CmoCh16G010820 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	acidic leucine-rich nuclear phosphoprotein 32 family member B-like
Location	Cmo_Chr16: 7652889 .. 7653350 (+)
RNA-Seq Expression	CmoCh16G010820
Synteny	CmoCh16G010820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTTCTCGTAACGGTTCGAAATCATGAGCCACGATGTCTTCTTCAACCTTCCTATCATAAGCTTTGTCAAGACGCTGAATTTAGTGCTCGTGAGGAAGACGAAGATAAAAGAGAAGATGATGAAGACGAAAATGCTGATAGTAGTGAAAATGAGAAAATAGATAGAGACAGAGATGAAATTGAACAATTGAACGAGGAAGATGAAGAAGATGCAGATAATGACGGTTTTGATGAAGATGAAGATAGAGATGGAGATGAAATTGAACAATCGAATGAGGAAGATGAAGATAATGACAGTGTTGACAAAGATGAAACCGAGCGGTGGGATGACGAAGAGGAGGAAGAAGAAGAGGAATTGGTGAGGAGGATAGAAGAATTCATAGCTAAGGAAAACAAGAGATGGAGAGAAGAGAAGTTGAGAGACAATTTATTTTTTCAAATTTGTTATAGTGATTGA

mRNA sequence

ATGATTCTTCTCGTAACGGTTCGAAATCATGAGCCACGATGTCTTCTTCAACCTTCCTATCATAAGCTTTGTCAAGACGCTGAATTTAGTGCTCGTGAGGAAGACGAAGATAAAAGAGAAGATGATGAAGACGAAAATGCTGATAGTAGTGAAAATGAGAAAATAGATAGAGACAGAGATGAAATTGAACAATTGAACGAGGAAGATGAAGAAGATGCAGATAATGACGGTTTTGATGAAGATGAAGATAGAGATGGAGATGAAATTGAACAATCGAATGAGGAAGATGAAGATAATGACAGTGTTGACAAAGATGAAACCGAGCGGTGGGATGACGAAGAGGAGGAAGAAGAAGAGGAATTGGTGAGGAGGATAGAAGAATTCATAGCTAAGGAAAACAAGAGATGGAGAGAAGAGAAGTTGAGAGACAATTTATTTTTTCAAATTTGTTATAGTGATTGA

Coding sequence (CDS)

ATGATTCTTCTCGTAACGGTTCGAAATCATGAGCCACGATGTCTTCTTCAACCTTCCTATCATAAGCTTTGTCAAGACGCTGAATTTAGTGCTCGTGAGGAAGACGAAGATAAAAGAGAAGATGATGAAGACGAAAATGCTGATAGTAGTGAAAATGAGAAAATAGATAGAGACAGAGATGAAATTGAACAATTGAACGAGGAAGATGAAGAAGATGCAGATAATGACGGTTTTGATGAAGATGAAGATAGAGATGGAGATGAAATTGAACAATCGAATGAGGAAGATGAAGATAATGACAGTGTTGACAAAGATGAAACCGAGCGGTGGGATGACGAAGAGGAGGAAGAAGAAGAGGAATTGGTGAGGAGGATAGAAGAATTCATAGCTAAGGAAAACAAGAGATGGAGAGAAGAGAAGTTGAGAGACAATTTATTTTTTCAAATTTGTTATAGTGATTGA

Protein sequence

MILLVTVRNHEPRCLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRDEIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSD

Homology

[Close]

BLAST of CmoCh16G010820 vs. ExPASy TrEMBL
Match: A0A6J1E6C0 (nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MILLVTVRNHEPRCLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 60
           MILLVTVRNHEPRCLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD
Sbjct: 37  MILLVTVRNHEPRCLLQPSYHKLCQDAEFSAREEDEDKREDDEDENADSSENEKIDRDRD 96

Query: 61  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 120
           EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE
Sbjct: 97  EIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEE 156

Query: 121 L 122
           L
Sbjct: 157 L 157

[Close]

BLAST of CmoCh16G010820 vs. ExPASy TrEMBL
Match: A0A6J1KZL9 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita maxima OX=3661 GN=LOC111498513 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-09
Identity = 74/167 (44.31%), Postives = 93/167 (55.69%), Query Frame = 0


Query: 1   MILLVTVRNHEP------------RCLLQ--PSYHKLCQDAEFSAREEDEDKREDDEDEN 60
           +ILL+ V  H P             C L+    Y+  CQ+ EF A +++     D +DE 
Sbjct: 52  IILLIIVTYHRPPLHQSPYHIRKGSCYLESYQGYYTPCQNIEFYACDDE----HDSDDEY 111

Query: 61  ADSSENEKIDRDRDEIEQLNEEDEEDADNDGFDEDEDRDGDEIEQSNEEDEDNDSVDKDE 120
            D S+NEK     DEIEQLNE                   DE EQ +EEDED D  D+D+
Sbjct: 112 EDDSQNEK-----DEIEQLNE-------------------DETEQCDEEDEDVD--DEDD 171

Query: 121 TERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDNLFFQICYSD 154
           TER D  E++ ++EL +RIEEFIAK NKRWREEKLRDNLF Q C S+
Sbjct: 172 TERCD--EKDNDDELEKRIEEFIAKVNKRWREEKLRDNLFNQFCSSN 186

The following BLAST results are available for this feature:

BLAST of CmoCh16G010820 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G010820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6C0	1.3e-47	100.00	nucleolin-like OS=Cucurbita moschata OX=3662 GN=LOC111431005 PE=4 SV=1	[more]
A0A6J1KZL9	2.4e-09	44.31	acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita ...	[more]

BLAST of CmoCh16G010820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..131
None	No IPR available	COILS	Coil	Coil	coord: 32..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010820.1	CmoCh16G010820.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane