CmoCh16G010930 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010930
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S13
Location	Cmo_Chr16: 7722098 .. 7724154 (+)
RNA-Seq Expression	CmoCh16G010930
Synteny	CmoCh16G010930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGTTTATCGATTGGCAGTTGAGGCCATTGCCAGTTTCTGAAGCAGAGAGAGCTTTCGAAGCCCCTCCATAGTCGTCTTCTACAATGGGTCGTATGCACAGCAGAGGGTGAGTTCATCTTCTTCTCTCTTTCTCATCTTCTAATCCCTCCGATTCAGTAATTCAATCCTTCCTCTCATTTTCGATTGCAGAAAAGGTATTTCAGCTTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTACTCAAGATGTAAGTCCATTTACCTAAAATGTTTGAGCTTCGATTGACTTTGATCGGAACGGGCAGTTCTAGAATGTGTGTTGTCTGTGTTCATTAGGTTGAAGAAAACATCTGCAAATTCGCGAAGAAGGGTTTGACGCCGTCTCAGATCGGTGTAATTCTTCGTGACTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGAAACAAGATCTTGCGGATTCTTAAAGCTCATGGTATTTGTTCCACTTTTCTCTCAATTCAAAAATTTGATGTTATATGAACTTTTGTACCCTATTACTTTCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTCTGGAAATAGTAAGTGGTCACTGATCTGATTCACTGTAGTCTATTTTGTTATCTGTATTATAACTTAAAGGATGATTATTGTGTTAAGCTCTGTTGTTACTCATTATTAGGGTGGATTTAAATTTCCTCTCTTCATGCAAAGTATTGTATTGCAATTGCTTAGATCAATGATCGGTTGAGGATGGTTGGGAGATGAGTCCCACAAAGGCTAATTAAGGGGTTGATTATGAGTTTATAAGTAAAGAATACATCTCTATTAGTAGGAGGCCTTTTGGGGAAACGAAAAGCTACATCTCCACTGGTACAAGGTCTTTTTGAAGAAACCAAAAGCAAAGTCACTAGAGCATATGCTCAAAGTGGACAAATATCACATCACCTTGTGGTTTCTAACATTATCCACTTCCAATTAGTAGTTGAATGTGGAAGAAAATAAGACTTCTCTCTACATGGGTTATTTGAAGTTTAGTTCATATATACTCAGCTACCTACGACTATCATCTTTCCTCCCTGGTGATTGGTTGATTGATTGATTGTTTTTCTTTTTCTTATTGTTTCAGCGAGTCAACTACTGCTAGCACACTTGTTGCCTGATTTTGTCCACTGCTGCACTCATGGGCGACTAAGATCCTTTCATTCACTCTATTCGATGTAAGGTATTTCCCATTATGTGGTAATTGTTCCAAGGTATCACAGAAACATAAGGATCAATTTGAGCTATTCTCATAGTGATTTTGTAGTTTCTTGTCTAATTGGACATGATAGTTTTTCTTATGATAATTGTAGTCGATATTCTTCTGAATTTAAGAGTGGAAATGTGGGCTCTGAAGCATTTTCTGCCATGGGTTCCCCTGTATAAGTATGCTACTTGGCCTACTGAGAATTTAAAGCTTATTGGGATTGTTTATGGTGTCTATGTCTTAAAAGTTCTGATCCTATAATTAATAAAGATGATTCATAACTAACCCAATCCATGATATACCAGATTAACCTGGACGTCGGGTCGGTTTTTATTTGTGATTGGTTGGATTATGAGTGTTAAACTACATTCACACCTCGCCTTGTGGCGCTCGTGTGGGAGGTACAGTTCTAAGCAGAGCGCGCCTTGGTTTACCTCATGGTTAGGAGTGTGCTTTGAGGTTGTCACAGAGGAGGTTCTGTTCTGTTCTGTTCTTAATAAGATTGTTCCTGAGGTGTGTTGAGACTTTCGAGTCCCCAGACTCTTCTCCAGAGGGCGAGGGGTGAACATGAGAAGGCAGTTGTGGTCTTAAGATTAGATTGGTTAGACCATAAGTCCCTGTTTGGATTGATTTTCTA

