CmoCh16G010670 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DUF295 domain-containing protein
Location	Cmo_Chr16: 7495115 .. 7496669 (-)
RNA-Seq Expression	CmoCh16G010670
Synteny	CmoCh16G010670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAATTCAAAATTTAGAGATTGGACTGCACTTGACTACGATGTTCTTGGTGTGATTCTCAACAAAATGGTGTCTCTCTATGATTATCTCCAATTCAGCATTGTATGTAAGTCTTGGTATTTTGTTGCATTACGACACAAACACCAACGATCCATAATTACTTCCAAGTTTCCTCAACTGCCGATGCTCATCGTTCCCTCGAAAAATGGTCTTGAAAAGCAGCATTGCTTATACGACCCCAGAAAAAATAGAACCCGTCCTGTTGACTTCAAATTTTGCTTCAACAAAAGGTGTTGTGGCTCCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTTAATCTTACTTTATTCAACCCTTTTTCTGGGACTGTGATTTGTCTTCCTTCCATTTTCATAGATGATGAACCTGATTATGCCCCAGACCGCATAGTTAAAGCTATATTAACCAAAGATCCATCGTTATATCCAAACGATTATATGGTTGTAGCTATCTATAGTTCATATTCAAGGTTATGCCTTATGAGAGCAAATGATAAGAGTTGGACGTATTCGTACCCAGAACCAAATATTCCTTTTAAGGATATTAATGTTTCTAGTGATACTTTATATGCTACGGAAAATAATATGATGGTTTGGAAAGTTGAAGTTAAGAATAGAGATGATGAAAGTTCATCGATTTCTATTTCTTTAAAGATGGTCCACGCTAAAAGAACCAATGATTTCGTTGTATCCTATATTACAGAGTCTTCCAAAGGAGAGCTTTTGTTAGTTTTGAGGTCAATATCTGAAGAGGATTCACAATTGGAGACTACCAAGTTTAAAGTCTACAAACTTATTGATGAGTGTGAAAATGACATGCTAAGGGCCGTAAAGTTGAAGAGTTTAGATGGAGATGCTATGTTTATCGGAGACTCTCAATCCATCTGTGTATCAACTAAGTATTTTCCTAAATGTTTACCAAATTGTATATATTTTATCAATGGTTACTACAATTATATTCCGAATTTAGAACAAGATTCAGGGATATTCAACCTAGAAGATAAAAGATTTGCGAACCACTACATACGAGATCCTGCACACAAGAATTTACCTCAGCCCATTTGGATCATTCCAACAATATGTTCCAAAGATTTTGAAGATTAAGATTCATATTTATTTGTATTAGGATTTTGAAGATTAAGATTCATATTTATTTGTATTAGGATATATTTTATCAATGGTTACTACAATTATATTCCGAATTTAGAACAAGATTCAGGGATATTCAACCTAGAAGATAAAAGATTTGCGAACCACTACATACGAGATCCTGCACACAAGAATTTACCTCAGCCCATTTGGATCATTCCAACAATATGTTCCAAAGATTTTGAAGATTAAGATTCATATTTATTTGTATTAGGATTTTGAAGATTAAGATTCATATTTATTTGTATTAGGATATATTTTTTTTATATTATTATTTCTCTTTTATTCTATTATCTATTGTAATCTAAGACGGAGAATGTTTGAATATAGAAAATTTGTTGAAGCTTTTGTTTGCATTTAA

mRNA sequence

ATGGAAAATTCAAAATTTAGAGATTGGACTGCACTTGACTACGATGTTCTTGGTGTGATTCTCAACAAAATGGTGTCTCTCTATGATTATCTCCAATTCAGCATTGTATGTAAGTCTTGGTATTTTGTTGCATTACGACACAAACACCAACGATCCATAATTACTTCCAAGTTTCCTCAACTGCCGATGCTCATCGTTCCCTCGAAAAATGGTCTTGAAAAGCAGCATTGCTTATACGACCCCAGAAAAAATAGAACCCGTCCTGTTGACTTCAAATTTTGCTTCAACAAAAGGTGTTGTGGCTCCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTTAATCTTACTTTATTCAACCCTTTTTCTGGGACTGTGATTTGTCTTCCTTCCATTTTCATAGATGATGAACCTGATTATGCCCCAGACCGCATAGTTAAAGCTATATTAACCAAAGATCCATCGTTATATCCAAACGATTATATGGTTGTAGCTATCTATAGTTCATATTCAAGGTTATGCCTTATGAGAGCAAATGATAAGAGTTGGACGTATTCGTACCCAGAACCAAATATTCCTTTTAAGGATATTAATGTTTCTAGTGATACTTTATATGCTACGGAAAATAATATGATGGTTTGGAAAGTTGAAGTTAAGAATAGAGATGATGAAAGTTCATCGATTTCTATTTCTTTAAAGATGGTCCACGCTAAAAGAACCAATGATTTCGTTGTATCCTATATTACAGAGTCTTCCAAAGGAGAGCTTTTGTTAGTTTTGAGGTCAATATCTGAAGAGGATTCACAATTGGAGACTACCAAGTTTAAAGTCTACAAACTTATTGATGAGTGTGAAAATGACATGCTAAGGGCCGTAAAGTTGAAGAGTTTAGATGGAGATGCTATGTTTATCGGAGACTCTCAATCCATCTGTGTATCAACTAAACGGAGAATGTTTGAATATAGAAAATTTGTTGAAGCTTTTGTTTGCATTTAA

Coding sequence (CDS)

ATGGAAAATTCAAAATTTAGAGATTGGACTGCACTTGACTACGATGTTCTTGGTGTGATTCTCAACAAAATGGTGTCTCTCTATGATTATCTCCAATTCAGCATTGTATGTAAGTCTTGGTATTTTGTTGCATTACGACACAAACACCAACGATCCATAATTACTTCCAAGTTTCCTCAACTGCCGATGCTCATCGTTCCCTCGAAAAATGGTCTTGAAAAGCAGCATTGCTTATACGACCCCAGAAAAAATAGAACCCGTCCTGTTGACTTCAAATTTTGCTTCAACAAAAGGTGTTGTGGCTCCTCTTTTGGTTGGTTGATCATGTGTGAAGAGACACTTAATCTTACTTTATTCAACCCTTTTTCTGGGACTGTGATTTGTCTTCCTTCCATTTTCATAGATGATGAACCTGATTATGCCCCAGACCGCATAGTTAAAGCTATATTAACCAAAGATCCATCGTTATATCCAAACGATTATATGGTTGTAGCTATCTATAGTTCATATTCAAGGTTATGCCTTATGAGAGCAAATGATAAGAGTTGGACGTATTCGTACCCAGAACCAAATATTCCTTTTAAGGATATTAATGTTTCTAGTGATACTTTATATGCTACGGAAAATAATATGATGGTTTGGAAAGTTGAAGTTAAGAATAGAGATGATGAAAGTTCATCGATTTCTATTTCTTTAAAGATGGTCCACGCTAAAAGAACCAATGATTTCGTTGTATCCTATATTACAGAGTCTTCCAAAGGAGAGCTTTTGTTAGTTTTGAGGTCAATATCTGAAGAGGATTCACAATTGGAGACTACCAAGTTTAAAGTCTACAAACTTATTGATGAGTGTGAAAATGACATGCTAAGGGCCGTAAAGTTGAAGAGTTTAGATGGAGATGCTATGTTTATCGGAGACTCTCAATCCATCTGTGTATCAACTAAACGGAGAATGTTTGAATATAGAAAATTTGTTGAAGCTTTTGTTTGCATTTAA

Protein sequence

MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFNPFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRANDKSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRTNDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGDAMFIGDSQSICVSTKRRMFEYRKFVEAFVCI

Homology

[Close]

BLAST of CmoCh16G010670 vs. ExPASy TrEMBL
Match: A0A6J1E6C7 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431011 PE=4 SV=1)

HSP 1 Score: 643.7 bits (1659), Expect = 4.3e-181
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 0


Query: 1   MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQ 60
           MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQ
Sbjct: 1   MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQ 60

Query: 61  LPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFN 120
           LPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFN
Sbjct: 61  LPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFN 120

Query: 121 PFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRAND 180
           PFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRAND
Sbjct: 121 PFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRAND 180

Query: 181 KSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRT 240
           KSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRT
Sbjct: 181 KSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRT 240

Query: 241 NDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGD 300
           NDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGD
Sbjct: 241 NDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGD 300

Query: 301 AMFIGDSQSICVSTK 316
           AMFIGDSQSICVSTK
Sbjct: 301 AMFIGDSQSICVSTK 315

[Close]

BLAST of CmoCh16G010670 vs. ExPASy TrEMBL
Match: A0A6J1E6A0 (uncharacterized protein LOC111431103 OS=Cucurbita moschata OX=3662 GN=LOC111431103 PE=4 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.3e-137
Identity = 243/292 (83.22%), Postives = 265/292 (90.75%), Query Frame = 0


Query: 24  MVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSKNGLEKQHCLYDPRK 83
           MVSLYDYLQFS+VCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSK+GLEKQHCLYDPRK
Sbjct: 1   MVSLYDYLQFSLVCKSWYFVALRHKHQRSIITSKFPQLPMLIVPSKDGLEKQHCLYDPRK 60

Query: 84  NRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFNPFSGTVICLPSIFIDDEPDYAPD 143
           NRTRPVDFKFCFNKRCCGSSFGWLIMCEETL+LTLFNPFSGTVI LPSIFI+DEPDY PD
Sbjct: 61  NRTRPVDFKFCFNKRCCGSSFGWLIMCEETLDLTLFNPFSGTVIRLPSIFIEDEPDYTPD 120

Query: 144 RIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRANDKSWTYSYPEPNIPFKDINVSSDT 203
           RIVKAILTKDPSLYPNDYMVVAIY S ++LCLMR+NDKSWTY YPEPNIPF D+NV  DT
Sbjct: 121 RIVKAILTKDPSLYPNDYMVVAIYGSCAKLCLMRSNDKSWTYYYPEPNIPFSDVNVYGDT 180

Query: 204 LYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRTNDFVVSYITESSKGELLLVLRSI 263
           +YA+  +MM+WKVEVK R+DESS ISIS++ VH K  +D   S IT SSKGELLLVLRSI
Sbjct: 181 IYASGVDMMIWKVEVKIRNDESSLISISVRTVHTKSIDDLTRSNITVSSKGELLLVLRSI 240

Query: 264 SEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGDAMFIGDSQSICVSTK 316
           S E++QLET KFKVYKL +E EN M +A+K+KSLDGDAMFIGDSQSICVSTK
Sbjct: 241 SVEETQLETNKFKVYKLTEERENGMRKAIKVKSLDGDAMFIGDSQSICVSTK 292

[Close]

BLAST of CmoCh16G010670 vs. ExPASy TrEMBL
Match: A0A6J1E923 (probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 PE=4 SV=1)

HSP 1 Score: 479.9 bits (1234), Expect = 8.3e-132
Identity = 233/315 (73.97%), Postives = 264/315 (83.81%), Query Frame = 0


Query: 1   MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQ 60
           MENS  RDWTALDYDVLGVILNKMVSLYDYLQF++VCKSWYF+ALRHKH+RSIITSK  Q
Sbjct: 1   MENSNSRDWTALDYDVLGVILNKMVSLYDYLQFNLVCKSWYFLALRHKHERSIITSKVTQ 60

Query: 61  LPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFN 120
           LPMLIVPSK+GLEKQHCLYD  +N  RPVDFKFCFNKRCCGSSFGWLIM +ETL + LFN
Sbjct: 61  LPMLIVPSKDGLEKQHCLYDLTRNVVRPVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFN 120

Query: 121 PFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRAND 180
           PFSGTVI LP +   D+ ++ P  I+KAILTKDPSLYPNDYMVVAI+ +Y RLCL+RAND
Sbjct: 121 PFSGTVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVAIFGTYKRLCLIRAND 180

Query: 181 KSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRT 240
           K+WTY YP PNIPF DIN+  DTLYATE  + VWKVEV+N +DESSSI IS+KMVH    
Sbjct: 181 KTWTYYYPTPNIPFNDINICGDTLYATEYYLNVWKVEVENSEDESSSICISVKMVHTIEM 240

Query: 241 NDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGD 300
              V SYITESSKGELL+VLR +   + Q ET  F+VYKLI E E++M RAV++KSLDGD
Sbjct: 241 GHLVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVEVKSLDGD 300

Query: 301 AMFIGDSQSICVSTK 316
           A+FIGDSQSICVSTK
Sbjct: 301 AIFIGDSQSICVSTK 315

[Close]

BLAST of CmoCh16G010670 vs. ExPASy TrEMBL
Match: A0A6J1E5P5 (probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.4e-131
Identity = 232/315 (73.65%), Postives = 264/315 (83.81%), Query Frame = 0


Query: 1   MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQ 60
           MENSK RDWTALDYDVLGVILNKMVSLYDYLQFS+VCKSWYF+AL HKHQRSII SK PQ
Sbjct: 1   MENSKSRDWTALDYDVLGVILNKMVSLYDYLQFSLVCKSWYFLALHHKHQRSIIASKVPQ 60

Query: 61  LPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFN 120
           LPMLIVPSK+GLEKQHCLYD   N  R VDFKFCFNKRCCGSSFGWLIM +ETL + LFN
Sbjct: 61  LPMLIVPSKDGLEKQHCLYDLTTNIVRSVDFKFCFNKRCCGSSFGWLIMRDETLGIVLFN 120

Query: 121 PFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRAND 180
           PFSG VI LP +   D+ ++ P  I+KAILTKDPSLYPNDYMVV I+ +Y RLCL+RAND
Sbjct: 121 PFSGAVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVGIFGTYKRLCLIRAND 180

Query: 181 KSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRT 240
           K+WTY YP PNIPF DIN+  DT+YATEN++ VWKVEV+N +DESSSISIS+KMVH KR 
Sbjct: 181 KTWTYYYPTPNIPFNDINICRDTIYATENDLDVWKVEVQNSEDESSSISISVKMVHTKRI 240

Query: 241 NDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGD 300
                +YITESSKGELL+VLR  +  + Q ET  F+VYKLI E E+++ RAV++KSLDGD
Sbjct: 241 RYIGTAYITESSKGELLVVLRIFNSGEEQFETVDFEVYKLIHENEDELRRAVEVKSLDGD 300

Query: 301 AMFIGDSQSICVSTK 316
           A+FIGDSQSICVSTK
Sbjct: 301 AIFIGDSQSICVSTK 315

[Close]

BLAST of CmoCh16G010670 vs. ExPASy TrEMBL
Match: A0A6J1E5W8 (uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC111431008 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 8.0e-127
Identity = 227/315 (72.06%), Postives = 256/315 (81.27%), Query Frame = 0


Query: 1   MENSKFRDWTALDYDVLGVILNKMVSLYDYLQFSIVCKSWYFVALRHKHQRSIITSKFPQ 60
           MENSK RDWT LDYDVLGVILNKMVSLYDY QFS+VCKSWYF ALRHKHQRSII SK PQ
Sbjct: 1   MENSKSRDWTTLDYDVLGVILNKMVSLYDYFQFSLVCKSWYFHALRHKHQRSIIASKVPQ 60

Query: 61  LPMLIVPSKNGLEKQHCLYDPRKNRTRPVDFKFCFNKRCCGSSFGWLIMCEETLNLTLFN 120
           L MLIVP ++G EKQHCLYD  +N  R VDFKFCFNKRC GSSFGWLIM +ETL + LFN
Sbjct: 61  LAMLIVPLEDGFEKQHCLYDLTRNIVRSVDFKFCFNKRCRGSSFGWLIMRDETLGIVLFN 120

Query: 121 PFSGTVICLPSIFIDDEPDYAPDRIVKAILTKDPSLYPNDYMVVAIYSSYSRLCLMRAND 180
           PFSGTVI LP +   D+ ++ P  I+KAILTKDPSLYPNDYMVV I+ +Y RLCL+RAND
Sbjct: 121 PFSGTVIYLPPVATYDDIEWIPGHIIKAILTKDPSLYPNDYMVVGIFGTYKRLCLIRAND 180

Query: 181 KSWTYSYPEPNIPFKDINVSSDTLYATENNMMVWKVEVKNRDDESSSISISLKMVHAKRT 240
           K+WTY YP PNIPF DIN+  DTLYATE  + VWKVEV+N +DESSSI IS+KMVH    
Sbjct: 181 KTWTYYYPTPNIPFNDINICGDTLYATEYYLNVWKVEVENSEDESSSICISVKMVHTIEM 240

Query: 241 NDFVVSYITESSKGELLLVLRSISEEDSQLETTKFKVYKLIDECENDMLRAVKLKSLDGD 300
              V SYITESSKGELL+VLR +   + Q ET  F+VYKLI E E++M RAV++KSLDGD
Sbjct: 241 GHMVTSYITESSKGELLVVLRILDSGEEQFETVDFEVYKLIHENEDEMRRAVEIKSLDGD 300

Query: 301 AMFIGDSQSICVSTK 316
           A+FIGDSQSICVSTK
Sbjct: 301 AIFIGDSQSICVSTK 315

The following BLAST results are available for this feature:

BLAST of CmoCh16G010670 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G010670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6C7	4.3e-181	100.00	probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431011 P...	[more]
A0A6J1E6A0	1.3e-137	83.22	uncharacterized protein LOC111431103 OS=Cucurbita moschata OX=3662 GN=LOC1114311...	[more]
A0A6J1E923	8.3e-132	73.97	probable F-box protein At4g22165 OS=Cucurbita moschata OX=3662 GN=LOC111431007 P...	[more]
A0A6J1E5P5	1.4e-131	73.65	probable F-box protein At1g65740 OS=Cucurbita moschata OX=3662 GN=LOC111431012 P...	[more]
A0A6J1E5W8	8.0e-127	72.06	uncharacterized protein LOC111431008 OS=Cucurbita moschata OX=3662 GN=LOC1114310...	[more]

BLAST of CmoCh16G010670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR44259	OS07G0183000 PROTEIN-RELATED	coord: 6..314
None	No IPR available	PANTHER	PTHR44259:SF18	UBIQUITIN-PROTEIN LIGASE	coord: 6..314
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 5..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010670.1	CmoCh16G010670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding