Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATTCTGAGTCTCGAGATTGGACAACGCTTGAATATGATGTTCTCGGTGTGATTCTCAACAAGATGGTGTCTCTCTATGATTATCTCCAATTCAGCCTCGTATGTAAGTCATGGTATTTTGTTGCATTACGACACAAACACCAACGATCCATAATTACCTCCAAGTTTCCTCAACTGCCGATGCTCATCGTTCCCTCGAAAGATGGTCTTGAAAAGCAGCATTGCTTATACGACCCCAGAAAAAATAGAACCCGTCCTGTTGACTTCAAATTTTGCTTCAACAAAAGGTGTTGTGGCTCCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTCGATCTTACTTTATTCAATCCTTTTTCTGGGACTGTGATTCGTCTTCCTTCCATTTTCATAGAGGATGAACCTGATTATACTCCAGACCGCATAGTGAAAGCTATATTAACCAAAGATCCATCATTATATCCAAATGATTATATGGTTGTAGCTATCTATGGTTCATGTGCGAAGTTGTGCCTTATGAGATCAAATGACAAGAGTTGGACGTATTACTATCCAGAACCAAATATTCCTTTTAGTGATGTTAATGTTTATGGTGATACTATATATGCTTCAGGAGTTGATATGATGATTTGGAAAGTTGAAGTTAAGATTAGAAATGATGAAAGTTCATTGATTTCTATTTCTGTAAGGACGGTCCACACCAAAAGTATCGATGATCTAACTAGATCTAATATTACAGTGTCTTCCAAAGGAGAGCTTTTGTTAGTTTTGAGGTCAATATCGGTAGAGGAAACACAATTAGAGACTAACAAGTTTAAAGTTTACAAACTTACTGAAGAGCGTGAAAATGGCATGCGAAAGGCCATAAAGGTTAAGAGTTTAGATGGGGATGCTATGTTTATCGGCGACTCTCAATCCATATGTGTATCAACTAAGGATTTTCGTAAATGTTTACCAAATTGTATATATTTCATGA
mRNA sequence
ATGGATTATTCTGAGTCTCGAGATTGGACAACGCTTGAATATGATGTTCTCGGTGTGATTCTCAACAAGATGGTGTCTCTCTATGATTATCTCCAATTCAGCCTCGTATGTAAGTCATGGTATTTTGTTGCATTACGACACAAACACCAACGATCCATAATTACCTCCAAGTTTCCTCAACTGCCGATGCTCATCGTTCCCTCGAAAGATGGTCTTGAAAAGCAGCATTGCTTATACGACCCCAGAAAAAATAGAACCCGTCCTGTTGACTTCAAATTTTGCTTCAACAAAAGGTGTTGTGGCTCCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTCGATCTTACTTTATTCAATCCTTTTTCTGGGACTGTGATTCGTCTTCCTTCCATTTTCATAGAGGATGAACCTGATTATACTCCAGACCGCATAGTGAAAGCTATATTAACCAAAGATCCATCATTATATCCAAATGATTATATGGTTGTAGCTATCTATGGTTCATGTGCGAAGTTGTGCCTTATGAGATCAAATGACAAGAGTTGGACGTATTACTATCCAGAACCAAATATTCCTTTTAGTGATGTTAATGTTTATGGTGATACTATATATGCTTCAGGAGTTGATATGATGATTTGGAAAGTTGAAGTTAAGATTAGAAATGATGAAAGTTCATTGATTTCTATTTCTGTAAGGACGGTCCACACCAAAAGTATCGATGATCTAACTAGATCTAATATTACAGTGTCTTCCAAAGGAGAGCTTTTGTTAGTTTTGAGGTCAATATCGGTAGAGGAAACACAATTAGAGACTAACAAGTTTAAAGTTTACAAACTTACTGAAGAGCGTGAAAATGGCATGCGAAAGGCCATAAAGATGGGGATGCTATGTTTATCGGCGACTCTCAATCCATATGTGTATCAACTAAGGATTTTCGTAAATGTTTACCAAATTGTATATATTTCATGA
Coding sequence (CDS)
ATGGATTATTCTGAGTCTCGAGATTGGACAACGCTTGAATATGATGTTCTCGGTGTGATTCTCAACAAGATGGTGTCTCTCTATGATTATCTCCAATTCAGCCTCGTATGTAAGTCATGGTATTTTGTTGCATTACGACACAAACACCAACGATCCATAATTACCTCCAAGTTTCCTCAACTGCCGATGCTCATCGTTCCCTCGAAAGATGGTCTTGAAAAGCAGCATTGCTTATACGACCCCAGAAAAAATAGAACCCGTCCTGTTGACTTCAAATTTTGCTTCAACAAAAGGTGTTGTGGCTCCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTCGATCTTACTTTATTCAATCCTTTTTCTGGGACTGTGATTCGTCTTCCTTCCATTTTCATAGAGGATGAACCTGATTATACTCCAGACCGCATAGTGAAAGCTATATTAACCAAAGATCCATCATTATATCCAAATGATTATATGGTTGTAGCTATCTATGGTTCATGTGCGAAGTTGTGCCTTATGAGATCAAATGACAAGAGTTGGACGTATTACTATCCAGAACCAAATATTCCTTTTAGTGATGTTAATGTTTATGGTGATACTATATATGCTTCAGGAGTTGATATGATGATTTGGAAAGTTGAAGTTAAGATTAGAAATGATGAAAGTTCATTGATTTCTATTTCTGTAAGGACGGTCCACACCAAAAGTATCGATGATCTAACTAGATCTAATATTACAGTGTCTTCCAAAGGAGAGCTTTTGTTAGTTTTGAGGTCAATATCGGTAGAGGAAACACAATTAGAGACTAACAAGTTTAAAGTTTACAAACTTACTGAAGAGCGTGAAAATGGCATGCGAAAGGCCATAAAGATGGGGATGCTATGTTTATCGGCGACTCTCAATCCATATGTGTATCAACTAAGGATTTTCGTAAATGTTTACCAAATTGTATATATTTCATGA
Protein sequence
MDYSESRDWTTLEYDVLGVILNKMVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSKDGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFNPFSGTVIRLPSIFIEDEPDYTPDRIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSNDKSWTYYYPEPNIPFSDVNVYGDTIYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSIDDLTRSNITVSSKGELLLVLRSISVEETQLETNKFKVYKLTEERENGMRKAIKMGMLCLSATLNPYVYQLRIFVNVYQIVYIS
Homology
BLAST of CmoCh16G010710 vs. ExPASy TrEMBL
Match:
A0A6J1E6A0 (uncharacterized protein LOC111431103 OS=Cucurbita moschata OX=3662 GN=LOC111431103 PE=4 SV=1)
HSP 1 Score: 552.4 bits (1422), Expect = 1.3e-153
Identity = 271/274 (98.91%), Postives = 272/274 (99.27%), Query Frame = 0
Query: 24 MVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSKDGLEKQHCLYDPRK 83
MVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSKDGLEKQHCLYDPRK
Sbjct: 1 MVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSKDGLEKQHCLYDPRK 60
Query: 84 NRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFNPFSGTVIRLPSIFIEDEPDYTPD 143
NRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFNPFSGTVIRLPSIFIEDEPDYTPD
Sbjct: 61 NRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFNPFSGTVIRLPSIFIEDEPDYTPD 120
Query: 144 RIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSNDKSWTYYYPEPNIPFSDVNVYGDT 203
RIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSNDKSWTYYYPEPNIPFSDVNVYGDT
Sbjct: 121 RIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSNDKSWTYYYPEPNIPFSDVNVYGDT 180
Query: 204 IYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSIDDLTRSNITVSSKGELLLVLRSI 263
IYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSIDDLTRSNITVSSKGELLLVLRSI
Sbjct: 181 IYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSIDDLTRSNITVSSKGELLLVLRSI 240
Query: 264 SVEETQLETNKFKVYKLTEERENGMRKAIKMGML 298
SVEETQLETNKFKVYKLTEERENGMRKAIK+ L
Sbjct: 241 SVEETQLETNKFKVYKLTEERENGMRKAIKVKSL 274
BLAST of CmoCh16G010710 vs. ExPASy TrEMBL
Match:
A0A6J1E6C7 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431011 PE=4 SV=1)
HSP 1 Score: 494.6 bits (1272), Expect = 3.2e-136
Identity = 240/297 (80.81%), Postives = 265/297 (89.23%), Query Frame = 0
Query: 1 MDYSESRDWTTLEYDVLGVILNKMVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQ 60
M+ S+ RDWT L+YDVLGVILNKMVSLYDYLQFS+VCKSWYFVALRHKHQRSIITSKFPQ
Sbjct: 1 MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQ 60
Query: 61 LPMLIVPSKDGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFN 120
LPMLIVPSK+GLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETL+LTLFN
Sbjct: 61 LPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFN 120
Query: 121 PFSGTVIRLPSIFIEDEPDYTPDRIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSND 180
PFSGTVI LPSIFI+DEPDY PDRIVKAILTKDPSLYPNDYMVVAIY S ++LCLMR+ND
Sbjct: 121 PFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRAND 180
Query: 181 KSWTYYYPEPNIPFSDVNVYGDTIYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSI 240
KSWTY YPEPNIPF D+NV DT+YA+ +MM+WKVEVK R+DESS ISIS++ VH K
Sbjct: 181 KSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRT 240
Query: 241 DDLTRSNITVSSKGELLLVLRSISVEETQLETNKFKVYKLTEERENGMRKAIKMGML 298
+D S IT SSKGELLLVLRSIS E++QLET KFKVYKL +E EN M +A+K+ L
Sbjct: 241 NDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSL 297
BLAST of CmoCh16G010710 vs. ExPASy TrEMBL
Match:
A0A6J1E923 (probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 PE=4 SV=1)
HSP 1 Score: 419.1 bits (1076), Expect = 1.7e-113
Identity = 203/297 (68.35%), Postives = 240/297 (80.81%), Query Frame = 0
Query: 1 MDYSESRDWTTLEYDVLGVILNKMVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQ 60
M+ S SRDWT L+YDVLGVILNKMVSLYDYLQF+LVCKSWYF+ALRHKH+RSIITSK Q
Sbjct: 1 MENSNSRDWTALDYDVLGVILNKMVSLYDYLQFNLVCKSWYFLALRHKHERSIITSKVTQ 60
Query: 61 LPMLIVPSKDGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFN 120
LPMLIVPSKDGLEKQHCLYD +N RPVDFKFCFNKRCCGSSFGWLIM +ETL + LFN
Sbjct: 61 LPMLIVPSKDGLEKQHCLYDLTRNVVRPVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFN 120
Query: 121 PFSGTVIRLPSIFIEDEPDYTPDRIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSND 180
PFSGTVI LP + D+ ++ P I+KAILTKDPSLYPNDYMVVAI+G+ +LCL+R+ND
Sbjct: 121 PFSGTVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVAIFGTYKRLCLIRAND 180
Query: 181 KSWTYYYPEPNIPFSDVNVYGDTIYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSI 240
K+WTYYYP PNIPF+D+N+ GDT+YA+ + +WKVEV+ DESS I ISV+ VHT +
Sbjct: 181 KTWTYYYPTPNIPFNDINICGDTLYATEYYLNVWKVEVENSEDESSSICISVKMVHTIEM 240
Query: 241 DDLTRSNITVSSKGELLLVLRSISVEETQLETNKFKVYKLTEERENGMRKAIKMGML 298
L S IT SSKGELL+VLR + E Q ET F+VYKL E E+ MR+A+++ L
Sbjct: 241 GHLVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVEVKSL 297
BLAST of CmoCh16G010710 vs. ExPASy TrEMBL
Match:
A0A6J1E5P5 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 PE=4 SV=1)
HSP 1 Score: 413.7 bits (1062), Expect = 7.1e-112
Identity = 202/297 (68.01%), Postives = 238/297 (80.13%), Query Frame = 0
Query: 1 MDYSESRDWTTLEYDVLGVILNKMVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQ 60
M+ S+SRDWT L+YDVLGVILNKMVSLYDYLQFSLVCKSWYF+AL HKHQRSII SK PQ
Sbjct: 1 MENSKSRDWTALDYDVLGVILNKMVSLYDYLQFSLVCKSWYFLALHHKHQRSIIASKVPQ 60
Query: 61 LPMLIVPSKDGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFN 120
LPMLIVPSKDGLEKQHCLYD N R VDFKFCFNKRCCGSSFGWLIM +ETL + LFN
Sbjct: 61 LPMLIVPSKDGLEKQHCLYDLTTNIVRSVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFN 120
Query: 121 PFSGTVIRLPSIFIEDEPDYTPDRIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSND 180
PFSG VI LP + D+ ++ P I+KAILTKDPSLYPNDYMVV I+G+ +LCL+R+ND
Sbjct: 121 PFSGAVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVGIFGTYKRLCLIRAND 180
Query: 181 KSWTYYYPEPNIPFSDVNVYGDTIYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSI 240
K+WTYYYP PNIPF+D+N+ DTIYA+ D+ +WKVEV+ DESS ISISV+ VHTK I
Sbjct: 181 KTWTYYYPTPNIPFNDINICRDTIYATENDLDVWKVEVQNSEDESSSISISVKMVHTKRI 240
Query: 241 DDLTRSNITVSSKGELLLVLRSISVEETQLETNKFKVYKLTEERENGMRKAIKMGML 298
+ + IT SSKGELL+VLR + E Q ET F+VYKL E E+ +R+A+++ L
Sbjct: 241 RYIGTAYITESSKGELLVVLRIFNSGEEQFETVDFEVYKLIHENEDELRRAVEVKSL 297
BLAST of CmoCh16G010710 vs. ExPASy TrEMBL
Match:
A0A6J1E5W8 (uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC111431008 PE=4 SV=1)
HSP 1 Score: 403.3 bits (1035), Expect = 9.6e-109
Identity = 197/297 (66.33%), Postives = 234/297 (78.79%), Query Frame = 0
Query: 1 MDYSESRDWTTLEYDVLGVILNKMVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQ 60
M+ S+SRDWTTL+YDVLGVILNKMVSLYDY QFSLVCKSWYF ALRHKHQRSII SK PQ
Sbjct: 1 MENSKSRDWTTLDYDVLGVILNKMVSLYDYFQFSLVCKSWYFHALRHKHQRSIIASKVPQ 60
Query: 61 LPMLIVPSKDGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFN 120
L MLIVP +DG EKQHCLYD +N R VDFKFCFNKRC GSSFGWLIM +ETL + LFN
Sbjct: 61 LAMLIVPLEDGFEKQHCLYDLTRNIVRSVDFKFCFNKRCRGSSFGWLIMRDETLGIVLFN 120
Query: 121 PFSGTVIRLPSIFIEDEPDYTPDRIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSND 180
PFSGTVI LP + D+ ++ P I+KAILTKDPSLYPNDYMVV I+G+ +LCL+R+ND
Sbjct: 121 PFSGTVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVGIFGTYKRLCLIRAND 180
Query: 181 KSWTYYYPEPNIPFSDVNVYGDTIYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSI 240
K+WTYYYP PNIPF+D+N+ GDT+YA+ + +WKVEV+ DESS I ISV+ VHT +
Sbjct: 181 KTWTYYYPTPNIPFNDINICGDTLYATEYYLNVWKVEVENSEDESSSICISVKMVHTIEM 240
Query: 241 DDLTRSNITVSSKGELLLVLRSISVEETQLETNKFKVYKLTEERENGMRKAIKMGML 298
+ S IT SSKGELL+VLR + E Q ET F+VYKL E E+ MR+A+++ L
Sbjct: 241 GHMVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVEIKSL 297
BLAST of CmoCh16G010710 vs. TAIR 10
Match:
AT5G55150.1 (Protein of unknown function (DUF295) )
HSP 1 Score: 45.1 bits (105), Expect = 1.3e-04
Identity = 61/289 (21.11%), Postives = 112/289 (38.75%), Query Frame = 0
Query: 6 SRDWTTLEYDVLGVILNKMVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQLPMLI 65
S W+ ++L + + + D L + VC SW K S + P L
Sbjct: 5 SSSWSEFLPELLNTVFHNLNDARDILNCATVCSSW-------KDSSSAVYYSRTFSPFLF 64
Query: 66 VPSKDGLEKQHCLYDPRKNRTRPVDFKFCFNKRC--CGSSFGWLIMCEETLDLTLFNP-- 125
+ E+ + + P F N++ CGS+ G+L+ T +T P
Sbjct: 65 ISHLSSNEE--IRFSDQFRVLSPGKLGFSGNQQAWVCGSTLGFLLTKPVTKSVTSLPPLI 124
Query: 126 -FSGTVIRLPSIFIEDEPDYTPDRIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSND 185
F L S I + + + I KA+ SL ++++V+ IY + KL R D
Sbjct: 125 SFEDVQRLLQSQAIIPDSEALKNFIKKAV--SSTSLLDDEWVVLVIYNTDRKLAFCRRGD 184
Query: 186 KSWTYYYPEPNIPFSDVNVYGDTIYASGV----DMM--IWKVEVKIRNDESSLISISVRT 245
K WT S + D ++ +GV D + I+ E+ N +++ + +
Sbjct: 185 KQWTDLE-------SVASSVDDIVFCNGVFFAIDRLGEIYHCELSANNPKATPLCSTSPF 244
Query: 246 VHTKSIDDLTRSNITVSSKGELLLVLRSISVEETQLETNKFKVYKLTEE 284
+ D + + S EL +VL+ + + + F++Y+ E
Sbjct: 245 RY-----DSCKKYLAESDYDELWVVLKKLELNDDCDFETSFEIYEFNRE 270
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1E6A0 | 1.3e-153 | 98.91 | uncharacterized protein LOC111431103 OS=Cucurbita moschata OX=3662 GN=LOC1114311... | [more] |
A0A6J1E6C7 | 3.2e-136 | 80.81 | probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431011 P... | [more] |
A0A6J1E923 | 1.7e-113 | 68.35 | probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 P... | [more] |
A0A6J1E5P5 | 7.1e-112 | 68.01 | probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 P... | [more] |
A0A6J1E5W8 | 9.6e-109 | 66.33 | uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC1114310... | [more] |
Match Name | E-value | Identity | Description | |
AT5G55150.1 | 1.3e-04 | 21.11 | Protein of unknown function (DUF295) | [more] |