mRNA sequence

AGGGTTTATCGATTGGCAGTTGAGGCCATTGCCAGTTTCTGAAGCAGAGAGAGCTTTCGAAGCCCCTCCATAGTCGTCTTCTACAATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCAGCTTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTACTCAAGATGTTGAAGAAAACATCTGCAAATTCGCGAAGAAGGGTTTGACGCCGTCTCAGATCGGTGTAATTCTTCGTGACTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGAAACAAGATCTTGCGGATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTCTGGAAATACGAGTCAACTACTGCTAGCACACTTGTTGCCTGATTTTGTCCACTGCTGCACTCATGGGCGACTAAGATCCTTTCATTCACTCTATTCGATGTAAGGTATTTCCCATTATGTGGTAATTGTTCCAAGGTATCACAGAAACATAAGGATCAATTTGAGCTATTCTCATAGTGATTTTGTAGTTTCTTGTCTAATTGGACATGATAGTTTTTCTTATGATAATTGTAGTCGATATTCTTCTGAATTTAAGAGTGGAAATGTGGGCTCTGAAGCATTTTCTGCCATGGGTTCCCCTGTATAAGTATGCTACTTGGCCTACTGAGAATTTAAAGCTTATTGGGATTGTTTATGGTGTCTATGTCTTAAAAGTTCTGATCCTATAATTAATAAAGATGATTCATAACTAACCCAATCCATGATATACCAGATTAACCTGGACGTCGGGTCGGTTTTTATTTGTGATTGGTTGGATTATGAGTGTTAAACTACATTCACACCTCGCCTTGTGGCGCTCGTGTGGGAGGTACAGTTCTAAGCAGAGCGCGCCTTGGTTTACCTCATGGTTAGGAGTGTGCTTTGAGGTTGTCACAGAGGAGGTTCTGTTCTGTTCTGTTCTTAATAAGATTGTTCCTGAGGTGTGTTGAGACTTTCGAGTCCCCAGACTCTTCTCCAGAGGGCGAGGGGTGAACATGAGAAGGCAGTTGTGGTCTTAAGATTAGATTGGTTAGACCATAAGTCCCTGTTTGGATTGATTTTCTA

Coding sequence (CDS)

ATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCAGCTTCAGCATTGCCGTACAAGAGGACTCCACCGAGTTGGCTCAAGATTTCTACTCAAGATGTTGAAGAAAACATCTGCAAATTCGCGAAGAAGGGTTTGACGCCGTCTCAGATCGGTGTAATTCTTCGTGACTCTCATGGTATTGCTCAGGTCAAGAGCGTTACTGGAAACAAGATCTTGCGGATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCCGTCTCGATTAGAAAGCATTTGGAAAGGAACAGGAAGGATAAGGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCTCGCTATTACAAGAAGACCAAGAAGCTCCCACCTGTCTGGAAATACGAGTCAACTACTGCTAGCACACTTGTTGCCTGA

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Homology

[Close]

BLAST of CmoCh16G010930 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 3.6e-79
Identity = 147/151 (97.35%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKIS+QDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 6.3e-76
Identity = 141/151 (93.38%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK ++QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-75
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-75
Identity = 141/151 (93.38%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKIS+QDV+E ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.5e-69
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK +  DVEE I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             VKSVTG+KILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYK+TKKLPP WKYESTTASTLVA
Sbjct: 121 RIHRLARYYKRTKKLPPTWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy TrEMBL
Match: A0A6J1HJQ7 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111465133 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy TrEMBL
Match: A0A5D3D7D6 (40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001340 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy TrEMBL
Match: A0A6J1E645 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111431137 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy TrEMBL
Match: A0A1S3BLF5 (40S ribosomal protein S13 OS=Cucumis melo OX=3656 GN=LOC103490930 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. ExPASy TrEMBL
Match: M5WJE0 (Ribosomal_S13_N domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G286400 PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 5.4e-78
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 284.6 bits (727), Expect = 4.5e-77
Identity = 141/151 (93.38%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK ++QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

[Close]

BLAST of CmoCh16G010930 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 283.9 bits (725), Expect = 7.7e-77
Identity = 141/151 (93.38%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISTQDVEENICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK + QDV+E+ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 152
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151

The following BLAST results are available for this feature:

BLAST of CmoCh16G010930 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	3.6e-79	97.35	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	6.3e-76	93.38	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P59223	1.1e-75	93.38	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
P46298	1.1e-75	93.38	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
Q69UI1	1.5e-69	87.42	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of CmoCh16G010930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJQ7	1.4e-78	100.00	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111465133 PE=3 ...	[more]
A0A5D3D7D6	1.4e-78	100.00	40S ribosomal protein S13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1E645	1.4e-78	100.00	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111431137 PE=...	[more]
A0A1S3BLF5	1.4e-78	100.00	40S ribosomal protein S13 OS=Cucumis melo OX=3656 GN=LOC103490930 PE=3 SV=1	[more]
M5WJE0	5.4e-78	99.34	Ribosomal_S13_N domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G2...	[more]

BLAST of CmoCh16G010930 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	4.5e-77	93.38	ribosomal protein S13A	[more]
AT3G60770.1	7.7e-77	93.38	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 1.1E-39 score: 147.8
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..60 e-value: 1.7E-31 score: 108.0
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..149 e-value: 2.9E-15 score: 66.7
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 74..145 e-value: 4.7E-15 score: 55.5
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..143 e-value: 9.40381E-27 score: 94.107
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 8.9E-30 score: 104.2
None	No IPR available	GENE3D	1.10.287.10		coord: 83..151 e-value: 8.8E-41 score: 140.1
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..151
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..151
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..149 score: 32.205265
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010930.1	CmoCh16G010930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome