CmoCh16G011120 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G011120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	mucin-2-like
Location	Cmo_Chr16: 7842694 .. 7846352 (-)
RNA-Seq Expression	CmoCh16G011120
Synteny	CmoCh16G011120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAATCGCCGCCGTGGACGACGGTAAAACGAGATGTGTACATTAGACGACAGCCACTTGTTGCCGGAATCATTTTGATCTCCTCATTCTCAGGTGTTTGTTTCTGTTCCTCGTCTTTTTTTTTTCTTTTTTTTTTGTCCAATTTAATCTTTGAATTTTATGTTCTGAATCTCGTGGGAAAAAAGCCATTGTGATTTCCTTCACCGCCATTCTTTCTCCATTATATATTGGCTTTGTATGTAACCATGTAGACTGTTTTCTGAGCATTGTGACTATAAACTATGGTTCCTGTGGCCGGTTGAGGGATGAACGAGTTTCGTCTCGGTTCGAGCTCGAGGGAAGTTTTTCGGGGTGTTTTAAGCCTATTTCTGCACCTATAAAATAGAGATGGTTAGATAAACACGACTCTCCAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGACTTTGCTTTAAACTTCGTCAAAATACCTCATACCAATGGAGAGGGTATTCTTTGACTATAAACCAATGACCATTTCCTAAATTAGTCAACATGAGACTTTCATCATCAGAGACAACATTAACGCAAATGGACTTAATATATATAGGTTTGAAATTGAAAAGAAATAAAAAGGTAGTGCACATTTATTTGTGAATATATACAGCCAAACACTTTACAGATAATAAGACACACAAACTAAGATATTCACACAGGCATACAATCATGTGTGTATTATTGGTTTTTAGGCTTTGGGTATTATACTTTCTTTATATGGAAGGAAAGTAATACAATACAAACACTTTGTTTTATTAGGCATTCCGTAATAATACCTCAAGCAATAATTGCATCACTTTGGTTGTTGCCTTCATTTGGTTGGGCAGTTTTATGGCCAAAACCGCCGCATCCGCCGCCACAGCCACCACCACAGCCACCACCACAGCCACCACTCTTTGCCACGATTCCACCAACAGAACTACCACTATTTACAATATTTCCGCACCCACCACCACAACCGCCAGCGCCGCATCCACCACATCCGCCACTGTTTACAATATTTCCGCACCCACCACCACAGCCGCCAGCACCGCATCCACCACAGCCACCACTGTTTATAATATTTCCGCACCCACCACCACAACCGCCAGCACCGCATCCGCCACATCCACCGCTCTTCACCATATTTCCACACCCACCACCACATCCACCAGCACCGCAACCCCCACAGCCACCGCTCTTCACCATGTTTCCACACCCACCACCACAACCGCCAGCACCGCATCCACCACATCCACCGCTCTTCACCATGTTTCCGGACCCTGCAGTGTAACCTCCAGCATCACATCGGCCACAATGACTACTAAGCTCATCCTCTTTCAAAGGTAATGTTACATTCTCTTTAGAAACACCTTCAGAAACATTGACTTTTAAATCAGTACTTGACAAGGATACATTGATTAAATTCATATTATTTTCTTCCTTGCCAGACGTATGAACACTCTCAGGAACAGGGGCAACCTCCAATTTTTCTTCACTTACAGTTAGGCCATTATACCCTTTTTTCTTCCGTGCATGAAGGAGAAGAAAAGCTGTCATGATTCCGGGCACCACCATCCACTCTTCCTTTATCTTTTAATTACAATATAGAGTCGGTCAGTATCATTCTCAAACATTCAGTTTGCAAAATAGGCAAAAGTGAATAGCAGTAATACCTTGATGACCCCAAATTTCAAGTCGAACAATGCCACTGCTCTTCCATACGGATATTCTGCAGAGAATTCGATAGCAGTCACGAAGTCCGAATCATGGTTATGTTTACCACAATTTTTGGGCTCATAATCCAGCTTACTGCCCTGGAAAAACTTCACCTATACAAGAAAATATTTGCCAGAAAATAGATAACATTTAAATTCATCAAGATGAAAAGTTACATGCTGAAAAGATTATTCCATTGACATGTTATTTTTAAACATGAAGGTCTCCTTAACATTCAAGGCCATAATTAGCTTATTTTCTAGCAGTTAAACATTCAAGGAAAATAGCAGCTTATTTTCTAGTTTTTCGATATGATAATAGACAAGCAGAGTGTTTTTTCTTTTAAGAGCTCCAGCATCATGAAATAATAAGAATCAAATTACCACAACAGGGACCATACATACCAGCCGCTTGCCCACAAGTTTGAAAAGATGATCATCTTCATTGGATTTTTTTTGAAAATCAAGAAACCATTGACCATCAATCAGAGACCACCCTGTCTTTACAAACTCAGCGAGAAGGCTGGATTCACCGGACATTTTTATGCCAATCACCTCCTTACTTGTTGGAACGGAATTCTTCCCTACCTTTTCTTTCAAAGAATCCCTTATAAAAATAGAATGAAAACAAAGAAAATTAGGAACCGCATTAGCTGCAGTTTAATTATATGATAATATTTGTAAACAAGTTATAAAACTGTCATATAAATTGTCATTGACATTGGGAATGTAGGAAAGTGGTATCCAAGACTCCAATCTGTCGAATAAAAGCATCTCTATGCTTTAGAGGTATAGAGGAACTTGACTTTATGAACTTCACAAATGGGATGTCAAACGAGTTCAAAGATTGCTCATTGAAGACTTTGGATAATTGTCTACAAAGATGATTAATCTACAAAGACCGCATTTATATCAACTGCAATTGCAACATTATTATTATAAAGCAAACACATAAGAGGAAACATAGTGAGTGAAGAAGCACAAACACTTTAGTGTGTATCAGTGTCTGACACTTGGAACACTCTCATACTAATTGGACACTCGTTAGCACAACAGATATGTGTTAGACAACAGTCATACAAACATGTATCAAACCCTTGTTATGTATACTAAATAGATATAACATGGGAAAAATAATAAATTTTGCAAGCTAAATATATCAAACTCATTTTTTTTTTCAAAATATAAATGCATAGACTTATTTACTTTGAATTTTCCACTTGTATAAAAATATATATTTTTTAAAACTGTGTAATTTATTAAACATGTCTTTTCCATGTCCGTTTATCAAATTTCAATGAATAAGTCTCCATATCCATGTCATGTCATATTTGTGTCTCATATTCGAGTCCATGCTTCTTATGCAGTGACTATGTATCTTTGTTTCCGGCGACTTGTAACCATAAATATAGCATCAACTCCCGAGCTACTAGAAAGGAAGAATCACCTTACCTCAATTGAAGGCTGATGACCTCATTCCCTGCTTCATCAGTGACTTGCATCCAACCCTTTGAGTGCTGCATCTTTGTGCAGGAAGGGAGAAAAGAAGTCCATCTGGACAGTTCTCGAGAAAAAAACATATGAAGTTCCCGTGGTGCAGGGTGGGGAACGGTGAATGAGATAGCCACTCTGAGGGAAATTGGCTTGGAGCTTACATGGTCAGAAACTGGCTTCAACTCCAACCATCTCTCCATTGAGAGCTTAGAGGTTGGAACAAGAATGTCATGTAGAGGGAGTGAAATGGAGCCCAATGTTAAGCTGGTCCGTGTTATCGGTATGCTGGAAGACCTATTGCAGATGAGCTCAAATTGCAGATCTCCTTTAGGTTCACACTGGAAAGAAGCAACCTGTTTCACCCCTGTCTCAGATAATATGCTCAGTTTCCGTTTGGCACTGAATATTGCATCTGGTTGA

mRNA sequence

ATGGCTAAATCGCCGCCGTGGACGACGGTAAAACGAGATGTGTACATTAGACGACAGCCACTTGTTGCCGGAATCATTTTGATCTCCTCATTCTCAGACTGTTTTCTGAGCATTGTGACTATAAACTATGGTTCCTGTGGCCGGTTGAGGGATGAACGAGTTTCGTCTCGTTTTATGGCCAAAACCGCCGCATCCGCCGCCACAGCCACCACCACAGCCACCACCACAGCCACCACTCTTTGCCACGATTCCACCAACAGAACTACCACTATTTACAATATTTCCGCACCCACCACCACAACCGCCAGCGCCGCATCCACCACATCCGCCACTGTTTACAATATTTCCGCACCCACCACCACAGCCGCCAGCACCGCATCCACCACAGCCACCACTGTTTATAATATTTCCGCACCCACCACCACAACCGCCAGCACCGCATCCGCCACATCCACCGCTCTTCACCATATTTCCACACCCACCACCACATCCACCAGCACCGCAACCCCCACAGCCACCGCTCTTCACCATGTTTCCACACCCACCACCACAACCGCCAGCACCGCATCCACCACATCCACCGCTCTTCACCATGTTTCCGGACCCTGCAGTGTAACCTCCAGCATCACATCGGCCACAATGACTACTAAGCTCATCCTCTTTCAAAGACGTATGAACACTCTCAGGAACAGGGGCAACCTCCAATTTTTCTTCACTTACAGGTGGGGAACGGTGAATGAGATAGCCACTCTGAGGGAAATTGGCTTGGAGCTTACATGGTCAGAAACTGGCTTCAACTCCAACCATCTCTCCATTGAGAGCTTAGAGGTTGGAACAAGAATGTCATGTAGAGGGAGTGAAATGGAGCCCAATGTTAAGCTGGTCCGTGTTATCGGTATGCTGGAAGACCTATTGCAGATGAGCTCAAATTGCAGATCTCCTTTAGGTTCACACTGGAAAGAAGCAACCTGTTTCACCCCTGTCTCAGATAATATGCTCAGTTTCCGTTTGGCACTGAATATTGCATCTGGTTGA

Coding sequence (CDS)

ATGGCTAAATCGCCGCCGTGGACGACGGTAAAACGAGATGTGTACATTAGACGACAGCCACTTGTTGCCGGAATCATTTTGATCTCCTCATTCTCAGACTGTTTTCTGAGCATTGTGACTATAAACTATGGTTCCTGTGGCCGGTTGAGGGATGAACGAGTTTCGTCTCGTTTTATGGCCAAAACCGCCGCATCCGCCGCCACAGCCACCACCACAGCCACCACCACAGCCACCACTCTTTGCCACGATTCCACCAACAGAACTACCACTATTTACAATATTTCCGCACCCACCACCACAACCGCCAGCGCCGCATCCACCACATCCGCCACTGTTTACAATATTTCCGCACCCACCACCACAGCCGCCAGCACCGCATCCACCACAGCCACCACTGTTTATAATATTTCCGCACCCACCACCACAACCGCCAGCACCGCATCCGCCACATCCACCGCTCTTCACCATATTTCCACACCCACCACCACATCCACCAGCACCGCAACCCCCACAGCCACCGCTCTTCACCATGTTTCCACACCCACCACCACAACCGCCAGCACCGCATCCACCACATCCACCGCTCTTCACCATGTTTCCGGACCCTGCAGTGTAACCTCCAGCATCACATCGGCCACAATGACTACTAAGCTCATCCTCTTTCAAAGACGTATGAACACTCTCAGGAACAGGGGCAACCTCCAATTTTTCTTCACTTACAGGTGGGGAACGGTGAATGAGATAGCCACTCTGAGGGAAATTGGCTTGGAGCTTACATGGTCAGAAACTGGCTTCAACTCCAACCATCTCTCCATTGAGAGCTTAGAGGTTGGAACAAGAATGTCATGTAGAGGGAGTGAAATGGAGCCCAATGTTAAGCTGGTCCGTGTTATCGGTATGCTGGAAGACCTATTGCAGATGAGCTCAAATTGCAGATCTCCTTTAGGTTCACACTGGAAAGAAGCAACCTGTTTCACCCCTGTCTCAGATAATATGCTCAGTTTCCGTTTGGCACTGAATATTGCATCTGGTTGA

Protein sequence

MAKSPPWTTVKRDVYIRRQPLVAGIILISSFSDCFLSIVTINYGSCGRLRDERVSSRFMAKTAASAATATTTATTTATTLCHDSTNRTTTIYNISAPTTTTASAASTTSATVYNISAPTTTAASTASTTATTVYNISAPTTTTASTASATSTALHHISTPTTTSTSTATPTATALHHVSTPTTTTASTASTTSTALHHVSGPCSVTSSITSATMTTKLILFQRRMNTLRNRGNLQFFFTYRWGTVNEIATLREIGLELTWSETGFNSNHLSIESLEVGTRMSCRGSEMEPNVKLVRVIGMLEDLLQMSSNCRSPLGSHWKEATCFTPVSDNMLSFRLALNIASG

Homology

[Close]

BLAST of CmoCh16G011120 vs. ExPASy TrEMBL
Match: A0A4V1IQA3 (Uncharacterized protein OS=Blyttiomyces helicus OX=388810 GN=BDK51DRAFT_46727 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-05
Identity = 79/175 (45.14%), Postives = 107/175 (61.14%), Query Frame = 0


Query: 48  RLRDERVSSRFMAKTAASAATATTTAT-----TTATTLCHDSTNRTTTIYNISAPTTTTA 107
           R  D+   + F A T+A++AT+TT+AT     TT TT    ST  TTT    + PTTTT 
Sbjct: 64  RFEDDGFDNEFDASTSATSATSTTSATSTTSSTTTTTSTTTSTTSTTTSTTTTTPTTTTT 123

Query: 108 SAASTTSATVYNISAPTTTAASTASTTATTVYNISAPTTTTASTASATSTALHHISTPTT 167
           S  STTS T  + S  T+T +ST STT+TT  + + PTTTT ST S TST     ++ TT
Sbjct: 124 STTSTTSTT--STSTSTSTTSSTTSTTSTTSTS-TTPTTTTTSTTSTTSTTSSSTTSSTT 183

Query: 168 TSTSTATPTATALHHVSTPTTTTASTASTT-STALHHVSGPCSVTSSITSATMTT 217
           +STS+ T + T+    ST +TT+++T+STT STA    S   S TSS TS+T ++
Sbjct: 184 SSTSSTTSSTTSSTTSSTSSTTSSTTSSTTSSTASSTTSSTSSTTSSTTSSTTSS 235

[Close]

BLAST of CmoCh16G011120 vs. ExPASy TrEMBL
Match: F2UPH5 (Uncharacterized protein OS=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) OX=946362 GN=PTSG_12992 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-05
Identity = 63/155 (40.65%), Postives = 87/155 (56.13%), Query Frame = 0


Query: 62  TAASAATATTTATTTATTLCHDSTNRTTTIYNISAPTTTTASAASTTSATVYNISAPTTT 121
           T  +  T TTT TTT TT    +T  TTT    +  TTTT +  +TT+ T    +  TTT
Sbjct: 295 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 354

Query: 122 AASTASTTATTVYNISAPTTTTASTASATSTALHHISTPTTTSTSTATPTATALHHVSTP 181
             +T +TT TT    +  TTTT +T + T+T LHH ST TTT+T+T T T T     +T 
Sbjct: 355 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTVLHHSSTTTTTTTTTTTTTTTTTTTTTTT 414

Query: 182 TTTTASTASTTSTALHHVSGPCSVTSSITSATMTT 217
           TTTT +T +TT+T     +   + T++ T+ T TT
Sbjct: 415 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 449

[Close]

BLAST of CmoCh16G011120 vs. ExPASy TrEMBL
Match: A0A6I8VZ82 (mucin-5AC OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=LOC26532175 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 65/155 (41.94%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 62  TAASAATATTTATTTATTLCHDSTNRTTTIYNISAPTTTTASAASTTSATVYNISAPTTT 121
           T  +  T TTT TTT TT C  ST  TTT       TTTT +  +TT+ T    +  TTT
Sbjct: 99  TTTTTTTTTTTTTTTTTTTCSPSTTTTTT-------TTTTTTTTTTTTTTTTTTTTTTTT 158

Query: 122 AASTASTTATTVYNISAPTTTTASTASATSTALHHISTPTTTSTSTATPTATALHHVSTP 181
             +T +TT TT    + PTTTT +T S T+T     +T TTT+T+T T T T     +T 
Sbjct: 159 TTTTTTTTTTTTTTTTTPTTTTTTTCSTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 218

Query: 182 TTTTASTASTTSTALHHVSGPCSVTSSITSATMTT 217
           TTTT +T +TT+T     +  CS T++ T+ T TT
Sbjct: 219 TTTTTTTTTTTTTPTTTTTTTCSTTTTTTTTTTTT 246

[Close]

BLAST of CmoCh16G011120 vs. ExPASy TrEMBL
Match: A0A6P8XY62 (mucin-2-like OS=Drosophila albomicans OX=7291 GN=LOC117575905 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 62  TAASAATATTTATTTATTLCHDSTNRTTTIYNISAPTTTTASAASTTSATVYNISAPTTT 121
           T  S  T TTT TTT TT    +T  TTT    +  TTTT +  +TT+ T    +  TTT
Sbjct: 173 TPCSTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 232

Query: 122 AASTASTTATTVYNISAPTTTTASTASATSTALHHISTPTTTSTSTATPTATALHHVSTP 181
             +T +TT TT    +  TTTT +T + T+T     +T TTT+T+T T T T     +T 
Sbjct: 233 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 292

Query: 182 TTTTASTASTTSTALHHVSGPCSVTSSITSATMTT 217
           TTTT +T +TT+T     + PC+ T++ T+ T TT
Sbjct: 293 TTTTTTTTTTTTTTTTTTTTPCTTTTTTTTTTTTT 327

[Close]

BLAST of CmoCh16G011120 vs. ExPASy TrEMBL
Match: A0A0K2VG42 (Uncharacterized protein (Fragment) OS=Lepeophtheirus salmonis OX=72036 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-04
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 0


Query: 62  TAASAATATTTATTTATTLCHDSTNRTTTIYNISAPTTTTASAASTTSATVYNISAPTTT 121
           T  +  T TTT TTT TT    +T  TTT    +  TTTT +  +TT+ T    S  TTT
Sbjct: 79  TTTTTTTTTTTTTTTTTTTTSTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTSTTTTT 138

Query: 122 AASTASTTATTVYNISAPTTTTASTASATSTALHHISTPTTTSTSTATPTATALHHVSTP 181
             ST++TT TT    S  TTTT +T ++T+T     +T TTTST+T T T+T+   ++T 
Sbjct: 139 TTSTSTTTTTTTTTTSTTTTTTTTTTTSTTTTTTSTTTTTTTSTTTTTTTSTST-TITTT 198

Query: 182 TTTTASTASTTSTALHHVSGPCSVTSSITSATMTT 217
           TTTT ST STT+T     +   S T++ T+ T TT
Sbjct: 199 TTTTTSTTSTTTTTTTTTTTTTSTTTTTTTTTTTT 232

The following BLAST results are available for this feature:

BLAST of CmoCh16G011120 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G011120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4V1IQA3	4.7e-05	45.14	Uncharacterized protein OS=Blyttiomyces helicus OX=388810 GN=BDK51DRAFT_46727 PE...	[more]
F2UPH5	4.7e-05	40.65	Uncharacterized protein OS=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) OX=...	[more]
A0A6I8VZ82	1.1e-04	41.94	mucin-5AC OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=LOC26532175 PE=4...	[more]
A0A6P8XY62	3.1e-04	40.00	mucin-2-like OS=Drosophila albomicans OX=7291 GN=LOC117575905 PE=4 SV=1	[more]
A0A0K2VG42	3.1e-04	42.58	Uncharacterized protein (Fragment) OS=Lepeophtheirus salmonis OX=72036 PE=4 SV=1	[more]

BLAST of CmoCh16G011120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G011120.1	CmoCh16G011120.1	mRNA