-PPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNN 120
           SPSQD Q PPR PQNPPK QS+RLQRIRPPPLTPINRPN+PAPIPAPVPVPPPQAL+ NN
Sbjct: 61  SPSQDNQPPPRPPQNPPKSQSMRLQRIRPPPLTPINRPNIPAPIPAPVPVPPPQALVNNN 120

Query: 121 VPRPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQ---LP 180
           VPRP QFAQPPPRQLPP+A GGDS+WPNPAAESPISAYMRYLQNSMMNPSP+ NQ   +P
Sbjct: 121 VPRPPQFAQPPPRQLPPVAMGGDSHWPNPAAESPISAYMRYLQNSMMNPSPVGNQAQFIP 180

Query: 181 QPQIPGQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAP 240
           Q Q+PGQMHPP APP GLL      PNPNPNPPVPALP  RLNGPPPP+PNFPSP+WN P
Sbjct: 181 QSQVPGQMHPPHAPPPGLL------PNPNPNPPVPALPSPRLNGPPPPIPNFPSPHWNGP 240

Query: 241 ALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGP 300
           ALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQF+PPLTPNFAFPS PQSGILGPGP
Sbjct: 241 ALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFTPPLTPNFAFPSMPQSGILGPGP 300

Query: 301 HPPPSPGVMFPLSPSGFFPILSPRWRDQ 324
           HPPPSPGV+FPLSPSG FPILSPRWRDQ
Sbjct: 301 HPPPSPGVLFPLSPSGIFPILSPRWRDQ 322

[Close]

BLAST of CmoCh16G012060 vs. TAIR 10
Match: AT2G35230.1 (VQ motif-containing protein )

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-65
Identity = 187/415 (45.06%), Postives = 219/415 (52.77%), Query Frame = 0


Query: 1   MDRNRQNENLGVNKLGKNIRKSPIHQPNFG---NNAARP--QPQPQIYNISKNDFRNIVQ 60
           MDR RQN++LGVN++GKNIRKSP+HQ  F    +N A P  Q QPQ+YNISKNDFR+IVQ
Sbjct: 1   MDRPRQNDHLGVNRIGKNIRKSPLHQSTFAASTSNGAAPRLQTQPQVYNISKNDFRSIVQ 60

Query: 61  QLTGSPSQDPQPPRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALL 120
           QLTGSPS++  P     N  +PQ+ RLQRIRP PLT +NRP +P P  AP    P     
Sbjct: 61  QLTGSPSRESLPRPPQNNSLRPQNTRLQRIRPSPLTQLNRPAVPLPSMAPPQSHP----- 120

Query: 121 TNNVPRPAQFAQPPPRQLP-------PLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPS 180
                   QFA+ PP Q P       P+    D  W N  AESP+S YMRYLQ+S+ +  
Sbjct: 121 --------QFARQPPHQPPFPQTTQQPMMGHRDQFWSN-TAESPVSEYMRYLQSSLGDSG 180

Query: 181 PMANQL-----------------------PQPQIPG------------------------ 240
           P ANQ+                        QP +PG                        
Sbjct: 181 PNANQMQPGHEQRPYIPGHEQRPYVPGNEQQPYMPGNEQRPYIPGHEQRSYMPAQSQSQS 240

Query: 241 QMHPPQAPPSGLLPNPNPNPN------PNPNPPVPALPPS---------RLNGPPPPVP- 300
           Q  P   P   ++P P P  N      PN   P P L PS         R N P P  P 
Sbjct: 241 QPQPQPQPQQHMMPGPQPRMNMQGPLQPNQYLPPPGLVPSPVPHNLPSPRFNAPVPVTPT 300

Query: 301 -----------NFPSPNWNAPALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSP 323
                       FPSP +N    L SPTSQFL PSPTGY N+ SP+SPYPLLSPG+Q+  
Sbjct: 301 QPSPMFSQMYGGFPSPRYNGFGPLQSPTSQFLQPSPTGYPNMFSPRSPYPLLSPGVQYPQ 360

[Close]

BLAST of CmoCh16G012060 vs. TAIR 10
Match: AT1G32610.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 152.1 bits (383), Expect = 7.4e-37
Identity = 136/321 (42.37%), Postives = 171/321 (53.27%), Query Frame = 0


Query: 8   ENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGSPSQDPQP 67
           + LGVNK+GKNI+KSP+             PQPQ Y++S NDF +IVQQLT SPS++  P
Sbjct: 9   DQLGVNKIGKNIKKSPL-------------PQPQGYSMSNNDFTSIVQQLTDSPSRESLP 68

Query: 68  PRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVPRPAQFAQ 127
              P+N  KPQ    Q+IRP     INRP +P P+ A               P     A+
Sbjct: 69  QPLPRNLLKPQ----QKIRPVGQIQINRPCVPPPVMAQ--------------PTHEFVAR 128

Query: 128 PPPRQLP----PLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIPGQM 187
           PP   LP    P+   GD    N  AES +S YMRY Q+S+ +  P  NQ+ QP    Q 
Sbjct: 129 PPMHPLPHGSQPIISHGDQFGSN-TAESSVSVYMRYRQSSLGDSGPNENQM-QPSHDNQQ 188

Query: 188 HPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPN--FPSPNWNAPALLPSP 247
            P     +    + +P  N +     P LP  + +GPP  + N   PSP +N   +LP+P
Sbjct: 189 QPQVEGQAQSHNHHSPRFNDSAR-NTPILPTPKFDGPPQQMHNNSLPSPRFNGRGILPTP 248

Query: 248 TSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTP-NFAFPSTPQSGILGPGPHPPPS 307
           TSQ+   SPT Y NLLSP+SP PLLS G+Q+ PPLTP N+ F S  Q GILGPG  P P 
Sbjct: 249 TSQYRPQSPTAYRNLLSPRSPSPLLSTGVQYPPPLTPRNYTFSSMDQPGILGPGTIPLPH 289

Query: 308 PGVMFPLSPSGFFPILSPRWR 322
                  SP G  PI S RWR
Sbjct: 309 ------ASPFGVIPISSQRWR 289

[Close]

BLAST of CmoCh16G012060 vs. TAIR 10
Match: AT1G32610.2 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 152.1 bits (383), Expect = 7.4e-37
Identity = 136/321 (42.37%), Postives = 171/321 (53.27%), Query Frame = 0


Query: 8   ENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGSPSQDPQP 67
           + LGVNK+GKNI+KSP+             PQPQ Y++S NDF +IVQQLT SPS++  P
Sbjct: 9   DQLGVNKIGKNIKKSPL-------------PQPQGYSMSNNDFTSIVQQLTDSPSRESLP 68

Query: 68  PRGPQNPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVPRPAQFAQ 127
              P+N  KPQ    Q+IRP     INRP +P P+ A               P     A+
Sbjct: 69  QPLPRNLLKPQ----QKIRPVGQIQINRPCVPPPVMAQ--------------PTHEFVAR 128

Query: 128 PPPRQLP----PLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIPGQM 187
           PP   LP    P+   GD    N  AES +S YMRY Q+S+ +  P  NQ+ QP    Q 
Sbjct: 129 PPMHPLPHGSQPIISHGDQFGSN-TAESSVSVYMRYRQSSLGDSGPNENQM-QPSHDNQQ 188

Query: 188 HPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPN--FPSPNWNAPALLPSP 247
            P     +    + +P  N +     P LP  + +GPP  + N   PSP +N   +LP+P
Sbjct: 189 QPQVEGQAQSHNHHSPRFNDSAR-NTPILPTPKFDGPPQQMHNNSLPSPRFNGRGILPTP 248

Query: 248 TSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTP-NFAFPSTPQSGILGPGPHPPPS 307
           TSQ+   SPT Y NLLSP+SP PLLS G+Q+ PPLTP N+ F S  Q GILGPG  P P 
Sbjct: 249 TSQYRPQSPTAYRNLLSPRSPSPLLSTGVQYPPPLTPRNYTFSSMDQPGILGPGTIPLPH 289

Query: 308 PGVMFPLSPSGFFPILSPRWR 322
                  SP G  PI S RWR
Sbjct: 309 ------ASPFGVIPISSQRWR 289

[Close]

BLAST of CmoCh16G012060 vs. TAIR 10
Match: AT2G35230.2 (VQ motif-containing protein )

HSP 1 Score: 147.1 bits (370), Expect = 2.4e-35
Identity = 118/287 (41.11%), Postives = 136/287 (47.39%), Query Frame = 0


Query: 124 QFAQPPPRQLP-------PLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQL-- 183
           QFA+ PP Q P       P+    D  W N  AESP+S YMRYLQ+S+ +  P ANQ+  
Sbjct: 9   QFARQPPHQPPFPQTTQQPMMGHRDQFWSN-TAESPVSEYMRYLQSSLGDSGPNANQMQP 68

Query: 184 ---------------------PQPQIPG------------------------QMHPPQAP 243
                                 QP +PG                        Q  P   P
Sbjct: 69  GHEQRPYIPGHEQRPYVPGNEQQPYMPGNEQRPYIPGHEQRSYMPAQSQSQSQPQPQPQP 128

Query: 244 PSGLLPNPNPNPN------PNPNPPVPALPPS---------RLNGPPPPVP--------- 303
              ++P P P  N      PN   P P L PS         R N P P  P         
Sbjct: 129 QQHMMPGPQPRMNMQGPLQPNQYLPPPGLVPSPVPHNLPSPRFNAPVPVTPTQPSPMFSQ 188

Query: 304 ---NFPSPNWNAPALLPSPTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAF 323
               FPSP +N    L SPTSQFL PSPTGY N+ SP+SPYPLLSPG+Q+  PLTPNF+F
Sbjct: 189 MYGGFPSPRYNGFGPLQSPTSQFLQPSPTGYPNMFSPRSPYPLLSPGVQYPQPLTPNFSF 248

[Close]

BLAST of CmoCh16G012060 vs. TAIR 10
Match: AT5G46780.1 (VQ motif-containing protein )

HSP 1 Score: 104.0 bits (258), Expect = 2.3e-22
Identity = 119/323 (36.84%), Postives = 147/323 (45.51%), Query Frame = 0


Query: 2   DRNRQNENLGVNKLGKNIRKSPIHQPNFGNNAARPQPQPQIYNISKNDFRNIVQQLTGSP 61
           + +  + +LGVNK+GKNIRK P +Q N   N     PQ  +YNI+K DFR+IVQQLTG  
Sbjct: 13  NNDHHHHHLGVNKMGKNIRKDPPNQQNQQQN-----PQALVYNINKTDFRSIVQQLTGLG 72

Query: 62  SQDPQPPRGPQ-NPPKPQSLRLQRIRPPPLTPINRPNMPAPIPAPVPVPPPQALLTNNVP 121
           S     P  PQ N PKP + RL ++RP PLT +N P      P P P PPP      +VP
Sbjct: 73  STSSVNP--PQTNHPKPPNSRLVKVRPAPLTQLNHP------PPPPPPPPP----VQSVP 132

Query: 122 RPAQFAQPPPRQLPPLAPGGDSNWPNPAAESPISAYMRYLQNSMMNPSPMANQLPQPQIP 181
             ++  QP             + + +  AESPISAYMRYL  S    SP+ N++ QPQ  
Sbjct: 133 IASEPVQPV------------NQFSSNPAESPISAYMRYLIES----SPVGNRV-QPQ-- 192

Query: 182 GQMHPPQAPPSGLLPNPNPNPNPNPNPPVPALPPSRLNGPPPPVPNFPSPNWNAPALLPS 241
                                N NP  P   L  S   GP              P    S
Sbjct: 193 ---------------------NQNPVQPSTGLFQSHQTGP-------------NPMSFQS 237

Query: 242 PTSQFLLPSPTGYYNLLSPKSPYPLLSPGIQFSPPLTPNFAFPSTPQSGILGPGPHPPPS 301
           P SQF L SP        P+SP+PL SP   FSP       F       +      PPPS
Sbjct: 253 PASQFAL-SP-------QPRSPFPLFSPNFAFSP------RFLGGSNESL------PPPS 237

Query: 302 PGVMFPLSPSGFFPILSPRWRDQ 324
           PG         FFP+LSP W++Q
Sbjct: 313 PGF--------FFPLLSPLWKNQ 237

The following BLAST results are available for this feature:

BLAST of CmoCh16G012060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82170	3.1e-64	45.06	Protein HAIKU1 OS=Arabidopsis thaliana OX=3702 GN=IKU1 PE=1 SV=1	[more]
Q9M9F0	1.8e-11	37.78	VQ motif-containing protein 9 OS=Arabidopsis thaliana OX=3702 GN=VQ9 PE=1 SV=1	[more]

BLAST of CmoCh16G012060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6U6	4.0e-179	100.00	protein HAIKU1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431143 PE=4 SV=...	[more]
A0A6J1HKT6	5.4e-168	95.67	protein HAIKU1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465073 PE=4 SV=1	[more]
A0A5D3CMQ7	1.9e-157	89.30	Protein HAIKU1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G...	[more]
A0A1S3BKA6	1.9e-157	89.30	protein HAIKU1-like OS=Cucumis melo OX=3656 GN=LOC103490784 PE=4 SV=1	[more]
A0A0A0L576	3.4e-154	88.41	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G011640 PE=4 SV=...	[more]

BLAST of CmoCh16G012060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35230.1	2.2e-65	45.06	VQ motif-containing protein	[more]
AT1G32610.1	7.4e-37	42.37	hydroxyproline-rich glycoprotein family protein	[more]
AT1G32610.2	7.4e-37	42.37	hydroxyproline-rich glycoprotein family protein	[more]
AT2G35230.2	2.4e-35	41.11	VQ motif-containing protein	[more]
AT5G46780.1	2.3e-22	36.84	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 38..63 e-value: 3.6E-10 score: 39.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 283..303
IPR039612	VQ motif-containing protein 5/9/14	PANTHER	PTHR33783	PROTEIN HAIKU1	coord: 1..323
IPR039825	VQ motif-containing protein 5/14	PANTHER	PTHR33783:SF1	PROTEIN HAIKU1	coord: 1..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G012060.1	CmoCh16G012060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009960	endosperm development
biological_process	GO:0080113	regulation of seed growth