CmoCh16G010340 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh16G010340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	WW domain-containing protein
Location	Cmo_Chr16: 7209310 .. 7210862 (+)
RNA-Seq Expression	CmoCh16G010340
Synteny	CmoCh16G010340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCGATGTACTTTTATCTTCAACAAGCGGTCCAACGTTCAGAGTTCAATGTACTTTTATCTTCGACAAGCATATGGGTTCGATGTACTTTTATCTTCAACAAGCGGCCCAGCGTTCAATGGGTCCGATGTACTTTTATCTTCAACAAGAAGCATATGGATTCGATGTACTTTTGTCTTCAACAAGCGGCCCAACATTCAATGGGTTCGATGTACTTTTGTCTTCAACAAGCGGCCCAACATTCAATGGGTTCGATGTACTTTTATCTTCAACAAGCGGCCCAGCGTTCGATGTACTTTTATCTTCAACAAGCGGCCCAGCGTTCAATGTACTTTTATCTTCAACAACAAGCGGCCCAACATTCAATGGGTTCGATGTACTTTTATCTTCAACAAGCGGCCCAGCGTTCAATGTACTTTTATCTTCAACAAGAAGCGTATGGGTTCGATGTACTTTTATCTTCAACAAGCGACCCAGCGTTCAATGTACTTTTATCTTCAACAAGAAGCGTATGGGTTCGATGTACTTTTATCTTCAACAAGCGGCATAGCATTCAATGGGTTCTATCTTCAACAAGAAATCTTCAACGAGCGGCATAGCATTCAATGGGTTCTATCTTCAACAAGAAGCATATGGGTTCGATGTACTTTTATCTTCAACAAGCGGCATAGCATTCAATGGGTTCGATATACTTTTTCTTCAACAAGCGGCCCAGTGTTCAATTATCTTCAACAAGCGGCATAGCATTCAATGGGTTCGATATACTTTTTCTTCAACAAGCGGCCCAGTGTTCAATGCGGGTCGATGTACTTTTATCTTCAACAAGCGGCCCAGCGTTCAATGCAGGTCGAAGCATATGGTTGCCAGATTGGTTAAATGCGAAGAGTCTTGCAAACAATGTAGTTGGGGAATGGATGATTAGGCAATGATAGGATGCATCGGAATTTGAACCCTATAAGATGTCTTTCCATCGAACTCCACAGCAAAAACTTAGTTTTCAATTTTTTAGTACGATGGCTTAATGGTAGCATACTTGGTGGCATGTAAGGATCACTATATATTGCCTTAGTGTGTTCTTACGCCAATCCATAGGGATTACTGAATTTTAAGTGGATGAAAGAAATCAAATGGGATTACGTTACTACAAACAAATGTTTATTTTGAGATTGTCTCCAAGTATAAATCTGAATCTACATTTTATAAATTTCATCAAAATATATTTATCTTCTCCTATCATCCTCATATGCCCCTTCACTTTCTTTATCTTTTAAAAAGCCTAGGAAAGCAAGGAAGCCAAAGAAGAAGAATCCACCAGACCAGTTTCCTCCACCACCGCCACCTCCACCGCCGCCATCACCATCATCACGAGGTGGAAATCCAGAATCGCCATCATCCAGTTGCGGTGACTTCTCCTTGCCTGCAATTTTAGTTTTAGGTAACACAATGTATGGCTAAAAATAAGGCTTAGCAACAGCAACGTTATGATAACCTAGGACGATGCTGATGAATAGGTAAGAACATAGTGAAGCATGTTATTAGCAAGGAGTAA

mRNA sequence

ATGGGCTCGATGTACTTTTATCTTCAACAAGCGGTCCAACGTTCAGAGTTCAATGTACTTTTATCTTCGACAAGCATATGGGTTCGATGCAATGATAGGATGCATCGGAATTTGAACCCTATAAGATGTCTTTCCATCGAACTCCACAGCAAAAACTTAGTTTTCAATTTTTTAGTACGATGGCTTAATGGTAGCATACTTGGTGGCATGAAAGCAAGGAAGCCAAAGAAGAAGAATCCACCAGACCAGTTTCCTCCACCACCGCCACCTCCACCGCCGCCATCACCATCATCACGAGGTGGAAATCCAGAATCGCCATCATCCAGTTGCGGTGACTTCTCCTTGCCTGCAATTTTAGTTTTAGGTAAGAACATAGTGAAGCATGTTATTAGCAAGGAGTAA

Coding sequence (CDS)

ATGGGCTCGATGTACTTTTATCTTCAACAAGCGGTCCAACGTTCAGAGTTCAATGTACTTTTATCTTCGACAAGCATATGGGTTCGATGCAATGATAGGATGCATCGGAATTTGAACCCTATAAGATGTCTTTCCATCGAACTCCACAGCAAAAACTTAGTTTTCAATTTTTTAGTACGATGGCTTAATGGTAGCATACTTGGTGGCATGAAAGCAAGGAAGCCAAAGAAGAAGAATCCACCAGACCAGTTTCCTCCACCACCGCCACCTCCACCGCCGCCATCACCATCATCACGAGGTGGAAATCCAGAATCGCCATCATCCAGTTGCGGTGACTTCTCCTTGCCTGCAATTTTAGTTTTAGGTAAGAACATAGTGAAGCATGTTATTAGCAAGGAGTAA

Protein sequence

MGSMYFYLQQAVQRSEFNVLLSSTSIWVRCNDRMHRNLNPIRCLSIELHSKNLVFNFLVRWLNGSILGGMKARKPKKKNPPDQFPPPPPPPPPPSPSSRGGNPESPSSSCGDFSLPAILVLGKNIVKHVISKE

Homology

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BLAST of CmoCh16G010340 vs. ExPASy TrEMBL
Match: A0A2N9J2R0 (WW domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58493 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.1e-05
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 71  KARKPKKKNPPDQFPPPPPPPPPPSPSSRGG 102
           KARKPKKKNPPDQ PPPPPPPPPPSPSSRGG
Sbjct: 951 KARKPKKKNPPDQLPPPPPPPPPPSPSSRGG 981

[Close]

BLAST of CmoCh16G010340 vs. NCBI nr
Match: GEY99620.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 33/45 (73.33%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 72  ARKPKKKNPPDQFPPPPPPPPPPSPSSRGGNPESPSSSCGDFSLP 117
           AR PKKK PPD  PPPPPPPPPP  SSRGG+P  PSS  GDFS P
Sbjct: 23  ARNPKKKKPPDDHPPPPPPPPPPPSSSRGGSPVPPSSRSGDFSFP 67

The following BLAST results are available for this feature:

BLAST of CmoCh16G010340 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh16G010340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9J2R0	4.1e-05	96.77	WW domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58493 PE=4 ...	[more]

BLAST of CmoCh16G010340 vs. NCBI nr


Match Name	E-value	Identity	Description
GEY99620.1	1.0e-05	73.33	hypothetical protein [Tanacetum cinerariifolium]	[more]

BLAST of CmoCh16G010340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G010340.1	CmoCh16G010340.1	mRNA